# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dnlA 199 4.81e-19 1ci0A b.45.1.1 25753 1g79A 218 7.28e-19 1ci0A b.45.1.1 25752 1rfeA 162 7.52e-18 2fhqA 141 2.32e-15 1nrgA 261 7.61e-15 b.45.1.1 80694 1t9mA 214 1.07e-14 2asfA 137 2.59e-14 1ty9A 222 2.12e-13 2aq6A 147 2.60e-13 1xxoA 147 3.37e-13 1w9aA 147 4.97e-13 1vl7A 157 3.50e-11 b.45.1.1 108732 2arzA 247 6.21e-11 2fg9A 178 1.02e-09 2furA 209 5.37e-08 1w3oA 216 6.18e-07 1xhnA 184 3.39e-06 1flmA 122 6.62e-06 1axj b.45.1.1 25747 1ejeA 192 3.45e-02 1ejeA b.45.1.2 25757 1y08A 323 2.51e+00 1llnA 262 3.57e+00 d.165.1.1 84625 2bitX 165 3.82e+00 1ko3A 230 4.17e+00 d.157.1.1 90974 1mc0A 368 4.70e+00 d.110.2.1,d.110.2.1 78937,78938 1ylnA 252 5.66e+00 2fvgA 340 6.12e+00 2fauA 341 6.64e+00 1tr8A 102 7.78e+00 1tdzA 272 7.88e+00 a.156.1.2,b.113.1.1,g.39.1.8 106787,106788,106789 1am2 199 8.24e+00 1am2 b.86.1.2 28381 2d37A 176 8.43e+00 1nnjA 271 8.93e+00 a.156.1.2,b.113.1.1,g.39.1.8 80669,80670,80671 1pjjA 271 8.94e+00 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 1ojrA 274 9.62e+00 c.74.1.1 93147 1widA 130 1.05e+01 1s2wA 295 1.09e+01 c.1.12.7 98407 1elqA 390 1.10e+01 1elqA c.67.1.3 34436 1eluA 390 1.10e+01 1elqA c.67.1.3 34434 2bgiA 272 1.56e+01 1aisA 182 1.70e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 2glfA 450 1.75e+01 1u9aA 160 1.82e+01 1u9aA d.20.1.1 38333 2bbsA 290 1.89e+01 2h0bA 184 1.96e+01 1agqA 135 1.97e+01 1agqA g.17.1.2 44789 2grrA 161 1.98e+01 1wmmA 145 2.09e+01 1kuuA 202 2.13e+01 d.153.2.1 73019 2gukA 120 2.15e+01 1ri6A 343 2.26e+01 b.69.11.1 97503 2culA 232 2.34e+01 1uthA 315 2.43e+01 c.94.1.1 108032 2arpA 116 2.49e+01 1i0rA 169 2.50e+01 1i0rA b.45.1.2 61489 1i0sA 169 2.50e+01 1i0rA b.45.1.2 61491 1zm8A 259 2.52e+01 1tbd 134 2.57e+01 2tbd d.89.1.1 40240 1j5kA 89 2.58e+01 d.51.1.1 71565 1qrrA 394 2.63e+01 1qrrA c.2.1.2 29824 1ta0A 197 2.73e+01 c.108.1.16 106729 1gefA 123 2.79e+01 1gefA c.52.1.18 60465 1ta8A 332 2.85e+01 2cw5A 255 2.85e+01 1wsrA 375 2.94e+01 2bllA 345 2.95e+01 1njhA 119 2.96e+01 b.128.1.1 85787 1e39A 571 2.97e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 1hgxA 183 2.98e+01 1tc1A c.61.1.1 34027 1i24A 404 2.99e+01 c.2.1.2 83663 1lrzA 426 3.02e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1b04A 318 3.03e+01 1b04A d.142.2.2 41579 1rlmA 271 3.06e+01 1l0qA 391 3.11e+01 b.1.3.1,b.69.2.3 77644,77645 1ywxA 102 3.24e+01 2a1kA 233 3.32e+01 2phlA 397 3.33e+01 1dgwA b.82.1.2,b.82.1.2 28082,28083 1gpc 218 3.35e+01 1gpc b.40.4.7 25393 1d8hA 311 3.50e+01 1d8iA d.63.1.1 39544 1w6sA 599 3.84e+01 1js8A 394 3.84e+01 a.86.1.1,b.112.1.1 67219,67220 1igwA 434 3.85e+01 c.1.12.7 62370 1twfK 120 3.86e+01 1e6pA 499 3.95e+01 1e15A b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 1ogoX 574 3.96e+01 b.133.1.1,b.80.1.10 92925,92926 1rlmB 271 3.99e+01 1jkmB 361 4.00e+01 1jkmA c.69.1.2 34634 1hr0W 71 4.00e+01 1ah9 b.40.4.5 25329 1mdoA 393 4.03e+01 c.67.1.4 79013 1tzlA 622 4.07e+01 1vzyA 291 4.09e+01 1kskA 234 4.16e+01 d.66.1.5,d.265.1.3 72920,90389 1kssA 571 4.36e+01 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 1iejA 332 4.42e+01 1nnt c.94.1.2 62328 1u9jA 358 4.43e+01 2etvA 346 4.44e+01 1r6lA 239 4.49e+01 d.14.1.4,d.101.1.1 97153,97154 1i50K 120 4.55e+01 d.74.3.2 61765 1kr4A 125 4.57e+01 d.58.5.2 72889 1tt0A 623 4.62e+01 1xdfA 157 4.63e+01 1bqbA 301 4.80e+01 1hyt d.92.1.2 58962 1sr4A 206 4.87e+01 b.42.2.1 105948 1ye8A 178 4.88e+01 1u6mA 199 4.97e+01 1at0 145 4.99e+01 1at0 b.86.1.1 28374 1xg9A 260 5.10e+01 1zghA 260 5.10e+01 1qf6A 642 5.12e+01 1qf6A c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1j9lA 247 5.13e+01 c.106.1.1 62762 1x72A 334 5.13e+01 d.126.1.6 109495 2fh1A 344 5.21e+01 1z0mA 96 5.31e+01 1kwgA 645 5.52e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 1ockA 412 5.65e+01 c.117.1.1 86802 1vc1A 110 5.68e+01 c.13.2.1 108493 1pysA 350 5.71e+01 1pysA d.104.1.1 40775 1rloA 271 5.72e+01 1ujqA 305 5.72e+01 c.1.12.7 99463 2f5vA 595 5.77e+01 1z7bA 358 5.83e+01 1uurA 473 5.85e+01 a.47.1.1,b.2.5.5,d.93.1.1 100016,100017,100018 1iwmA 186 5.88e+01 b.125.1.2 83758 1zglM 209 5.96e+01 2iv2X 715 6.02e+01 1zarA 282 6.06e+01 1tqmA 282 6.08e+01 a.4.5.56,d.144.1.9 107236,107237 1s72E 178 6.12e+01 d.141.1.1,d.141.1.1 105323,105324 2bc2A 227 6.18e+01 1a7tA d.157.1.1 42031 1x1fA 149 6.26e+01 1ysjA 404 6.31e+01 1o57A 291 6.34e+01 a.4.5.40,c.61.1.1 92483,92484 2db2A 119 6.43e+01 1ixcA 294 6.45e+01 a.4.5.37,c.94.1.1 83764,83765 2aebA 322 6.48e+01 1fnuA 221 6.53e+01 3seb b.40.2.2,d.15.6.1 25212,37801 1aa6 715 6.57e+01 2napA b.52.2.2,c.81.1.1 26916,35324 1m4vA 204 6.62e+01 b.40.2.2,d.15.6.1 74459,74460 2dkaA 544 6.69e+01 1ax0 239 6.70e+01 1led b.29.1.1 24042 1eyqA 222 6.72e+01 1eypA d.36.1.1 38534 2cbiA 594 6.75e+01 2sli 679 6.94e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1uh4A 637 6.94e+01 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 2f4mA 295 7.06e+01 1pvl 301 7.08e+01 1pvl f.6.1.1 43819 1zd7A 159 7.09e+01 2fcjA 119 7.13e+01 3fivA 116 7.36e+01 1fmb b.50.1.1 26768 1q9iA 571 7.51e+01 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 1goiA 499 7.57e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1p2hA 571 7.58e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 2cbzA 237 7.60e+01 1okiA 210 7.61e+01 b.11.1.1,b.11.1.1 93255,93256 1y0pA 571 7.62e+01 1yndA 165 7.66e+01 1vqoE 178 7.70e+01 2cpl 165 7.75e+01 2cpl b.62.1.1 27420 1b8aA 438 7.79e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1q2lA 939 7.87e+01 1tdhA 364 7.87e+01 a.156.1.2,b.113.1.1,g.39.1.8 106772,106773,106774 1yfqA 342 7.88e+01 1mjc 69 7.98e+01 1mjc b.40.4.5 25319 1lgpA 116 8.01e+01 b.26.1.2 73890 2h1tA 188 8.01e+01 1z0nA 96 8.06e+01 1vi4A 174 8.10e+01 c.8.7.1 100731 1h2wA 710 8.13e+01 b.69.7.1,c.69.1.4 76596,76597 1qfmA 710 8.13e+01 1qfmA b.69.7.1,c.69.1.4 27673,34641 1n3oA 252 8.15e+01 b.29.1.1 79967 1ukgA 252 8.20e+01 b.29.1.1 99489 1zzkA 82 8.25e+01 1q5xA 161 8.25e+01 c.8.7.1 95947 1awsA 164 8.27e+01 2cpl b.62.1.1 27431 1pvtA 238 8.29e+01 c.74.1.1 95189 1q0bA 367 8.34e+01 c.37.1.9 95502 1ne9A 335 8.41e+01 d.108.1.4,d.108.1.4 91839,91840 1jj2E 177 8.43e+01 1ffk1 d.141.1.1,d.141.1.1 63089,63090 1awqA 164 8.47e+01 2cpl b.62.1.1 27461 1kjlA 146 8.50e+01 1b7yA 350 8.66e+01 1pysA d.104.1.1 40776 2gp4A 628 8.68e+01 1o5uA 101 8.76e+01 b.82.1.8 92518 1gci 269 8.78e+01 1gci c.41.1.1 32503 1g57A 217 8.79e+01 1g57A d.115.1.2 60253 2fp8A 322 8.83e+01 2fsqA 243 8.86e+01 1ir21 140 8.91e+01 1g8kB 133 9.00e+01 1g8jB b.33.1.1 24435