# List of top-scoring protein chains for T0370.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 2.24e-18 1ci0A b.45.1.1 25753 1g79A 218 2.30e-18 1ci0A b.45.1.1 25752 1rfeA 162 3.77e-17 2fhqA 141 4.89e-14 1nrgA 261 6.24e-14 b.45.1.1 80694 1t9mA 214 9.13e-14 2asfA 137 7.28e-13 2aq6A 147 1.54e-12 1ty9A 222 1.35e-11 2a2jA 246 4.79e-11 1vl7A 157 2.86e-09 b.45.1.1 108732 2fg9A 178 8.12e-09 1ci0A 228 1.21e-08 1ci0A b.45.1.1 25750 2arzA 247 3.08e-08 2furA 209 1.62e-05 1wlkA 122 2.75e-04 1wliA 122 2.76e-04 1wllA 122 2.76e-04 1flmA 122 2.77e-04 1axj b.45.1.1 25747 1xhnA 184 4.43e-04 1w3oA 216 7.11e-04 1wvbA 322 7.42e-02 2aebA 322 7.76e-02 1ejeA 192 2.53e-01 1ejeA b.45.1.2 25757 1q5xA 161 1.06e+00 c.8.7.1 95947 2greA 349 1.63e+00 1o07A 358 1.77e+00 e.3.1.1 92390 2ffyA 358 4.71e+00 1ogoX 574 4.76e+00 b.133.1.1,b.80.1.10 92925,92926 1fsyA 358 6.68e+00 1gceA e.3.1.1 60016 1my8A 358 6.69e+00 e.3.1.1 85236 1l0gA 358 6.74e+00 e.3.1.1 73400 1l0dA 358 6.84e+00 e.3.1.1 73394 1l0eA 358 6.87e+00 e.3.1.1 73396 2ctfA 102 7.30e+00 1s2uA 295 1.07e+01 c.1.12.7 98401 1s2wA 295 1.11e+01 c.1.12.7 98407 2etvA 346 1.18e+01 1gt7A 274 1.26e+01 c.74.1.1 70398 1p8rA 308 1.27e+01 c.42.1.1 87977 2bc4A 211 1.32e+01 1ojrA 274 1.38e+01 c.74.1.1 93147 1ta1A 314 1.44e+01 1p8sA 314 1.52e+01 c.42.1.1 87979 1hqgA 323 1.52e+01 1d3vA c.42.1.1 61136 1tbhA 314 1.56e+01 1hdmA 201 1.56e+01 1iakA b.1.1.2,d.19.1.1 21583,38157 1tblA 314 1.60e+01 1t5fA 314 1.60e+01 1zpeA 314 1.60e+01 1l0fA 358 1.60e+01 e.3.1.1 73398 1vq0A 302 1.71e+01 1p8nA 314 1.81e+01 c.42.1.1 87965 1p8pA 314 1.84e+01 c.42.1.1 87971 3rlaA 323 1.93e+01 1d3vA c.42.1.1 32564 1t4tA 314 2.04e+01 1tbjA 314 2.08e+01 1p8oA 314 2.12e+01 c.42.1.1 87968 1d3vA 323 2.13e+01 1d3vA c.42.1.1 32559 1hqxA 323 2.13e+01 1d3vA c.42.1.1 61161 1t6eX 381 2.15e+01 b.50.1.2 106564 2rlaA 323 2.16e+01 1d3vA c.42.1.1 32573 1wl4A 397 2.21e+01 1p8mA 314 2.26e+01 c.42.1.1 87962 1i5qA 358 2.45e+01 1gceA e.3.1.1 61820 2d93A 134 2.45e+01 1qp8A 303 2.78e+01 1qp8A c.2.1.4,c.23.12.1 30092,31352 1zrtD 258 3.04e+01 1p8qA 314 3.17e+01 c.42.1.1 87974 1khbA 625 3.20e+01 c.91.1.1,c.109.1.1 68606,68607 1c4zD 154 3.21e+01 1u9aA d.20.1.1 38331 1tr8A 102 3.25e+01 1fobA 334 3.31e+01 c.1.8.3 83255 1xmaA 145 3.66e+01 2a2mA 258 3.93e+01 1j7mA 72 3.98e+01 1e8bA g.14.1.2 62699 1bkcE 256 4.15e+01 1bkcA d.92.1.10 40333 2atpB 115 4.31e+01 1cf3A 583 4.34e+01 1gpeA c.3.1.2,d.16.1.1 30385,37949 1yvhA 329 4.42e+01 1bkcI 256 4.54e+01 1bkcA d.92.1.10 40334 2fauA 341 4.59e+01 1t9kA 347 4.60e+01 c.124.1.5 106721 1zxcA 263 4.64e+01 1jw3A 140 4.66e+01 d.208.1.1 67373 1bkcA 255 4.67e+01 1bkcA d.92.1.10 40331 1vrdA 494 4.81e+01 2cavA 445 4.87e+01 1dgwA b.82.1.2,b.82.1.2 28094,28095 1vrbA 342 4.88e+01 1bkcC 254 4.94e+01 1bkcA d.92.1.10 40332 2ddfA 257 4.99e+01 2a8hA 271 4.99e+01 2fv9A 258 5.13e+01 2fvgA 340 5.35e+01 2bbkH 355 5.40e+01 2bbkH b.69.2.1 27634 1zc2A 361 5.47e+01 2mtaH 373 5.49e+01 2bbkH b.69.2.1 27636 1mg2A 390 5.52e+01 b.69.2.1 79059 1tmf2 267 5.60e+01 1aym2 1s1dA 331 5.63e+01 b.67.3.1 98344 1up3A 294 5.81e+01 1khmA 89 5.91e+01 1dt4A d.51.1.1 38809 1uozA 315 5.93e+01 2fcjA 119 6.06e+01 2cuiA 112 6.10e+01 1q5rH 294 6.13e+01 d.153.1.4 95925 1b47A 304 6.20e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17381,17775,40529 2cblA 305 6.27e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 1x4nA 92 6.29e+01 1j5kA 89 6.54e+01 d.51.1.1 71565 1ko3A 230 6.55e+01 d.157.1.1 90974 1sbf 253 6.68e+01 1led b.29.1.1 24102 1dbnA 239 6.71e+01 1led b.29.1.1 24155 1bw3 125 6.94e+01 1bw4 b.52.1.2 26899 1ax0 239 6.94e+01 1led b.29.1.1 24042 1rflA 172 7.00e+01 c.37.1.8 97384 1fyuA 255 7.19e+01 1led b.29.1.1 24048 1gu6A 452 7.24e+01 a.138.1.3 70575 1fr1A 361 7.25e+01 1gceA e.3.1.1 42734 1djuA 388 7.48e+01 1bjwA c.67.1.1 59116 1gdeA 389 7.50e+01 c.67.1.1 60456 1rkxA 357 7.66e+01 c.2.1.2 97631 1ufvA 276 7.67e+01 c.26.1.4 88487 1utbB 315 8.13e+01 c.94.1.1 108031 1pfzA 380 8.20e+01 1smrA b.50.1.2 26881 2gukA 120 8.29e+01 2b5oA 402 8.31e+01 1gzcA 239 8.42e+01 b.29.1.1 70803 1v4tA 451 8.43e+01 c.55.1.3,c.55.1.3 100311,100312 1v00A 242 8.46e+01 b.29.1.1 108190 1nksA 194 8.47e+01 1nksA c.37.1.1 31886 1al3 324 8.49e+01 1al3 c.94.1.1 35835 1zarA 282 8.52e+01 1v4sA 455 8.53e+01 c.55.1.3,c.55.1.3 100309,100310 1w8wA 149 8.59e+01 1s16A 390 8.62e+01 d.14.1.3,d.122.1.2 98331,98332 1a34A 159 8.67e+01 1a34A b.121.7.1 23286 1lte 239 8.69e+01 1led b.29.1.1 24047