# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 9.84e-18 1ci0A b.45.1.1 25753 1g79A 218 2.69e-17 1ci0A b.45.1.1 25752 1rfeA 162 5.24e-17 2fhqA 141 2.14e-14 2asfA 137 3.82e-14 1nrgA 261 6.76e-14 b.45.1.1 80694 1t9mA 214 1.91e-13 1w9aA 147 4.64e-13 1xxoA 147 6.62e-13 2aq6A 147 1.14e-12 1ty9A 222 7.52e-12 2fg9A 178 7.34e-11 1vl7A 157 9.02e-11 b.45.1.1 108732 2arzA 247 6.02e-10 2furA 209 1.52e-07 1xhnA 184 3.08e-06 1w3oA 216 3.72e-06 1flmA 122 1.30e-05 1axj b.45.1.1 25747 1ejeA 192 2.53e-03 1ejeA b.45.1.2 25757 2etvA 346 6.44e-01 1ko3A 230 1.12e+00 d.157.1.1 90974 1q5xA 161 1.26e+00 c.8.7.1 95947 1zzkA 82 2.10e+00 1s1dA 331 2.33e+00 b.67.3.1 98344 1s2wA 295 2.83e+00 c.1.12.7 98407 1wv2A 265 3.29e+00 1j5kA 89 3.49e+00 d.51.1.1 71565 2d93A 134 4.68e+00 1m40A 263 4.78e+00 e.3.1.1 74437 1nksA 194 4.84e+00 1nksA c.37.1.1 31886 1amuA 563 5.51e+00 1amuA e.23.1.1 43351 1ki9A 192 6.36e+00 c.37.1.1 84404 1r6lA 239 6.67e+00 d.14.1.4,d.101.1.1 97153,97154 1ermA 263 6.95e+00 1btl e.3.1.1 42690 2fauA 341 7.16e+00 1bkcE 256 7.58e+00 1bkcA d.92.1.10 40333 1ujqA 305 7.63e+00 c.1.12.7 99463 1wrrA 301 7.96e+00 2gukA 120 8.08e+00 1r4uA 301 8.30e+00 d.96.1.4,d.96.1.4 97047,97048 1q5qA 259 8.37e+00 d.153.1.4 95904 1iejA 332 9.06e+00 1nnt c.94.1.2 62328 2aebA 322 9.34e+00 1tr8A 102 9.98e+00 1gwmA 153 1.01e+01 b.18.1.19 83348 1qksA 567 1.03e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1btl 263 1.04e+01 1btl e.3.1.1 42691 1aszB 490 1.18e+01 1b8aA b.40.4.1,d.104.1.1 25241,40762 1jq0A 84 1.21e+01 h.3.2.1 71786 1r6xA 395 1.24e+01 b.122.1.3,c.26.1.5 97167,97168 1wj9A 211 1.26e+01 1bdb 277 1.37e+01 1bdb c.2.1.2 29874 1jmtA 104 1.38e+01 d.58.7.3 63180 2bgkA 278 1.41e+01 1y8oA 419 1.43e+01 2ddfA 257 1.44e+01 1zxcA 263 1.52e+01 1h9mA 145 1.57e+01 1h9jA b.40.6.2,b.40.6.2 60833,60834 1uox 296 1.58e+01 1uox 2phlA 397 1.65e+01 1dgwA b.82.1.2,b.82.1.2 28082,28083 1qsoA 149 1.71e+01 1qsmA d.108.1.1 40812 1cr5A 189 1.84e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1w0dA 337 1.85e+01 1whmA 92 1.85e+01 1ojrA 274 1.86e+01 c.74.1.1 93147 1vc1A 110 1.86e+01 c.13.2.1 108493 1bkcI 256 1.88e+01 1bkcA d.92.1.10 40334 2a1vA 144 1.90e+01 1mkmA 249 1.94e+01 a.4.5.33,d.110.2.2 79242,79243 1khtA 192 1.95e+01 c.37.1.1 84401 1y89A 238 1.97e+01 2bjuA 453 2.10e+01 2bitX 165 2.15e+01 1cqqA 180 2.16e+01 1cqqA b.47.1.4 26422 1zboA 210 2.21e+01 1qbzA 123 2.22e+01 1qbzA h.3.2.1 45729 2fsqA 243 2.26e+01 1ye8A 178 2.26e+01 1kfuL 699 2.39e+01 a.39.1.8,b.14.1.1,d.3.1.3 68571,68572,68573 1aisA 182 2.40e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1hfoA 113 2.51e+01 d.80.1.3 61006 1wsrA 375 2.64e+01 1rm6B 324 2.68e+01 2bgiA 272 2.75e+01 1tqmA 282 2.80e+01 a.4.5.56,d.144.1.9 107236,107237 1widA 130 2.90e+01 1fobA 334 2.91e+01 c.1.8.3 83255 1udvA 89 2.97e+01 d.68.6.1 99224 1v7oA 165 2.97e+01 d.67.1.2 100480 1xneA 113 3.03e+01 1t5yA 190 3.05e+01 b.122.1.1,d.17.6.3 106495,106496 2b61A 377 3.18e+01 1gjjA 168 3.31e+01 a.140.1.1,a.140.1.1 83291,83292 1winA 143 3.33e+01 1rdr 461 3.40e+01 1rdr e.8.1.4 43116 2h0bA 184 3.46e+01 1bbpA 173 3.54e+01 1bbpA b.60.1.1 27147 2f31A 233 3.63e+01 2fcjA 119 3.78e+01 1g8fA 511 3.91e+01 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1b6a 478 3.98e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 1j5yA 187 4.03e+01 a.4.5.1,d.94.2.1 71592,71593 1r5mA 425 4.04e+01 1gd0A 122 4.13e+01 1dptA d.80.1.3 39834 1xmaA 145 4.14e+01 1j58A 385 4.19e+01 b.82.1.2 71531 2fgtA 417 4.20e+01 1a8y 367 4.21e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1prxA 224 4.23e+01 1prxA c.47.1.10 33076 1qsmA 152 4.27e+01 1qsmA d.108.1.1 40808 1w0hA 204 4.35e+01 1qfhA 212 4.40e+01 1qfhA b.1.18.10,b.1.18.10 21893,21894 2czdA 208 4.41e+01 1kktA 511 4.43e+01 a.102.2.1 68687 1m5wA 243 4.46e+01 c.1.24.1 84836 1sdjA 310 4.47e+01 d.21.1.2,d.21.1.2 98807,98808 2bkyX 89 4.48e+01 1zarA 282 4.49e+01 1ta0A 197 4.56e+01 c.108.1.16 106729 1ywxA 102 4.59e+01 1uozA 315 4.60e+01 1qyaA 307 4.66e+01 d.21.1.2,d.21.1.2 104653,104654 1zymA 258 4.68e+01 1zymA a.60.10.1,c.8.1.2 18110,30705 2fvgA 340 4.69e+01 1gal 583 4.81e+01 1gpeA c.3.1.2,d.16.1.1 30386,37950 1u94A 356 4.93e+01 c.37.1.11,d.48.1.1 107743,107744 2b0jA 358 5.01e+01 1hr0W 71 5.06e+01 1ah9 b.40.4.5 25329 1ualA 274 5.10e+01 c.116.1.4 88383 2ag5A 246 5.10e+01 1ss9A 311 5.21e+01 c.68.1.4 105978 1g8yA 279 5.22e+01 1g8yA c.37.1.11 32302 1vig 71 5.27e+01 1vih d.51.1.1 38806 1nlfA 279 5.37e+01 c.37.1.11 85850 1umuA 116 5.43e+01 1umuA b.87.1.1 28382 1qrrA 394 5.62e+01 1qrrA c.2.1.2 29824 1uwkA 557 5.63e+01 e.51.1.1 108065 1tdzA 272 5.67e+01 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1ax0 239 5.79e+01 1led b.29.1.1 24042 1sj1A 66 5.80e+01 d.58.1.4 105595 1b8aA 438 5.80e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 2cblA 305 5.85e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 1aqb 183 5.85e+01 1aqb b.60.1.1 27084 1yvhA 329 6.09e+01 2c46A 241 6.17e+01 1g71A 347 6.29e+01 1g71A d.264.1.1 43268 1ne9A 335 6.33e+01 d.108.1.4,d.108.1.4 91839,91840 2iv2X 715 6.33e+01 1v4pA 157 6.34e+01 1i8dA 213 6.35e+01 b.43.4.3,b.43.4.3 61953,61954 1hbq 183 6.41e+01 1aqb b.60.1.1 27078 1i9sA 210 6.41e+01 1i9sA c.45.1.1 62099 2czvC 120 6.48e+01 1d3yA 301 6.52e+01 1d3yA e.12.1.1 43252 1n3lA 372 6.52e+01 c.26.1.1 79966 1so7A 382 6.58e+01 1eyqA 222 6.63e+01 1eypA d.36.1.1 38534 1o54A 277 6.67e+01 c.66.1.13 92482 1ql0A 241 6.67e+01 1qaeA d.4.1.2 37139 1pujA 282 6.69e+01 c.37.1.8 88294 2bypA 214 6.73e+01 1gpeA 587 6.75e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 1jlwA 219 6.89e+01 a.45.1.1,c.47.1.5 71741,71742 2bvfA 459 6.90e+01 2bynA 227 6.91e+01 1pkhA 204 7.13e+01 b.85.4.1 94832 1aquA 297 7.31e+01 1aquA c.37.1.5 31942 2a5hA 416 7.33e+01 2b3nA 159 7.46e+01 1hgxA 183 7.52e+01 1tc1A c.61.1.1 34027 1ga8A 311 7.58e+01 1ga8A c.68.1.4 34516 1kt6A 183 7.60e+01 b.60.1.1 84466 1vi4A 174 7.61e+01 c.8.7.1 100731 1gttA 429 7.65e+01 d.177.1.1,d.177.1.1 70529,70530 1aa6 715 7.67e+01 2napA b.52.2.2,c.81.1.1 26916,35324 1rwiA 270 7.70e+01 b.68.9.1 97987 1n3oA 252 7.73e+01 b.29.1.1 79967 1l8bA 190 7.73e+01 d.86.1.1 73683 1i7oA 429 7.90e+01 1i7oA d.177.1.1,d.177.1.1 61893,61894 1ukgA 252 7.92e+01 b.29.1.1 99489 1xhfA 123 8.00e+01 2gwdA 449 8.21e+01 1zgzA 122 8.23e+01 2h1rA 299 8.24e+01 1erjA 393 8.28e+01 1erjA b.69.4.1 27660 1mw9X 592 8.31e+01 e.10.1.1 91480 2tmdA 729 8.35e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1x7dA 350 8.37e+01 1i24A 404 8.43e+01 c.2.1.2 83663 1q7bA 244 8.50e+01 c.2.1.2 96026 1iy8A 267 8.54e+01 c.2.1.2 83774 1qb7A 236 8.59e+01 1qb7A c.61.1.1 34087 1spxA 278 8.69e+01 c.2.1.2 98958 1ea5A 537 8.69e+01 2bce c.69.1.1 34592 1djqA 729 8.77e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 1wxiA 275 8.82e+01 1djnA 729 8.88e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28612,30313,30598 1cdzA 96 8.90e+01 1cdzA c.15.1.1 30925