# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1na3A 91 1.08e-02 k.38.1.1 85481 2fbnA 198 1.66e-02 1elwA 118 1.90e-02 1a17 a.118.8.1 19207 1oshA 232 1.65e-01 a.123.1.1 93496 1ihgA 370 2.85e-01 2cpl a.118.8.1,b.62.1.1 62380,62381 2ff4A 388 4.07e-01 1hz4A 373 7.73e-01 a.118.8.2 65960 1za0A 275 7.75e-01 1txgA 335 1.09e+00 1mswD 883 2.32e+00 e.8.1.3 79427 1x0lA 333 3.09e+00 1w36B 1180 3.28e+00 1w79A 489 3.30e+00 1elrA 131 3.45e+00 1a17 a.118.8.1 19209 2d29A 387 3.53e+00 2cqsA 842 3.78e+00 1paqA 189 4.07e+00 a.118.1.14 94413 1x3lA 440 5.01e+00 1r9kA 172 5.06e+00 a.168.1.1 104869 2bl2A 156 5.20e+00 1dc1A 323 6.26e+00 1dc1A c.52.1.11 33321 1ovlA 271 6.51e+00 a.123.1.1 87455 1tujA 123 6.60e+00 1xnfA 275 7.21e+00 1u14A 172 7.77e+00 c.51.4.3 107579 1upvA 257 7.87e+00 1l3pA 102 7.96e+00 a.24.17.1 84520 1lfpA 249 8.01e+00 e.39.1.1 73885 1hh8A 213 8.03e+00 1e96B a.118.8.1 61042 1zejA 293 8.49e+00 1jb0A 755 9.67e+00 1jb0A f.29.1.1 62820 2gtrA 261 1.00e+01 1k3yA 221 1.06e+01 a.45.1.1,c.47.1.5 77245,77246 1z82A 335 1.14e+01 2a2mA 258 1.16e+01 1vlgA 176 1.23e+01 a.25.1.1 108816 1n46A 258 1.25e+01 a.123.1.1 85315 1orjA 130 1.37e+01 a.24.19.1 93456 1ydiA 263 1.40e+01 3lynA 136 1.40e+01 1lis a.19.1.1 16413 1x46A 150 1.41e+01 1knyA 253 1.46e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 2d2yA 145 1.46e+01 2bl0C 142 1.50e+01 1guxA 218 1.55e+01 1guxA a.74.1.3 18388 1ic2A 81 1.56e+01 h.1.5.1 62247 1wdcC 156 1.62e+01 1wdcC a.39.1.5 17317 2etbA 256 1.66e+01 2g0dA 409 1.68e+01 1rx0A 393 1.68e+01 a.29.3.1,e.6.1.1 98007,98008 1vf1A 229 1.70e+01 3gcb 470 1.81e+01 3gcb d.3.1.1 37032 1wm1A 317 1.83e+01 c.69.1.7 109405 1s4bP 674 1.84e+01 d.92.1.5 105252 1mlwA 301 1.95e+01 d.178.1.1 79289 1nz6A 101 1.99e+01 a.2.3.1 86441 2a61A 145 2.11e+01 1w53A 84 2.12e+01 a.186.1.2 109175 1lk9A 448 2.25e+01 c.67.1.1 78057 1f6fA 199 2.36e+01 1f6fA a.26.1.1 16839 1ve0A 134 2.40e+01 1anf 370 2.42e+01 4mbp c.94.1.1 35776 1u61A 138 2.42e+01 a.149.1.1 107696 1clc 639 2.46e+01 1clc a.102.1.2,b.1.18.2 18835,21872 1fjgT 106 2.59e+01 1fjfT a.7.6.1 16338 1ek9A 428 2.66e+01 1ek9A f.5.1.1 43809 1at3A 247 2.69e+01 1at3A b.57.1.1 27021 2bnxA 386 2.72e+01 1wy6A 172 2.77e+01 2f3yA 148 2.77e+01 1fnnA 389 2.78e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 2fldA 165 2.80e+01 2g7sA 194 2.80e+01 1yarA 233 2.94e+01 1khoA 370 2.97e+01 a.124.1.1,b.12.1.3 72489,72490 1i36A 264 3.10e+01 a.100.1.8,c.2.1.6 71108,71109 2b0jA 358 3.20e+01 1mtyG 162 3.21e+01 1mtyG a.23.3.1 16498 1xg7A 250 3.22e+01 1xdzA 240 3.33e+01 2cw9A 194 3.41e+01 1knvA 293 3.50e+01 c.52.1.7 68707 1xkpC 143 3.53e+01 1ka2A 499 3.54e+01 d.92.1.5 77305 1hqsA 423 3.58e+01 1iso c.77.1.1 61154 1ga3A 113 3.59e+01 1ga3A a.26.1.2 60411 2lisA 136 3.65e+01 1lis a.19.1.1 16405 1w5tA 412 3.67e+01 1t07A 94 3.81e+01 d.279.1.1 106196 1v54A 514 3.90e+01 f.24.1.1 100321 1lw1A 177 3.95e+01 a.152.1.1 74290 1nrgA 261 3.98e+01 b.45.1.1 80694 1vjoA 393 3.99e+01 c.67.1.3 100827 1jogA 146 4.02e+01 a.24.16.2 77142 1p68A 102 4.15e+01 k.8.1.1 94158 1su8A 636 4.16e+01 e.26.1.2 98999 1bx4A 345 4.24e+01 1bx4A c.72.1.1 34935 1s1fA 406 4.29e+01 1dqeA 137 4.36e+01 1dqeA a.39.2.1 17388 1nc5A 373 4.40e+01 a.102.1.6 85548 2gnoA 305 4.41e+01 1cby 259 4.42e+01 1cby d.103.1.1 40705 1cjwA 166 4.51e+01 1cjwA d.108.1.1 40818 1qf5A 431 4.61e+01 1adeA c.37.1.10 32212 2ethA 154 4.65e+01 2az0A 73 4.68e+01 1hn0A 1021 4.68e+01 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1n45A 233 4.81e+01 a.132.1.1 79981 2dg5A 366 4.85e+01 1iy8A 267 4.89e+01 c.2.1.2 83774 2c6cA 707 4.90e+01 1zx4A 192 4.91e+01 1zgyA 272 4.96e+01 1tw9A 206 5.00e+01 a.45.1.1,c.47.1.5 107381,107382 1wlmA 151 5.02e+01 1r0dA 206 5.10e+01 a.216.1.1 104715 1y97A 238 5.11e+01 1kkhA 317 5.24e+01 d.14.1.5,d.58.26.3 72645,72646 1sq5A 308 5.25e+01 c.37.1.6 105882 1evsA 187 5.28e+01 1evsA a.26.1.1 16845 1yueA 427 5.34e+01 1ra6A 461 5.45e+01 e.8.1.4 104879 1ow4A 129 5.47e+01 a.39.2.1 93628 2fmpA 335 5.49e+01 1zy4A 303 5.54e+01 2awiA 317 5.77e+01 1ugpB 226 5.80e+01 b.34.4.4 107832 1nt2A 210 5.91e+01 c.66.1.3 86149 256bA 106 5.98e+01 256bA a.24.3.1 16539 1eemA 241 5.98e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1x91A 153 6.07e+01 1vkuA 100 6.18e+01 a.28.1.1 108690 1yrcA 414 6.18e+01 1bc5A 269 6.40e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1ggzA 148 6.42e+01 a.39.1.5 70176 1oq9A 363 6.53e+01 a.25.1.2 87257 1gwuA 309 6.56e+01 a.93.1.1 83351 2bt6A 108 6.59e+01 2gd5A 179 6.63e+01 1lycA 343 6.67e+01 a.93.1.1 74344 1yb0A 159 6.67e+01 2btdA 210 6.72e+01 1xteA 154 6.79e+01 1r12A 258 6.82e+01 e.4.1.1 96780 1vmaA 306 6.82e+01 a.24.13.1,c.37.1.10 108887,108888 1uesA 191 6.91e+01 a.2.11.1,d.44.1.1 107798,107799 2gaiA 633 7.05e+01 1ppjF 110 7.05e+01 f.27.1.1 104262 1yc9A 442 7.10e+01 1n83A 270 7.13e+01 a.123.1.1 80276 1bdb 277 7.19e+01 1bdb c.2.1.2 29874 1j8uA 325 7.28e+01 d.178.1.1 71611 1vkfA 188 7.46e+01 c.1.29.1 108656 1zx1A 231 7.51e+01 1i4dA 224 7.53e+01 h.4.7.1 61682 1k04A 162 7.54e+01 a.24.14.1 67904 1h16A 759 7.57e+01 c.7.1.1 76462 1i5nA 146 7.57e+01 1i5nA a.24.10.3 61805 1wqwA 235 7.58e+01 1nxhA 126 7.60e+01 a.200.1.1 92300 1q7lA 198 7.63e+01 c.56.5.4 96044 1zv1A 65 7.71e+01 1yfsA 465 7.73e+01 1n40A 396 7.80e+01 a.104.1.1 79977 1rss 151 7.81e+01 1rss a.75.1.1 18392 1af7 274 7.82e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 2c2aA 258 7.82e+01 1ek0A 170 7.82e+01 1ctqA c.37.1.8 32076 1vhrA 184 7.83e+01 1vhrA c.45.1.1 32651 2anxA 146 7.89e+01 1u2eA 289 7.91e+01 1exrA 148 8.06e+01 1cll a.39.1.5 17299 1iqrA 420 8.12e+01 a.99.1.1,c.28.1.1 66275,66276 1jztA 246 8.19e+01 c.104.1.1 63319 1zsqA 528 8.24e+01 2bk9A 153 8.34e+01 1rq6A 62 8.37e+01 2fk8A 318 8.37e+01 1q1oA 98 8.42e+01 d.15.2.2 95596 1wgzA 510 8.42e+01 1i2tA 61 8.48e+01 1i2tA a.144.1.1 61582 1e4iA 447 8.50e+01 1e70M c.1.8.4 59225 2b6cA 220 8.50e+01 1qo0D 196 8.54e+01 1qo0D c.23.1.3 31125 2aq9A 262 8.69e+01 1w0dA 337 8.83e+01 1izcA 339 8.87e+01 c.1.12.5 83838 1mun 225 8.88e+01 1mun a.96.1.2 18744 2cfuA 658 8.93e+01 1v54E 109 8.93e+01 a.118.11.1 100326