# TARGET T0369 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0369.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 124 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.005 0.003 0.003 0.032 0.045 0.912 2 T 0.011 0.008 0.003 0.246 0.061 0.671 3 D 0.009 0.008 0.006 0.584 0.063 0.330 4 W 0.002 0.001 0.004 0.959 0.014 0.019 5 Q 0.002 0.001 0.003 0.982 0.006 0.006 6 Q 0.001 0.001 0.003 0.989 0.005 0.002 7 A 0.001 0.001 0.002 0.993 0.002 0.002 8 L 0.001 0.001 0.003 0.991 0.003 0.003 9 D 0.001 0.001 0.007 0.977 0.008 0.008 10 R 0.001 0.001 0.008 0.963 0.014 0.013 11 H 0.003 0.001 0.010 0.912 0.031 0.042 12 V 0.005 0.001 0.013 0.880 0.044 0.056 13 G 0.008 0.001 0.017 0.796 0.074 0.103 14 V 0.009 0.001 0.018 0.872 0.043 0.057 15 G 0.019 0.003 0.011 0.826 0.046 0.094 16 V 0.007 0.001 0.006 0.935 0.019 0.033 17 R 0.008 0.001 0.006 0.959 0.010 0.016 18 T 0.006 0.001 0.006 0.972 0.008 0.009 19 T 0.008 0.001 0.004 0.956 0.009 0.022 20 R 0.003 0.001 0.004 0.985 0.004 0.004 21 D 0.004 0.001 0.007 0.977 0.007 0.004 22 L 0.002 0.001 0.008 0.979 0.006 0.005 23 I 0.002 0.001 0.022 0.944 0.024 0.007 24 R 0.004 0.001 0.028 0.871 0.063 0.033 25 L 0.010 0.004 0.015 0.309 0.160 0.501 26 I 0.011 0.024 0.002 0.037 0.121 0.805 27 Q 0.006 0.005 0.001 0.001 0.038 0.948 28 P 0.002 0.001 0.732 0.191 0.045 0.030 29 E 0.005 0.001 0.764 0.149 0.062 0.019 30 D 0.007 0.003 0.693 0.218 0.066 0.012 31 W 0.012 0.008 0.230 0.545 0.132 0.074 32 D 0.014 0.006 0.106 0.527 0.203 0.145 33 K 0.036 0.021 0.035 0.135 0.281 0.492 34 R 0.040 0.034 0.010 0.022 0.179 0.714 35 P 0.027 0.067 0.020 0.011 0.216 0.658 36 I 0.021 0.043 0.030 0.007 0.532 0.366 37 S 0.016 0.018 0.019 0.009 0.591 0.348 38 G 0.012 0.004 0.012 0.012 0.505 0.455 39 K 0.057 0.028 0.010 0.039 0.382 0.484 40 R 0.103 0.055 0.003 0.088 0.134 0.617 41 S 0.115 0.041 0.002 0.289 0.039 0.514 42 V 0.001 0.001 0.001 0.995 0.001 0.002 43 Y 0.001 0.001 0.001 0.997 0.001 0.001 44 E 0.001 0.001 0.001 0.998 0.001 0.001 45 V 0.001 0.001 0.001 0.998 0.001 0.001 46 A 0.001 0.001 0.001 0.998 0.001 0.001 47 V 0.001 0.001 0.001 0.997 0.001 0.001 48 H 0.001 0.001 0.002 0.997 0.001 0.001 49 L 0.001 0.001 0.002 0.997 0.001 0.001 50 A 0.001 0.001 0.003 0.996 0.001 0.001 51 V 0.001 0.001 0.005 0.989 0.002 0.003 52 L 0.001 0.001 0.010 0.974 0.007 0.008 53 L 0.001 0.001 0.011 0.970 0.010 0.008 54 E 0.001 0.001 0.012 0.968 0.009 0.010 55 A 0.002 0.001 0.013 0.958 0.013 0.014 56 D 0.003 0.001 0.015 0.948 0.015 0.019 57 L 0.003 0.001 0.027 0.938 0.021 0.010 58 R 0.004 0.001 0.031 0.925 0.028 0.011 59 I 0.003 0.001 0.028 0.920 0.033 0.015 60 A 0.004 0.003 0.020 0.882 0.065 0.027 61 T 0.003 0.002 0.013 0.742 0.116 0.124 62 G 0.003 0.002 0.010 0.109 0.253 0.624 63 A 0.008 0.008 0.022 0.085 0.274 0.604 64 T 0.027 0.018 0.022 0.080 0.250 0.603 65 A 0.020 0.008 0.046 0.230 0.238 0.457 66 D 0.021 0.005 0.066 0.516 0.157 0.233 67 E 0.028 0.004 0.086 0.712 0.107 0.063 68 M 0.061 0.008 0.067 0.627 0.141 0.097 69 A 0.081 0.013 0.057 0.581 0.130 0.138 70 Q 0.086 0.013 0.058 0.539 0.123 0.181 71 F 0.061 0.010 0.057 0.439 0.161 0.273 72 Y 0.038 0.010 0.028 0.409 0.169 0.345 73 A 0.045 0.015 0.023 0.186 0.227 0.504 74 V 0.044 0.015 0.015 0.088 0.249 0.589 75 P 0.035 0.015 0.017 0.047 0.239 0.647 76 V 0.027 0.037 0.011 0.051 0.175 0.699 77 L 0.011 0.012 0.003 0.053 0.097 0.824 78 P 0.001 0.001 0.021 0.928 0.020 0.030 79 E 0.001 0.001 0.019 0.970 0.008 0.003 80 Q 0.001 0.001 0.023 0.965 0.009 0.002 81 L 0.001 0.001 0.009 0.982 0.005 0.004 82 V 0.001 0.001 0.006 0.985 0.004 0.004 83 D 0.001 0.001 0.006 0.982 0.007 0.005 84 R 0.001 0.001 0.005 0.981 0.007 0.007 85 L 0.001 0.001 0.004 0.983 0.006 0.007 86 D 0.001 0.001 0.010 0.959 0.017 0.013 87 Q 0.001 0.001 0.007 0.963 0.016 0.013 88 S 0.001 0.001 0.004 0.963 0.011 0.020 89 W 0.001 0.001 0.004 0.985 0.005 0.005 90 Q 0.001 0.001 0.008 0.981 0.006 0.004 91 Y 0.001 0.001 0.008 0.976 0.009 0.007 92 Y 0.001 0.001 0.014 0.957 0.017 0.010 93 Q 0.002 0.001 0.021 0.932 0.028 0.017 94 D 0.002 0.001 0.039 0.875 0.049 0.035 95 R 0.006 0.004 0.046 0.745 0.101 0.098 96 L 0.012 0.010 0.044 0.627 0.091 0.215 97 M 0.008 0.003 0.089 0.722 0.087 0.092 98 A 0.008 0.001 0.148 0.663 0.106 0.073 99 D 0.010 0.003 0.152 0.629 0.139 0.068 100 F 0.011 0.004 0.182 0.565 0.169 0.068 101 S 0.018 0.003 0.139 0.495 0.219 0.126 102 T 0.044 0.009 0.120 0.287 0.296 0.244 103 E 0.096 0.031 0.052 0.170 0.251 0.400 104 T 0.122 0.045 0.031 0.085 0.231 0.486 105 T 0.092 0.035 0.031 0.050 0.327 0.465 106 Y 0.067 0.025 0.054 0.047 0.626 0.181 107 W 0.051 0.017 0.035 0.044 0.669 0.183 108 G 0.026 0.007 0.023 0.026 0.698 0.221 109 V 0.067 0.027 0.010 0.030 0.507 0.360 110 T 0.078 0.042 0.008 0.029 0.204 0.640 111 D 0.053 0.051 0.006 0.061 0.233 0.596 112 S 0.021 0.012 0.007 0.208 0.117 0.635 113 T 0.003 0.001 0.004 0.970 0.008 0.015 114 T 0.002 0.001 0.003 0.984 0.005 0.006 115 G 0.001 0.001 0.002 0.990 0.003 0.004 116 W 0.002 0.001 0.002 0.991 0.002 0.002 117 L 0.001 0.001 0.002 0.994 0.002 0.001 118 L 0.001 0.001 0.002 0.992 0.003 0.001 119 E 0.002 0.001 0.003 0.987 0.005 0.002 120 A 0.002 0.001 0.004 0.985 0.006 0.003 121 A 0.003 0.001 0.006 0.979 0.008 0.004 122 V 0.002 0.001 0.006 0.962 0.015 0.014 123 H 0.002 0.001 0.006 0.941 0.015 0.034 124 L 0.002 0.001 0.007 0.953 0.012 0.024 125 Y 0.002 0.001 0.010 0.963 0.011 0.013 126 H 0.001 0.001 0.010 0.957 0.015 0.015 127 H 0.001 0.001 0.008 0.973 0.008 0.010 128 R 0.001 0.001 0.005 0.985 0.005 0.005 129 S 0.001 0.001 0.004 0.987 0.005 0.004 130 Q 0.001 0.001 0.002 0.994 0.002 0.001 131 L 0.001 0.001 0.001 0.998 0.001 0.001 132 L 0.001 0.001 0.001 0.999 0.001 0.001 133 D 0.001 0.001 0.001 0.999 0.001 0.001 134 Y 0.001 0.001 0.001 0.999 0.001 0.001 135 L 0.001 0.001 0.001 0.998 0.001 0.001 136 N 0.001 0.001 0.003 0.995 0.001 0.001 137 L 0.001 0.001 0.005 0.991 0.002 0.002 138 L 0.001 0.001 0.004 0.972 0.005 0.019 139 G 0.001 0.001 0.002 0.018 0.025 0.955 140 Y 0.004 0.006 0.003 0.004 0.061 0.922 141 D 0.030 0.016 0.007 0.005 0.111 0.832 142 I 0.033 0.037 0.012 0.009 0.178 0.731 143 K 0.032 0.030 0.024 0.013 0.272 0.630 144 L 0.037 0.011 0.164 0.033 0.366 0.389 145 D 0.057 0.016 0.212 0.061 0.351 0.304 146 L 0.050 0.030 0.201 0.091 0.316 0.312 147 F 0.039 0.035 0.020 0.040 0.210 0.655 148 E 0.030 0.008 0.008 0.025 0.170 0.759