# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2f22A 144 3.73e-15 1rxqA 178 2.53e-08 a.213.1.1 105118 1ufoA 238 1.43e+00 c.69.1.27 99344 1txoA 237 1.49e+00 4xis 387 2.50e+00 4xis c.1.15.3 29421 1u2xA 474 2.63e+00 c.72.1.3 107622 1u1hA 765 3.04e+00 c.1.22.2,c.1.22.2 107580,107581 1u1jA 765 3.92e+00 c.1.22.2,c.1.22.2 107590,107591 1pv1A 299 4.94e+00 2a5yA 204 4.95e+00 3xis 387 6.32e+00 4xis c.1.15.3 29423 1lwjA 441 6.43e+00 b.71.1.1,c.1.8.1 74303,74304 1ztcA 221 6.57e+00 1wu3I 161 6.98e+00 1e85A 127 9.06e+00 1bbhA a.24.3.2 16549 2b8nA 429 9.65e+00 1ezfA 340 9.77e+00 1ezfA a.128.1.2 19440 1o0uA 429 9.81e+00 c.118.1.1 80743 1qpcA 279 1.03e+01 1fgkA d.144.1.7 41685 2a65A 519 1.23e+01 1yz1A 174 1.28e+01 1ubkL 534 1.34e+01 e.18.1.1 88422 1wuiL 534 1.36e+01 1ix9A 205 1.42e+01 a.2.11.1,d.44.1.1 76899,76900 1rkuA 206 1.48e+01 c.108.1.11 97627 1z3iX 644 1.48e+01 1i0hA 205 1.51e+01 1avmA a.2.11.1,d.44.1.1 15760,38685 2fflA 756 1.52e+01 1o5hA 214 1.53e+01 a.191.1.1 92497 2fl7A 232 1.55e+01 2fiyA 309 1.58e+01 1uk5A 111 1.69e+01 a.7.7.1 99487 1ozhA 566 1.86e+01 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1j3gA 187 1.89e+01 d.118.1.1 77075 1eiwA 111 2.04e+01 1eiwA c.23.3.1 31130 1xc3A 302 2.10e+01 1eayC 74 2.12e+01 1eayC d.58.24.1 39386 1muwA 386 2.13e+01 c.1.15.3 79495 2d1eA 248 2.28e+01 2arhA 203 2.32e+01 1pujA 282 2.38e+01 c.37.1.8 88294 1gp6A 356 2.45e+01 b.82.2.1 65441 2h58A 330 2.57e+01 2g8yA 385 2.62e+01 1sxvA 172 2.70e+01 2awaA 390 2.72e+01 1xrhA 351 2.75e+01 1z6aA 500 2.79e+01 1tjlA 151 2.85e+01 a.2.14.1,g.39.1.13 107027,107028 1nz6A 101 2.94e+01 a.2.3.1 86441 1ug6A 431 3.07e+01 c.1.8.4 88490 1hkxA 147 3.12e+01 d.17.4.7 83567 1e3aB 560 3.12e+01 1ajqB 1ybxA 143 3.16e+01 1lst 239 3.20e+01 1lst c.94.1.1 35755 1vns 609 3.20e+01 1vns a.111.1.3 19061 1ukvG 453 3.23e+01 c.3.1.3,c.3.1.3,d.16.1.6 107915,107916,107917 1gk9B 557 3.29e+01 1n9bA 265 3.31e+01 e.3.1.1 85463 1sqgA 429 3.34e+01 a.79.1.3,c.66.1.38 105912,105913 1z7lA 276 3.37e+01 1kqfB 294 3.43e+01 d.58.1.5,f.23.22.1 75900,75901 1c02A 166 3.45e+01 1qspA a.24.10.2 16633 1pi4A 358 3.46e+01 e.3.1.1 94700 2ffyA 358 3.57e+01 1pi1A 185 3.57e+01 a.29.7.1 94699 1vjyA 303 3.63e+01 d.144.1.7 108633 1fvrA 327 3.67e+01 d.144.1.7 60047 1vjtA 483 3.72e+01 c.2.1.5,d.162.1.2 100833,100834 1lrv 244 3.82e+01 1lrv a.118.1.5 19146 1uocA 289 3.86e+01 c.55.3.9 99686 1rdr 461 3.91e+01 1rdr e.8.1.4 43116 1py5A 326 3.92e+01 d.144.1.7 104389 1z63A 500 3.98e+01 4crxA 322 4.04e+01 4crxA a.60.9.1,d.163.1.1 18095,42155 1ithA 141 4.05e+01 1ithA a.1.1.2 15623 3nul 130 4.11e+01 3nul d.110.1.1 40891 2g3kA 94 4.13e+01 2bcgG 453 4.13e+01 1jjeA 222 4.16e+01 1a7tA d.157.1.1 63117 1paz 123 4.19e+01 1bqk b.6.1.1 22878 2aysA 348 4.20e+01 1jb0A 755 4.23e+01 1jb0A f.29.1.1 62820 1h2rL 534 4.40e+01 1h2rL e.18.1.1 43298 1oohA 126 4.58e+01 a.39.2.1 93383 1wkbA 810 4.69e+01 1o9rA 162 4.69e+01 a.25.1.1 86706 1mtpA 323 4.87e+01 e.1.1.1 85107 1u9yA 284 4.92e+01 1h3fA 432 4.97e+01 c.26.1.1,d.66.1.4 76631,76632 1n6zA 105 5.04e+01 d.263.1.1 85369 1sfe 180 5.10e+01 1sfe a.4.2.1,c.55.7.1 16073,33748 1yw3A 208 5.13e+01 1pgjA 478 5.15e+01 2pgd a.100.1.1,c.2.1.6 18783,30195 1ngnA 155 5.16e+01 a.96.1.2 85697 1a0fA 201 5.28e+01 1a0fA a.45.1.1,c.47.1.5 17737,33031 1nkxA 348 5.38e+01 c.94.1.2 91943 1zxxA 319 5.40e+01 2bg1A 494 5.44e+01 1mv3A 213 5.58e+01 b.34.2.1 91468 1f3mC 297 5.64e+01 1hcl d.144.1.7 41677 1jj2I 145 5.85e+01 1ffkG c.21.1.1 63094 2polA 366 5.90e+01 2polA d.131.1.1,d.131.1.1,d.131.1.1 41356,41357,41358 1f3aA 222 5.94e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 1djxA 624 5.97e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 1fsyA 358 6.04e+01 1gceA e.3.1.1 60016 1g3mA 294 6.18e+01 c.37.1.5 83268 1ci9A 392 6.24e+01 e.3.1.1 64767 1y8oA 419 6.40e+01 1hlb 158 6.42e+01 1hlb a.1.1.2 15625 1z8oA 404 6.53e+01 1tc5A 194 6.60e+01 c.110.1.1 106752 1rd5A 262 6.66e+01 1jjtA 228 7.01e+01 1a7tA d.157.1.1 63139 1wv8A 73 7.10e+01 2gz4A 207 7.27e+01 1q48A 134 7.31e+01 d.224.1.2 95783 1p90A 145 7.38e+01 c.55.5.2 94377 1s6yA 450 7.48e+01 c.2.1.5,d.162.1.2 105314,105315 1eemA 241 7.55e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1x99A 145 7.75e+01 1b4fA 82 7.93e+01 1b4fA a.60.1.2 17934 1j09A 468 8.00e+01 a.97.1.1,c.26.1.1 77025,77026 1o66A 275 8.05e+01 c.1.12.8 92547 1qu9A 128 8.06e+01 1qu9A d.79.1.1 39755 1xo0A 324 8.07e+01 1poiA 317 8.14e+01 1poiA c.124.1.2 34153 1zs3A 182 8.18e+01 1up7A 417 8.19e+01 2f6hX 419 8.19e+01 1n5dA 288 8.32e+01 c.2.1.2 80030 1hu4A 288 8.35e+01 1hu4A 1fecA 490 8.40e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 2f4lA 297 8.49e+01 1qlpA 394 8.49e+01 1ovaA e.1.1.1 42628 1l0gA 358 8.52e+01 e.3.1.1 73400 1fwxA 595 8.60e+01 b.6.1.4,b.69.3.1 60069,60070 1b43A 340 8.64e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1ok7A 366 8.65e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1udh 244 8.66e+01 3eugA c.18.1.1 31015 1tfzA 424 8.67e+01 d.32.1.3,d.32.1.3 106886,106887 1n2aA 201 8.71e+01 a.45.1.1,c.47.1.5 91553,91554 2aieP 203 8.74e+01 2etjA 250 8.77e+01 1r6dA 337 8.79e+01 c.2.1.2 97148 1npsA 88 8.79e+01 1prs b.11.1.1 23622 1neiA 60 8.87e+01 d.253.1.1 91843 1viaA 175 8.88e+01 c.37.1.2 100754 2ck3A 510 8.93e+01 2a9fA 398 8.94e+01