CreatePredAlphaCost pred_alpha2k alpha11 T0369.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0369.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0369.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 25 dry6.5 40 dry8 25 dry12 5 \ phobic_fit 4 \ n_ca_c 20 bad_peptide 20 \ sidechain 7 \ bystroff 8 \ soft_clashes 60 backbone_clashes 2 \ break 300 \ pred_alpha2k 3 \ pred_alpha04 4 \ pred_alpha06 5 \ hbond_geom 5 \ hbond_geom_backbone 10 \ hbond_geom_beta 20 \ hbond_geom_beta_pair 50 \ missing_atoms 1