# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 2.19e-17 1ci0A b.45.1.1 25753 1rfeA 162 3.50e-17 1g79A 218 4.67e-17 1ci0A b.45.1.1 25752 1t9mA 214 4.97e-14 2fhqA 141 5.54e-14 2asfA 137 9.69e-14 1nrgA 261 2.50e-13 b.45.1.1 80694 2aq6A 147 8.90e-13 1xxoA 147 1.16e-12 1w9aA 147 1.30e-12 1ty9A 222 1.52e-12 2arzA 247 6.77e-11 1vl7A 157 1.39e-10 b.45.1.1 108732 2fg9A 178 1.47e-08 2furA 209 1.64e-07 1w3oA 216 1.36e-06 1xhnA 184 2.77e-06 1flmA 122 1.97e-05 1axj b.45.1.1 25747 1ejeA 192 4.10e-01 1ejeA b.45.1.2 25757 1y08A 323 1.27e+00 2bitX 165 1.59e+00 1tr8A 102 3.81e+00 2bgcA 238 5.61e+00 1ojrA 274 5.64e+00 c.74.1.1 93147 1uthA 315 5.86e+00 c.94.1.1 108032 2a6hC 1119 6.11e+00 2a1kA 233 6.66e+00 1llnA 262 7.33e+00 d.165.1.1 84625 2d37A 176 7.66e+00 1ko3A 230 8.18e+00 d.157.1.1 90974 1ylnA 252 8.48e+00 1am2 199 8.58e+00 1am2 b.86.1.2 28381 1iw7C 1119 8.66e+00 e.29.1.1 71474 2cpl 165 8.91e+00 2cpl b.62.1.1 27420 1agqA 135 9.21e+00 1agqA g.17.1.2 44789 1yndA 165 9.52e+00 1mc0A 368 1.06e+01 d.110.2.1,d.110.2.1 78937,78938 2glfA 450 1.09e+01 1vzyA 291 1.12e+01 2fauA 341 1.15e+01 1wvhA 134 1.20e+01 1gpc 218 1.21e+01 1gpc b.40.4.7 25393 2bllA 345 1.23e+01 1u6mA 199 1.33e+01 1kuuA 202 1.35e+01 d.153.2.1 73019 2bgiA 272 1.45e+01 1rlmA 271 1.45e+01 1rlmB 271 1.48e+01 1widA 130 1.49e+01 2gukA 120 1.61e+01 1y0pA 571 1.69e+01 1e39A 571 1.70e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 1tdzA 272 1.72e+01 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1qrrA 394 1.73e+01 1qrrA c.2.1.2 29824 1q9iA 571 1.73e+01 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 1nnjA 271 1.76e+01 a.156.1.2,b.113.1.1,g.39.1.8 80669,80670,80671 1pjjA 271 1.76e+01 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 1z7bA 358 1.80e+01 1js8A 394 1.82e+01 a.86.1.1,b.112.1.1 67219,67220 1i0rA 169 1.86e+01 1i0rA b.45.1.2 61489 1i0sA 169 1.86e+01 1i0rA b.45.1.2 61491 1i24A 404 1.89e+01 c.2.1.2 83663 2b5oA 402 1.91e+01 1j9lA 247 1.93e+01 c.106.1.1 62762 1zd7A 159 1.93e+01 1u9jA 358 1.97e+01 1u0tA 307 2.04e+01 e.52.1.1 107567 1vrtA 560 2.15e+01 1rthA c.55.3.1,e.8.1.2 33574,43023 1rloA 271 2.20e+01 1wsrA 375 2.28e+01 1x1fA 149 2.31e+01 1kssA 571 2.39e+01 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 1q0bA 367 2.41e+01 c.37.1.9 95502 2gp4A 628 2.48e+01 1mjc 69 2.49e+01 1mjc b.40.4.5 25319 1n67A 359 2.52e+01 b.2.3.4,b.2.3.4 85354,85355 1lrzA 426 2.71e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2bbsA 290 2.75e+01 1ukuA 102 2.97e+01 d.58.5.2 99533 1p2hA 571 2.98e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 2f5vA 595 3.13e+01 1njhA 119 3.25e+01 b.128.1.1 85787 1j5kA 89 3.32e+01 d.51.1.1 71565 1vclA 432 3.50e+01 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1u4cA 349 3.51e+01 b.69.4.2 107666 1q2lA 939 3.75e+01 1w6sA 599 3.77e+01 1n9lA 109 3.79e+01 d.110.3.6 85468 1vk8A 106 3.81e+01 d.58.48.1 108636 1gefA 123 3.83e+01 1gefA c.52.1.18 60465 1zglM 209 3.83e+01 1kwgA 645 3.83e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1zuoA 186 3.86e+01 1ta8A 332 3.90e+01 1xdfA 157 3.93e+01 1mjfA 281 3.99e+01 c.66.1.17 79198 1tbd 134 4.02e+01 2tbd d.89.1.1 40240 1x88A 359 4.11e+01 2grrA 161 4.12e+01 1wi1A 126 4.25e+01 1pysA 350 4.32e+01 1pysA d.104.1.1 40775 1u9aA 160 4.38e+01 1u9aA d.20.1.1 38333 2c30A 321 4.42e+01 2fsqA 243 4.44e+01 1hlrA 907 4.54e+01 1vlbA 907 4.54e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1iwmA 186 4.58e+01 b.125.1.2 83758 2gokA 429 4.64e+01 1xqbA 247 4.69e+01 1qf6A 642 4.70e+01 1qf6A c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1bqbA 301 4.74e+01 1hyt d.92.1.2 58962 2arpA 116 4.79e+01 3fivA 116 4.80e+01 1fmb b.50.1.1 26768 1zcxA 178 4.98e+01 1xmaA 145 5.00e+01 1rthA 560 5.06e+01 1rthA c.55.3.1,e.8.1.2 33576,43028 1b7yA 350 5.08e+01 1pysA d.104.1.1 40776 1yo1A 260 5.09e+01 1wmmA 145 5.12e+01 1awsA 164 5.25e+01 2cpl b.62.1.1 27431 4fiv 113 5.26e+01 1fmb b.50.1.1 26762 2bc2A 227 5.27e+01 1a7tA d.157.1.1 42031 1kr4A 125 5.30e+01 d.58.5.2 72889 1ta0A 197 5.35e+01 c.108.1.16 106729 1awqA 164 5.36e+01 2cpl b.62.1.1 27461 1b04A 318 5.39e+01 1b04A d.142.2.2 41579 1tzlA 622 5.52e+01 1cbs 137 5.54e+01 1hmt b.60.1.2 27201 1zm8A 259 5.58e+01 2gjgA 248 5.58e+01 1ybiA 288 5.59e+01 2cw5A 255 5.63e+01 1a6q 382 5.71e+01 1a6q a.159.1.1,d.219.1.1 75801,75802 1snzA 344 5.72e+01 b.30.5.4 98930 1xsjA 778 5.77e+01 1ji1A 637 5.88e+01 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 2fvgA 340 6.20e+01 1k3eA 156 6.32e+01 d.198.1.1 68103 1tt0A 623 6.33e+01 1hr0W 71 6.36e+01 1ah9 b.40.4.5 25329 2f57A 317 6.47e+01 1rdr 461 6.57e+01 1rdr e.8.1.4 43116 1evlA 401 6.61e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1ixcA 294 6.64e+01 a.4.5.37,c.94.1.1 83764,83765 1crzA 403 6.65e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1wu7A 434 6.74e+01 2cbzA 237 6.74e+01 1q74A 303 6.76e+01 c.134.1.1 96019 2h0bA 184 7.11e+01 1eqjA 511 7.11e+01 1ejjA c.105.1.1,c.76.1.3 59495,59496 1xg9A 260 7.16e+01 1wj9A 211 7.26e+01 1y7bA 542 7.30e+01 1jtdB 273 7.31e+01 b.69.5.2 67265 1zghA 260 7.35e+01 2fggA 101 7.55e+01 1euhA 475 7.56e+01 1euhA c.82.1.1 35369 1m4vA 204 7.67e+01 b.40.2.2,d.15.6.1 74459,74460 2akrA 285 7.70e+01 1rl2A 137 7.71e+01 1rl2A b.34.5.3,b.40.4.5 24610,25342 1pvtA 238 7.74e+01 c.74.1.1 95189 2h1tA 188 7.79e+01 1plq 258 7.81e+01 1plq d.131.1.2,d.131.1.2 41388,41389 2cbiA 594 7.81e+01 1sr4A 206 7.84e+01 b.42.2.1 105948 2db2A 119 7.85e+01 1lugA 259 7.86e+01 b.74.1.1 91127 2bu3A 254 7.95e+01 1ihgA 370 7.99e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1pvl 301 8.13e+01 1pvl f.6.1.1 43819 1yb2A 275 8.17e+01 2fikA 287 8.26e+01 1okiA 210 8.33e+01 b.11.1.1,b.11.1.1 93255,93256 1tdhA 364 8.35e+01 a.156.1.2,b.113.1.1,g.39.1.8 106772,106773,106774 1zyiA 171 8.49e+01 1qouA 181 8.59e+01 1qouA b.17.1.1 23707 1mqoA 227 8.60e+01 d.157.1.1 103846 1yfqA 342 8.61e+01 1knb 196 8.75e+01 1qhvA b.21.1.1 23841 2cba 260 8.75e+01 2cba b.74.1.1 27821 1uurA 473 8.78e+01 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018