# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f22A 144 1.68e-08 1rxqA 178 3.32e-01 a.213.1.1 105118 1nw3A 416 5.63e+00 c.66.1.31 86288 2b0tA 738 5.85e+00 1r71A 178 6.63e+00 a.4.14.1 104823 1l3pA 102 9.38e+00 a.24.17.1 84520 1iw7C 1119 1.07e+01 e.29.1.1 71474 5eat 548 1.17e+01 5eat a.102.4.1,a.128.1.3 18853,19445 2a6hC 1119 1.17e+01 1mngA 203 1.19e+01 1avmA a.2.11.1,d.44.1.1 15776,38701 1ykjA 394 1.24e+01 3ladA 476 1.36e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30573,30574,40208 1k0iA 394 1.40e+01 c.3.1.2,d.16.1.2 67942,67943 1bco 327 1.48e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1jweA 114 1.53e+01 1b79A a.81.1.1 18455 1fp3A 402 1.64e+01 1fp3A a.102.1.3 18842 2axtE 84 1.70e+01 1a7m 180 1.73e+01 1lki a.26.1.1 16830 1on2A 142 1.75e+01 a.4.5.24,a.76.1.1 87103,87104 5eau 548 1.89e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1mtpA 323 1.90e+01 e.1.1.1 85107 2bzlA 325 1.99e+01 1yarO 237 1.99e+01 1jx4A 352 2.05e+01 d.240.1.1,e.8.1.7 90378,90379 2g7sA 194 2.11e+01 2go7A 207 2.23e+01 1ehkA 562 2.28e+01 1ehkA f.24.1.1 43624 1s5lE 84 2.29e+01 2bg9A 370 2.46e+01 2phh 394 2.47e+01 1pbe c.3.1.2,d.16.1.2 30353,37884 2fbqA 235 2.47e+01 1xmeA 568 2.49e+01 1r2rA 248 2.51e+01 c.1.1.1 96875 1lrrA 131 2.54e+01 d.228.1.1 78165 1bgj 394 2.62e+01 1pbe c.3.1.2,d.16.1.2 30352,37883 1gx3A 284 2.68e+01 d.3.1.5 70678 1qqtA 551 2.71e+01 1qqtA a.27.1.1,c.26.1.1,g.41.1.1 16923,31590,45175 1jj7A 260 2.72e+01 c.37.1.12 63114 1p1xA 260 2.72e+01 c.1.10.1 104060 1z8oA 404 2.73e+01 1exzA 141 2.83e+01 1exzA a.26.1.2 16877 3ertA 261 2.84e+01 3erdA a.123.1.1 19292 1pbe 394 2.93e+01 1pbe c.3.1.2,d.16.1.2 30338,37869 1b79A 119 2.98e+01 1b79A a.81.1.1 18451 1kl7A 514 3.08e+01 c.79.1.1 72678 1jfaA 374 3.20e+01 a.128.1.5 66622 1mioA 534 3.23e+01 1qguA c.92.2.3 35601 1cj3A 392 3.40e+01 1pbe c.3.1.2,d.16.1.2 30347,37878 1w5rA 278 3.45e+01 1jclA 260 3.46e+01 c.1.10.1 66501 1tazA 365 3.50e+01 a.211.1.2 106734 1ux5A 411 3.53e+01 a.207.1.1 100144 1adjA 421 3.53e+01 1adjA c.51.1.1,d.104.1.1 33188,40737 1kiyA 374 3.58e+01 a.128.1.5 72555 1mwmA 320 3.76e+01 c.55.1.1,c.55.1.1 79580,79581 1yucA 255 3.83e+01 1qw9A 502 3.90e+01 b.71.1.2,c.1.8.3 96466,96467 1o5hA 214 3.91e+01 a.191.1.1 92497 1wkyA 464 4.04e+01 2fh5A 185 4.17e+01 1s4kA 120 4.18e+01 a.35.1.6 105254 1mh3A 421 4.35e+01 a.4.1.1,c.94.1.1 79112,79113 1b4uB 302 4.43e+01 1bouB c.56.6.1 33861 1tx4A 198 4.51e+01 1tx4A a.116.1.1 19098 1xdpA 687 4.63e+01 1qi7A 253 4.65e+01 1qi7A d.165.1.1 42210 1ct9A 553 4.66e+01 1ct9A c.26.2.1,d.153.1.1 31616,41834 2b61A 377 4.68e+01 1xwmA 217 4.83e+01 1rovA 857 4.87e+01 a.119.1.1,b.12.1.1 97674,97675 1yyqA 374 4.92e+01 1bouB 302 5.09e+01 1bouB c.56.6.1 33859 1d2fA 390 5.11e+01 1d2fA c.67.1.3 34411 2gupA 292 5.15e+01 2esnA 310 5.23e+01 1xm3A 264 5.23e+01 1ayl 541 5.31e+01 1ayl c.91.1.1,c.109.1.1 64718,64719 1fpxA 352 5.39e+01 1fpxA a.4.5.29,c.66.1.12 59950,59951 1t4bA 367 5.40e+01 c.2.1.3,d.81.1.1 106406,106407 1w0uA 55 5.52e+01 1k8kA 418 5.61e+01 c.55.1.1,c.55.1.1 68305,68306 2czlA 272 5.70e+01 1z0xA 220 5.81e+01 1wv2A 265 5.82e+01 1jipA 403 5.85e+01 a.104.1.1 66748 1l8cA 95 5.89e+01 g.53.1.1 73685 1fp2A 352 5.93e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1jfgA 374 5.98e+01 a.128.1.5 66636 1fmcA 255 6.04e+01 1cydA c.2.1.2 29856 1j99A 293 6.06e+01 c.37.1.5 71618 1pi1A 185 6.07e+01 a.29.7.1 94699 1fgqA 839 6.09e+01 1yge a.119.1.1,b.12.1.1 59826,59827 1yge 839 6.09e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1f8nA 839 6.09e+01 1yge a.119.1.1,b.12.1.1 59703,59704 1xg1A 67 6.20e+01 1spa 396 6.21e+01 1ajsA c.67.1.1 34291 1ylhA 560 6.22e+01 1gd8A 118 6.27e+01 d.188.1.1 60445 1wq3A 322 6.43e+01 1aiaA 396 6.45e+01 1ajsA c.67.1.1 34306 1cmnA 402 6.48e+01 1rom a.104.1.1 18958 1o17A 345 6.55e+01 a.46.2.1,c.27.1.1 80765,80766 1g7cB 94 6.55e+01 1b64 d.58.12.1 39308 1jboB 172 6.57e+01 a.1.1.3 84151 1dl2A 511 6.57e+01 1dl2A a.102.2.1 18844 1cpcL 172 6.58e+01 1qgwC a.1.1.3 15646 1zhxA 438 6.58e+01 1tph1 247 6.64e+01 1amk 1anv 356 6.65e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17890,45365,45371 1tltA 319 6.67e+01 c.2.1.3,d.81.1.5 107135,107136 1ars 396 6.73e+01 1ajsA c.67.1.1 34287 1f60B 94 6.76e+01 1b64 d.58.12.1 39307 1kmiZ 214 6.76e+01 h.4.11.1 72752 1ahxA 396 6.78e+01 1ajsA c.67.1.1 34293 1j8yF 297 6.80e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 2abk 211 6.82e+01 2abk a.96.1.1 18743 1art 396 6.92e+01 1ajsA c.67.1.1 34285 1asg 396 6.96e+01 1ajsA c.67.1.1 34335 1xahA 354 7.03e+01 1lkvX 232 7.06e+01 a.118.14.1 73980 1f7lA 121 7.07e+01 1f7lA d.150.1.2 59666 1cpcB 172 7.09e+01 1qgwC a.1.1.3 15644 2chnA 716 7.13e+01 1kptA 105 7.19e+01 1kptA d.70.1.1 39588 1ariA 396 7.21e+01 1ajsA c.67.1.1 34331 1f24A 402 7.21e+01 1rom a.104.1.1 18953 1xrsA 516 7.38e+01 1j8mF 297 7.47e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1qisA 396 7.51e+01 1ajsA c.67.1.1 34284 1jfbA 404 7.51e+01 a.104.1.1 66624 1h12A 405 7.51e+01 a.102.1.2 83447 2axtB 510 7.54e+01 1am4A 199 7.55e+01 1tx4A a.116.1.1 19100 1ef8A 261 7.56e+01 1ef8A c.14.1.3 30921 1rlkA 117 7.59e+01 c.131.1.1 97651 1o5zA 442 7.72e+01 c.59.1.2,c.72.2.2 92530,92531 1ws9A 387 7.73e+01 1inzA 148 7.88e+01 1eduA a.118.9.1 62610 1z8sA 146 7.93e+01 1f4tA 368 8.08e+01 1f4tA a.104.1.1 18973 1arhA 396 8.09e+01 1ajsA c.67.1.1 34321 2genA 197 8.10e+01 1eemA 241 8.11e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1w5cE 84 8.27e+01 1oxa 403 8.27e+01 1f4tA a.104.1.1 18965 1f7tA 122 8.42e+01 1f7lA d.150.1.2 59667 1sl8A 191 8.51e+01 1ej1A 190 8.58e+01 1ejhA d.86.1.1 40144 1xwtA 405 8.64e+01 1xw2A 405 8.65e+01 1eupA 403 8.76e+01 1rom a.104.1.1 18967 1afrA 345 8.81e+01 1afrA a.25.1.2 16805 1xp3A 307 8.89e+01 1ktpB 172 8.91e+01 a.1.1.3 72991 1s5lF 45 8.93e+01