# TARGET T0369 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0369.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 142 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.003 0.934 0.001 0.002 0.028 0.001 0.001 0.001 0.018 0.009 0.001 0.003 2 T 0.001 0.012 0.725 0.001 0.006 0.132 0.001 0.001 0.002 0.082 0.029 0.007 0.003 3 D 0.001 0.022 0.507 0.001 0.010 0.256 0.001 0.001 0.002 0.154 0.037 0.002 0.009 4 W 0.001 0.003 0.063 0.001 0.015 0.860 0.001 0.001 0.001 0.020 0.034 0.001 0.002 5 Q 0.001 0.001 0.016 0.001 0.005 0.963 0.001 0.001 0.001 0.007 0.008 0.001 0.001 6 Q 0.001 0.001 0.006 0.001 0.002 0.985 0.001 0.001 0.001 0.003 0.004 0.001 0.001 7 A 0.001 0.001 0.002 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.004 0.001 0.001 8 L 0.001 0.001 0.002 0.001 0.001 0.988 0.001 0.001 0.001 0.001 0.007 0.001 0.001 9 D 0.001 0.001 0.002 0.001 0.005 0.977 0.001 0.001 0.001 0.001 0.014 0.001 0.001 10 R 0.001 0.001 0.002 0.001 0.006 0.949 0.001 0.001 0.001 0.002 0.040 0.001 0.001 11 H 0.001 0.001 0.005 0.001 0.011 0.919 0.001 0.001 0.001 0.005 0.060 0.001 0.001 12 V 0.001 0.001 0.019 0.001 0.012 0.901 0.001 0.001 0.001 0.016 0.051 0.001 0.001 13 G 0.001 0.001 0.025 0.001 0.025 0.853 0.001 0.001 0.001 0.017 0.076 0.001 0.001 14 V 0.001 0.001 0.026 0.001 0.031 0.864 0.001 0.001 0.002 0.018 0.058 0.001 0.001 15 G 0.001 0.002 0.037 0.001 0.027 0.853 0.001 0.001 0.004 0.021 0.054 0.001 0.002 16 V 0.001 0.001 0.027 0.001 0.010 0.911 0.001 0.001 0.003 0.019 0.027 0.001 0.001 17 R 0.001 0.001 0.017 0.001 0.013 0.905 0.001 0.001 0.001 0.017 0.045 0.001 0.001 18 T 0.001 0.001 0.018 0.001 0.006 0.934 0.001 0.001 0.001 0.009 0.030 0.001 0.001 19 T 0.001 0.001 0.006 0.001 0.001 0.984 0.001 0.001 0.001 0.002 0.005 0.001 0.001 20 R 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 21 D 0.001 0.001 0.001 0.001 0.002 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 22 L 0.001 0.001 0.001 0.001 0.005 0.985 0.001 0.001 0.001 0.001 0.008 0.001 0.001 23 I 0.001 0.001 0.002 0.001 0.016 0.954 0.001 0.001 0.001 0.002 0.025 0.001 0.001 24 R 0.001 0.001 0.002 0.001 0.030 0.799 0.001 0.001 0.001 0.002 0.166 0.001 0.001 25 L 0.001 0.001 0.006 0.001 0.026 0.581 0.001 0.001 0.001 0.013 0.373 0.001 0.001 26 I 0.001 0.004 0.174 0.001 0.001 0.021 0.001 0.001 0.001 0.777 0.022 0.001 0.001 27 Q 0.001 0.009 0.926 0.001 0.001 0.003 0.001 0.001 0.001 0.046 0.014 0.001 0.001 28 P 0.001 0.003 0.037 0.001 0.369 0.422 0.001 0.001 0.001 0.025 0.144 0.001 0.001 29 E 0.001 0.002 0.018 0.001 0.494 0.319 0.001 0.001 0.001 0.016 0.149 0.001 0.001 30 D 0.001 0.002 0.025 0.002 0.486 0.360 0.001 0.001 0.001 0.016 0.108 0.001 0.001 31 W 0.001 0.018 0.182 0.001 0.192 0.456 0.001 0.001 0.002 0.037 0.099 0.001 0.010 32 D 0.001 0.011 0.161 0.006 0.131 0.265 0.001 0.001 0.003 0.062 0.346 0.009 0.006 33 K 0.001 0.022 0.162 0.003 0.073 0.150 0.001 0.001 0.003 0.200 0.349 0.002 0.033 34 R 0.001 0.010 0.591 0.002 0.009 0.021 0.001 0.001 0.003 0.299 0.040 0.019 0.006 35 P 0.001 0.031 0.820 0.001 0.011 0.020 0.001 0.001 0.004 0.056 0.044 0.001 0.013 36 I 0.001 0.029 0.593 0.002 0.034 0.040 0.001 0.001 0.007 0.204 0.076 0.009 0.005 37 S 0.001 0.011 0.186 0.003 0.079 0.081 0.001 0.001 0.003 0.154 0.473 0.002 0.008 38 G 0.001 0.005 0.127 0.004 0.059 0.045 0.001 0.001 0.002 0.199 0.554 0.003 0.003 39 K 0.001 0.017 0.407 0.001 0.032 0.135 0.001 0.001 0.014 0.225 0.141 0.009 0.018 40 R 0.003 0.052 0.477 0.001 0.010 0.127 0.001 0.001 0.015 0.219 0.047 0.024 0.022 41 S 0.002 0.066 0.538 0.001 0.003 0.262 0.001 0.001 0.013 0.051 0.010 0.007 0.047 42 V 0.001 0.001 0.005 0.001 0.003 0.985 0.001 0.001 0.001 0.002 0.004 0.001 0.001 43 Y 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 E 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 V 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 A 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 V 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 48 H 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 49 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 50 A 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 51 V 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.006 0.001 0.001 52 L 0.001 0.001 0.004 0.001 0.001 0.983 0.001 0.001 0.001 0.002 0.009 0.001 0.001 53 L 0.001 0.001 0.009 0.001 0.001 0.968 0.001 0.001 0.001 0.006 0.012 0.001 0.001 54 E 0.001 0.001 0.009 0.001 0.003 0.956 0.001 0.001 0.001 0.006 0.020 0.001 0.002 55 A 0.004 0.001 0.011 0.001 0.004 0.946 0.001 0.001 0.001 0.005 0.021 0.004 0.003 56 D 0.005 0.001 0.011 0.001 0.005 0.942 0.001 0.001 0.001 0.005 0.022 0.002 0.004 57 L 0.008 0.002 0.016 0.001 0.018 0.892 0.001 0.001 0.002 0.009 0.038 0.003 0.012 58 R 0.009 0.002 0.014 0.002 0.032 0.793 0.001 0.001 0.002 0.014 0.109 0.016 0.005 59 I 0.012 0.003 0.025 0.001 0.045 0.699 0.001 0.002 0.003 0.019 0.172 0.002 0.014 60 A 0.010 0.007 0.113 0.001 0.039 0.598 0.002 0.001 0.005 0.051 0.147 0.013 0.013 61 T 0.001 0.007 0.057 0.002 0.017 0.179 0.001 0.001 0.002 0.082 0.643 0.004 0.005 62 G 0.001 0.002 0.109 0.004 0.008 0.016 0.001 0.001 0.001 0.165 0.687 0.002 0.005 63 A 0.001 0.025 0.637 0.001 0.003 0.008 0.001 0.001 0.009 0.249 0.015 0.042 0.009 64 T 0.001 0.040 0.798 0.001 0.004 0.017 0.001 0.001 0.019 0.055 0.011 0.003 0.052 65 A 0.001 0.010 0.268 0.005 0.091 0.455 0.001 0.001 0.005 0.050 0.104 0.005 0.005 66 D 0.001 0.004 0.175 0.002 0.135 0.530 0.001 0.001 0.002 0.056 0.084 0.003 0.005 67 E 0.001 0.003 0.075 0.002 0.185 0.627 0.001 0.001 0.004 0.041 0.050 0.003 0.007 68 M 0.002 0.009 0.115 0.003 0.089 0.670 0.001 0.001 0.005 0.040 0.048 0.005 0.014 69 A 0.003 0.010 0.126 0.004 0.087 0.577 0.002 0.001 0.009 0.043 0.108 0.011 0.019 70 Q 0.003 0.008 0.124 0.002 0.046 0.470 0.001 0.001 0.007 0.071 0.240 0.012 0.015 71 F 0.001 0.007 0.268 0.002 0.039 0.259 0.001 0.001 0.005 0.121 0.280 0.003 0.015 72 Y 0.001 0.017 0.416 0.001 0.021 0.141 0.001 0.001 0.006 0.219 0.152 0.020 0.008 73 A 0.001 0.024 0.538 0.001 0.018 0.098 0.001 0.001 0.007 0.151 0.122 0.003 0.036 74 V 0.001 0.012 0.612 0.002 0.013 0.034 0.001 0.001 0.005 0.245 0.047 0.021 0.009 75 P 0.001 0.012 0.715 0.001 0.014 0.031 0.001 0.001 0.004 0.092 0.104 0.002 0.025 76 V 0.001 0.052 0.653 0.001 0.012 0.030 0.001 0.001 0.005 0.161 0.062 0.015 0.008 77 L 0.001 0.016 0.811 0.001 0.003 0.028 0.001 0.001 0.002 0.117 0.004 0.002 0.016 78 P 0.001 0.001 0.007 0.001 0.022 0.948 0.001 0.001 0.001 0.003 0.019 0.001 0.001 79 E 0.001 0.001 0.002 0.001 0.013 0.974 0.001 0.001 0.001 0.002 0.009 0.001 0.001 80 Q 0.001 0.001 0.002 0.001 0.015 0.975 0.001 0.001 0.001 0.001 0.006 0.001 0.001 81 L 0.001 0.001 0.004 0.001 0.004 0.987 0.001 0.001 0.001 0.001 0.003 0.001 0.001 82 V 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 83 D 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 84 R 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.006 0.001 0.001 85 L 0.001 0.001 0.003 0.001 0.001 0.989 0.001 0.001 0.001 0.002 0.006 0.001 0.001 86 D 0.001 0.001 0.002 0.001 0.002 0.981 0.001 0.001 0.001 0.002 0.014 0.001 0.001 87 Q 0.001 0.001 0.002 0.001 0.001 0.966 0.001 0.001 0.001 0.002 0.028 0.001 0.001 88 S 0.001 0.001 0.005 0.001 0.002 0.971 0.001 0.001 0.001 0.003 0.020 0.001 0.001 89 W 0.001 0.001 0.004 0.001 0.006 0.977 0.001 0.001 0.001 0.003 0.010 0.001 0.001 90 Q 0.001 0.001 0.002 0.001 0.007 0.976 0.001 0.001 0.001 0.001 0.014 0.001 0.001 91 Y 0.001 0.001 0.002 0.001 0.007 0.972 0.001 0.001 0.001 0.001 0.018 0.001 0.001 92 Y 0.001 0.001 0.009 0.001 0.009 0.941 0.001 0.001 0.001 0.007 0.033 0.001 0.001 93 Q 0.001 0.001 0.016 0.001 0.018 0.831 0.001 0.001 0.001 0.017 0.115 0.001 0.001 94 D 0.001 0.001 0.027 0.001 0.021 0.732 0.001 0.001 0.001 0.029 0.188 0.001 0.001 95 R 0.001 0.002 0.109 0.001 0.024 0.642 0.001 0.001 0.001 0.095 0.123 0.001 0.002 96 L 0.001 0.011 0.290 0.001 0.018 0.492 0.001 0.001 0.001 0.106 0.075 0.001 0.004 97 M 0.001 0.003 0.053 0.001 0.081 0.739 0.001 0.001 0.001 0.020 0.101 0.001 0.002 98 A 0.001 0.002 0.034 0.001 0.112 0.654 0.001 0.001 0.001 0.033 0.160 0.002 0.001 99 D 0.001 0.003 0.065 0.001 0.157 0.563 0.001 0.001 0.001 0.036 0.169 0.001 0.004 100 F 0.001 0.013 0.151 0.001 0.153 0.448 0.001 0.001 0.003 0.045 0.170 0.003 0.010 101 S 0.002 0.010 0.236 0.013 0.116 0.262 0.001 0.001 0.004 0.113 0.215 0.008 0.018 102 T 0.004 0.008 0.306 0.006 0.090 0.173 0.001 0.001 0.013 0.187 0.124 0.053 0.033 103 E 0.004 0.015 0.471 0.005 0.046 0.135 0.002 0.001 0.031 0.116 0.072 0.008 0.093 104 T 0.005 0.056 0.423 0.006 0.016 0.083 0.003 0.002 0.067 0.134 0.032 0.131 0.041 105 T 0.006 0.034 0.538 0.015 0.016 0.043 0.003 0.003 0.062 0.089 0.058 0.020 0.113 106 Y 0.009 0.043 0.479 0.008 0.031 0.054 0.005 0.004 0.058 0.118 0.083 0.043 0.064 107 W 0.004 0.024 0.310 0.009 0.037 0.043 0.002 0.002 0.021 0.200 0.280 0.035 0.033 108 G 0.003 0.010 0.356 0.004 0.019 0.016 0.001 0.001 0.011 0.255 0.288 0.007 0.031 109 V 0.002 0.032 0.502 0.002 0.008 0.013 0.001 0.001 0.014 0.299 0.045 0.059 0.023 110 T 0.001 0.023 0.646 0.002 0.009 0.025 0.001 0.001 0.009 0.158 0.060 0.006 0.061 111 D 0.001 0.019 0.534 0.004 0.014 0.100 0.001 0.001 0.005 0.213 0.078 0.020 0.011 112 S 0.002 0.028 0.437 0.001 0.015 0.282 0.001 0.001 0.005 0.133 0.055 0.008 0.033 113 T 0.001 0.003 0.050 0.001 0.020 0.848 0.001 0.001 0.001 0.026 0.041 0.003 0.005 114 T 0.001 0.001 0.009 0.001 0.006 0.963 0.001 0.001 0.001 0.005 0.012 0.001 0.002 115 G 0.003 0.001 0.005 0.001 0.003 0.974 0.001 0.001 0.001 0.003 0.006 0.002 0.001 116 W 0.003 0.001 0.004 0.001 0.001 0.982 0.001 0.001 0.001 0.001 0.003 0.001 0.003 117 L 0.002 0.001 0.002 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.002 0.001 0.001 118 L 0.001 0.001 0.002 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.002 0.001 0.001 119 E 0.001 0.001 0.002 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.003 0.001 0.001 120 A 0.001 0.001 0.002 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.005 0.001 0.001 121 A 0.001 0.001 0.002 0.001 0.001 0.983 0.001 0.001 0.001 0.002 0.010 0.001 0.001 122 V 0.001 0.001 0.003 0.001 0.002 0.954 0.001 0.001 0.001 0.004 0.035 0.001 0.001 123 H 0.001 0.001 0.007 0.001 0.004 0.918 0.001 0.001 0.001 0.008 0.063 0.001 0.001 124 L 0.001 0.001 0.018 0.001 0.009 0.889 0.001 0.001 0.001 0.011 0.070 0.001 0.001 125 Y 0.001 0.003 0.033 0.001 0.025 0.829 0.001 0.001 0.003 0.022 0.079 0.002 0.003 126 H 0.001 0.003 0.038 0.001 0.032 0.768 0.001 0.001 0.004 0.044 0.098 0.003 0.006 127 H 0.001 0.002 0.043 0.001 0.015 0.822 0.001 0.001 0.004 0.036 0.069 0.002 0.004 128 R 0.001 0.001 0.024 0.001 0.004 0.918 0.001 0.001 0.001 0.020 0.029 0.001 0.002 129 S 0.001 0.001 0.010 0.001 0.001 0.976 0.001 0.001 0.001 0.004 0.007 0.001 0.001 130 Q 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 131 L 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 132 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 133 D 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 134 Y 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 135 L 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 136 N 0.001 0.001 0.001 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.010 0.001 0.001 137 L 0.001 0.001 0.001 0.001 0.001 0.957 0.001 0.001 0.001 0.001 0.040 0.001 0.001 138 L 0.001 0.001 0.003 0.001 0.002 0.429 0.001 0.001 0.001 0.010 0.556 0.001 0.001 139 G 0.001 0.001 0.025 0.001 0.002 0.016 0.001 0.001 0.001 0.032 0.923 0.001 0.001 140 Y 0.001 0.011 0.805 0.001 0.001 0.004 0.001 0.001 0.005 0.154 0.008 0.006 0.004 141 D 0.001 0.055 0.742 0.003 0.004 0.004 0.001 0.001 0.066 0.072 0.013 0.007 0.031 142 I 0.002 0.056 0.613 0.009 0.012 0.015 0.005 0.003 0.097 0.106 0.029 0.025 0.028 143 K 0.001 0.018 0.775 0.004 0.022 0.016 0.002 0.003 0.059 0.047 0.021 0.009 0.025 144 L 0.003 0.014 0.256 0.007 0.356 0.105 0.002 0.003 0.027 0.098 0.096 0.012 0.020 145 D 0.004 0.012 0.224 0.008 0.324 0.100 0.002 0.002 0.015 0.104 0.168 0.014 0.026 146 L 0.005 0.014 0.222 0.003 0.288 0.097 0.002 0.001 0.010 0.090 0.219 0.014 0.035 147 F 0.005 0.028 0.541 0.005 0.051 0.065 0.001 0.001 0.008 0.107 0.139 0.018 0.030 148 E 0.001 0.004 0.893 0.002 0.011 0.010 0.001 0.001 0.001 0.047 0.014 0.007 0.011