# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f22A 144 6.38e-11 1rxqA 178 2.86e-06 a.213.1.1 105118 2bw3A 534 1.17e+00 1xo0A 324 1.30e+00 1jboB 172 1.49e+00 a.1.1.3 84151 1mba 147 1.81e+00 2fal a.1.1.2 15149 2bh4X 134 1.85e+00 1vjxA 157 2.08e+00 a.25.1.1 100837 1ovlA 271 2.19e+00 a.123.1.1 87455 1cpcB 172 2.49e+00 1qgwC a.1.1.3 15644 1p68A 102 2.87e+00 k.8.1.1 94158 3pmgA 561 2.88e+00 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1n2aA 201 3.01e+00 a.45.1.1,c.47.1.5 91553,91554 1k8kE 178 3.28e+00 a.148.1.1 68311 1vi0A 206 4.15e+00 a.4.1.9,a.121.1.1 100720,100721 2fflA 756 4.20e+00 1it2A 146 4.45e+00 a.1.1.2 66365 2b1eA 564 4.77e+00 1lrv 244 4.91e+00 1lrv a.118.1.5 19146 1v54E 109 5.14e+00 a.118.11.1 100326 1z5zA 271 5.33e+00 1e3dB 542 5.43e+00 1h2rL e.18.1.1 59189 1fxxA 482 5.65e+00 1fxxA c.55.3.5 33726 1ku1A 230 5.78e+00 a.118.3.1 72996 1xg0C 177 6.04e+00 1le6A 123 6.15e+00 a.133.1.2 73862 1gx3A 284 6.57e+00 d.3.1.5 70678 1ks9A 291 6.63e+00 a.100.1.7,c.2.1.6 68857,68858 1r2rA 248 6.69e+00 c.1.1.1 96875 1aj2 282 8.25e+00 1aj2 c.1.21.1 29665 2fbhA 146 8.32e+00 1z41A 338 8.64e+00 1w5rA 278 8.68e+00 1kv5A 250 8.90e+00 c.1.1.1 73052 1o5zA 442 9.59e+00 c.59.1.2,c.72.2.2 92530,92531 2gz4A 207 1.02e+01 1t2bA 397 1.03e+01 1kn1B 161 1.04e+01 a.1.1.3 77456 1lrzA 426 1.05e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1sqgA 429 1.06e+01 a.79.1.3,c.66.1.38 105912,105913 3tmkA 216 1.11e+01 3tmkA c.37.1.1 31920 1y9iA 178 1.14e+01 2csbA 519 1.20e+01 1ufoA 238 1.24e+01 c.69.1.27 99344 1m3qA 317 1.24e+01 a.96.1.3,d.129.1.2 91184,91185 2genA 197 1.27e+01 1rz4A 226 1.28e+01 a.4.5.53,a.118.1.18 105131,105132 1d0cA 444 1.28e+01 d.174.1.1 64769 1jfbA 404 1.32e+01 a.104.1.1 66624 1gy8A 397 1.34e+01 c.2.1.2 83376 1yyaA 250 1.38e+01 1oe8A 211 1.46e+01 a.45.1.1,c.47.1.5 86905,86906 1hlb 158 1.49e+01 1hlb a.1.1.2 15625 1to6A 371 1.59e+01 c.141.1.1 107170 1jlvA 209 1.73e+01 a.45.1.1,c.47.1.5 71729,71730 1mtpA 323 1.75e+01 e.1.1.1 85107 2ex2A 458 1.75e+01 1w36B 1180 1.76e+01 1ykuA 136 1.77e+01 1z8oA 404 1.78e+01 1pw4A 451 1.78e+01 f.38.1.1 95198 1knyA 253 1.79e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1ew6A 137 1.81e+01 1ewaA a.1.1.2 15637 1n55A 251 1.89e+01 c.1.1.1 80007 1rh5A 436 1.91e+01 f.41.1.1 97464 1b25A 619 1.93e+01 1b25A a.110.1.1,d.152.1.1 19044,41796 1xioA 261 1.97e+01 1yeyA 444 2.00e+01 1pv1A 299 2.01e+01 1tz9A 367 2.05e+01 c.1.15.6 107466 2evrA 246 2.12e+01 2cqsA 842 2.12e+01 1f8rA 498 2.17e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 1fcyA 236 2.27e+01 2lbd a.123.1.1 19282 1pme 380 2.28e+01 1hcl d.144.1.7 41653 2axtF 45 2.51e+01 2g7sA 194 2.52e+01 1yge 839 2.59e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1z8uA 102 2.60e+01 1nvvS 481 2.60e+01 a.117.1.1 86279 1us7B 265 2.61e+01 a.205.1.1 99858 1o08A 221 2.83e+01 c.108.1.6 86525 1fp2A 352 2.85e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1xwmA 217 2.93e+01 1q74A 303 2.96e+01 c.134.1.1 96019 1zfjA 491 2.97e+01 1ak5 c.1.5.1,d.37.1.1,d.37.1.1 28638,38540,38541 1t0qA 498 2.97e+01 a.25.1.2 106220 2choA 716 2.98e+01 2chnA 716 2.98e+01 1w8iA 156 3.00e+01 1iw0A 215 3.07e+01 a.132.1.1 83720 1q4gA 553 3.08e+01 a.93.1.2,g.3.11.1 95789,95790 1gk9A 260 3.13e+01 d.153.1.2 65246 1reqB 637 3.15e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1m15A 357 3.15e+01 a.83.1.1,d.128.1.2 78368,78369 1twiA 434 3.18e+01 b.49.2.3,c.1.6.1 107399,107400 1xd7A 145 3.27e+01 a.4.5.55 109566 1r6dA 337 3.30e+01 c.2.1.2 97148 1xlyA 234 3.32e+01 1f5qB 252 3.34e+01 1f5qB a.74.1.1,a.74.1.1 18362,18363 2g03A 194 3.35e+01 1m2oA 768 3.36e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1q35A 320 3.38e+01 c.94.1.1 95661 1ezfA 340 3.39e+01 1ezfA a.128.1.2 19440 2d83A 363 3.45e+01 2arzA 247 3.49e+01 1ohpA 125 3.56e+01 1z8sA 146 3.58e+01 1o0sA 605 3.74e+01 c.2.1.7,c.58.1.3 86540,86541 1d3vA 323 3.81e+01 1d3vA c.42.1.1 32559 1n1cA 217 3.83e+01 a.184.1.1 85254 2fbwB 252 3.83e+01 1qe3A 489 3.84e+01 2bce c.69.1.1 34630 1wzdA 215 3.86e+01 1wdtA 665 3.86e+01 2gokA 429 3.89e+01 1efyA 350 3.93e+01 1a26 a.41.1.1,d.166.1.2 17413,42275 2h88B 252 3.94e+01 1fzcA 87 3.95e+01 1fzcA h.1.8.1 45590 1vjzA 341 3.96e+01 c.1.8.3 100838 1w5tA 412 4.00e+01 1d2vC 466 4.05e+01 1mhlC 1y791 680 4.06e+01 1iyeA 309 4.06e+01 e.17.1.1 83786 1tg7A 971 4.07e+01 1ash 150 4.16e+01 1ash a.1.1.2 15622 2frfA 153 4.20e+01 1va6A 518 4.20e+01 1g8eA 116 4.21e+01 1g8eA a.145.1.1 60346 1yvhA 329 4.27e+01 1l3iA 192 4.30e+01 c.66.1.22 77676 1ez3A 127 4.31e+01 1dn1B a.47.2.1 17768 1nni1 174 4.32e+01 1bg1A 722 4.37e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1gjnA 153 4.39e+01 a.1.1.2 70191 1wf3A 301 4.41e+01 1td6A 306 4.42e+01 1uteA 313 4.45e+01 1uteA d.159.1.1 42078 1nw3A 416 4.46e+01 c.66.1.31 86288 1cuk 203 4.51e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1ofcX 304 4.58e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1b79A 119 4.66e+01 1b79A a.81.1.1 18451 1wmuB 146 4.66e+01 a.1.1.2 109417 1aisB 200 4.67e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 2essA 248 4.70e+01 2bjkA 516 4.72e+01 1xrtA 467 4.73e+01 1uzbA 516 4.74e+01 c.82.1.1 100220 2dh4A 340 4.81e+01 1m6jA 261 4.82e+01 c.1.1.1 78693 1elwA 118 4.83e+01 1a17 a.118.8.1 19207 1g87A 614 4.89e+01 a.102.1.2,b.2.2.2 83275,83276 1qhdA 398 4.94e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1kr7A 110 4.99e+01 a.1.1.4 72890 2aheA 267 5.02e+01 1x6fA 88 5.06e+01 1xg7A 250 5.07e+01 1yrcA 414 5.07e+01 2fm9A 215 5.12e+01 1qpcA 279 5.17e+01 1fgkA d.144.1.7 41685 1ad1A 266 5.18e+01 1aj2 c.1.21.1 29668 1o5xA 248 5.23e+01 c.1.1.1 92528 1mlwA 301 5.29e+01 d.178.1.1 79289 1fm0D 81 5.32e+01 1fmaD d.15.3.1 37642 1ib2A 349 5.34e+01 1ib2A a.118.1.8 62141 1p4oA 322 5.43e+01 d.144.1.7 87775 1wwkA 307 5.44e+01 1cunA 213 5.49e+01 1cunA a.7.1.1,a.7.1.1 16313,16314 1f20A 435 5.50e+01 b.43.4.1,c.25.1.4 64932,64933 1oi7A 288 5.53e+01 c.2.1.8,c.23.4.1 87049,87050 1j5xA 342 5.54e+01 c.80.1.1 71591 1z2iA 358 5.55e+01 1b24A 188 5.57e+01 1b24A d.95.2.1,d.95.2.1 40573,40574 2au5A 139 5.57e+01 1d2fA 390 5.61e+01 1d2fA c.67.1.3 34411 1v5dA 386 5.64e+01 1qlpA 394 5.72e+01 1ovaA e.1.1.1 42628 1u67A 600 5.75e+01 a.93.1.2,g.3.11.1 107697,107698 1u6tA 121 5.78e+01 2brcA 214 5.80e+01 2czlA 272 5.95e+01 1kktA 511 5.96e+01 a.102.2.1 68687 2iv2X 715 5.99e+01 1rzl 91 6.00e+01 1rzl a.52.1.1 17817 2fk8A 318 6.11e+01 1oyc 400 6.22e+01 1oyc c.1.4.1 28603 2gnoA 305 6.29e+01 1ie9A 259 6.32e+01 1db1A a.123.1.1 62318 2ga1A 106 6.33e+01 1txlA 215 6.36e+01 b.60.1.4 107429 2aaoA 166 6.37e+01 2dc3A 193 6.38e+01 2abk 211 6.39e+01 2abk a.96.1.1 18743 1s35A 214 6.42e+01 a.7.1.1,a.7.1.1 98420,98421 1xuuA 349 6.47e+01 1xtyA 120 6.47e+01 2bg9A 370 6.55e+01 3sdhA 146 6.67e+01 3sdhA a.1.1.2 14984 1ucpA 91 6.70e+01 a.77.1.5 99186 2f1kA 279 6.72e+01 1l5oA 356 6.76e+01 c.39.1.1 77711 1lw7A 365 6.77e+01 c.26.1.3,c.37.1.1 74295,74296 1dceB 331 6.78e+01 1dceB a.102.4.3 18872 1tqhA 247 6.78e+01 c.69.1.29 107225 2arhA 203 6.83e+01 1xdzA 240 6.93e+01 1iznB 277 6.94e+01 e.43.1.2 83848 1v54I 73 7.02e+01 f.23.3.1 100330 1or0A 160 7.08e+01 d.153.1.2 93445 1onwA 390 7.14e+01 b.92.1.7,c.1.9.13 87172,87173 1ud0A 113 7.18e+01 a.8.4.1 99198 1wn2A 121 7.25e+01 1tx9A 151 7.31e+01 1yfsA 465 7.31e+01 1kkhA 317 7.41e+01 d.14.1.5,d.58.26.3 72645,72646 1poiA 317 7.47e+01 1poiA c.124.1.2 34153 1x8bA 289 7.48e+01 1gesA 450 7.51e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2amlA 373 7.59e+01 1a8s 273 7.60e+01 1brt c.69.1.12 34710 1hlvA 131 7.63e+01 a.4.1.7,a.4.1.7 65854,65855 2bykA 140 7.65e+01 1cliA 345 7.69e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1ifqA 138 7.73e+01 1ifqA d.110.4.1 62350 1oheA 348 7.83e+01 c.45.1.1,c.45.1.1 87013,87014 1hn4A 131 7.85e+01 a.133.1.2 65893 2c3nA 247 7.86e+01 1b43A 340 7.88e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1p1xA 260 7.94e+01 c.1.10.1 104060 1dxy 333 7.99e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 2bzlA 325 7.99e+01 1yt3A 375 8.07e+01 1z7lA 276 8.09e+01 2lhb 149 8.10e+01 2fal a.1.1.2 15597 1euhA 475 8.14e+01 1euhA c.82.1.1 35369 1i58A 189 8.15e+01 1b3qA d.122.1.3 61773 1aky 221 8.15e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1m2kA 249 8.18e+01 c.31.1.5 84754 2bcfA 276 8.21e+01 1d2zB 153 8.23e+01 1d2zB a.77.1.2 18439 2fgoA 82 8.29e+01 1y7lA 316 8.35e+01 1bgp 309 8.35e+01 1bgp a.93.1.1 18690 1thg 544 8.49e+01 1thg c.69.1.17 34763 1rkuA 206 8.50e+01 c.108.1.11 97627 1j8uA 325 8.51e+01 d.178.1.1 71611 1lki 180 8.54e+01 1lki a.26.1.1 16829 1uqtA 482 8.70e+01 c.87.1.6 99794 1scfA 273 8.70e+01 1exzA a.26.1.2 16873 1hs6A 611 8.72e+01 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 2acvA 463 8.73e+01 1wy0A 342 8.78e+01 1a41 234 8.81e+01 1a41 d.163.1.2 42174 1ji7A 89 8.81e+01 a.60.1.1 71682 2affB 44 8.83e+01 2eucA 130 8.89e+01 1wuiL 534 8.91e+01 1ubkL 534 8.91e+01 e.18.1.1 88422 2btdA 210 8.92e+01 1ggzA 148 8.93e+01 a.39.1.5 70176 1x6iA 91 8.99e+01 1go3F 107 9.00e+01 a.60.8.2 65407