CreatePredAlphaCost pred_alpha2k alpha11 T0369.t2k.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha04 alpha11 T0369.t04.alpha.rdb 2 alpha alpha_prev sum
CreatePredAlphaCost pred_alpha06 alpha11 T0369.t06.alpha.rdb 2 alpha alpha_prev sum

SetCost wet6.5 15 near_backbone 5 way_back 5 dry5 15 dry6.5 20 dry8 15 dry12 5 \
	phobic_fit 2 \
	sidechain 5 \
	n_ca_c	5 bad_peptide 10 \
	bystroff 5 \
	soft_clashes 60  backbone_clashes 2 \
	break 150  \
	pred_alpha2k 2 \
	pred_alpha04 2 \
	pred_alpha06 2 \
	constraints 10 \
	hbond_geom 5 \
	hbond_geom_backbone 10 \
	hbond_geom_beta 50 \
	hbond_geom_beta_pair 100 \
	missing_atoms 1 \
	maybe_metal 0.5 \
	maybe_ssbond 1

# constraints to keep the 4-helix bundle together
Constraint   L85.CA  V12.CA   4.0  7.0  10.0   1
Constraint   L85.CA A120.CA   7.7 10.7  13.7   1
Constraint   L85.CA  L53.CA   4.5  7.5  10.5   1
Constraint   V12.CA A120.CA   4.5  7.5  10.5   1
Constraint   V12.CA  L53.CA   7.7 10.7  13.7   1
Constraint  A120.CA  L53.CA   4.8  7.8  10.8   1