# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1na3A 91 5.18e-03 k.38.1.1 85481 2fbnA 198 7.61e-03 1elwA 118 9.41e-03 1a17 a.118.8.1 19207 1oshA 232 1.24e-01 a.123.1.1 93496 1ihgA 370 1.80e-01 2cpl a.118.8.1,b.62.1.1 62380,62381 1hz4A 373 3.64e-01 a.118.8.2 65960 2ff4A 388 9.72e-01 1x0lA 333 1.89e+00 1za0A 275 2.03e+00 1tujA 123 2.31e+00 1w36B 1180 2.62e+00 1upvA 257 2.89e+00 2dg5A 366 3.28e+00 1txgA 335 3.35e+00 1n46A 258 3.47e+00 a.123.1.1 85315 1ovlA 271 4.16e+00 a.123.1.1 87455 1w79A 489 4.51e+00 1mlwA 301 4.65e+00 d.178.1.1 79289 1hh8A 213 4.78e+00 1e96B a.118.8.1 61042 1elrA 131 4.79e+00 1a17 a.118.8.1 19209 1paqA 189 5.28e+00 a.118.1.14 94413 1xnfA 275 5.37e+00 1ux5A 411 6.54e+00 a.207.1.1 100144 3lynA 136 6.58e+00 1lis a.19.1.1 16413 1ydiA 263 7.47e+00 2gtrA 261 7.56e+00 2f3yA 148 7.70e+00 1x3lA 440 8.53e+00 1vf1A 229 8.59e+00 1clc 639 8.61e+00 1clc a.102.1.2,b.1.18.2 18835,21872 1vlgA 176 9.54e+00 a.25.1.1 108816 1fnnA 389 1.02e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1mswD 883 1.05e+01 e.8.1.3 79427 2d2yA 145 1.08e+01 1orjA 130 1.15e+01 a.24.19.1 93456 2cqsA 842 1.22e+01 1xg7A 250 1.25e+01 2g0dA 409 1.31e+01 2lisA 136 1.31e+01 1lis a.19.1.1 16405 2a2mA 258 1.33e+01 1ra6A 461 1.42e+01 e.8.1.4 104879 1knyA 253 1.43e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1nrgA 261 1.55e+01 b.45.1.1 80694 1jb0A 755 1.55e+01 1jb0A f.29.1.1 62820 1u14A 172 1.57e+01 c.51.4.3 107579 1ek9A 428 1.59e+01 1ek9A f.5.1.1 43809 2bl2A 156 1.60e+01 1nz6A 101 1.63e+01 a.2.3.1 86441 1gwuA 309 1.64e+01 a.93.1.1 83351 2bl0C 142 1.67e+01 1fjgT 106 1.68e+01 1fjfT a.7.6.1 16338 1dc1A 323 1.76e+01 1dc1A c.52.1.11 33321 1ggzA 148 1.77e+01 a.39.1.5 70176 1lvaA 258 1.82e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2awiA 317 1.87e+01 1lfpA 249 1.90e+01 e.39.1.1 73885 1z82A 335 1.95e+01 1x46A 150 1.96e+01 1exrA 148 2.00e+01 1cll a.39.1.5 17299 1r0dA 206 2.04e+01 a.216.1.1 104715 1lk9A 448 2.11e+01 c.67.1.1 78057 1khoA 370 2.12e+01 a.124.1.1,b.12.1.3 72489,72490 2d29A 387 2.18e+01 1e4iA 447 2.25e+01 1e70M c.1.8.4 59225 1mtyG 162 2.28e+01 1mtyG a.23.3.1 16498 1ic2A 81 2.35e+01 h.1.5.1 62247 1r12A 258 2.35e+01 e.4.1.1 96780 2gaiA 633 2.45e+01 1i4dA 224 2.52e+01 h.4.7.1 61682 1kcfA 258 2.53e+01 a.140.2.1,c.55.3.7 68434,68435 1w5tA 412 2.59e+01 3gcb 470 2.67e+01 3gcb d.3.1.1 37032 1nc5A 373 2.70e+01 a.102.1.6 85548 1qlpA 394 2.80e+01 1ovaA e.1.1.1 42628 1u61A 138 2.83e+01 a.149.1.1 107696 1j8uA 325 2.83e+01 d.178.1.1 71611 1wdcC 156 2.86e+01 1wdcC a.39.1.5 17317 1xdzA 240 2.98e+01 1ugpB 226 3.02e+01 b.34.4.4 107832 1k3yA 221 3.04e+01 a.45.1.1,c.47.1.5 77245,77246 1zy4A 303 3.04e+01 1l3pA 102 3.26e+01 a.24.17.1 84520 1n1fA 159 3.31e+01 a.26.1.3 79803 1r9kA 172 3.36e+01 a.168.1.1 104869 1pb6A 212 3.38e+01 a.4.1.9,a.121.1.1 88017,88018 1w0dA 337 3.43e+01 1uhgA 385 3.44e+01 e.1.1.1 88491 1f6fA 199 3.45e+01 1f6fA a.26.1.1 16839 1n45A 233 3.47e+01 a.132.1.1 79981 2c2aA 258 3.53e+01 1w53A 84 3.54e+01 a.186.1.2 109175 2g7sA 194 3.58e+01 2az0A 73 3.69e+01 1nigA 152 3.72e+01 a.25.2.1 85740 1yarA 233 3.74e+01 1a0cA 438 3.82e+01 1a0cA c.1.15.3 29529 1xtpA 254 3.84e+01 1twfB 1224 3.85e+01 1wvfA 520 3.92e+01 1xteA 154 3.93e+01 1wy6A 172 3.97e+01 1h8eA 510 4.06e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1i5nA 146 4.13e+01 1i5nA a.24.10.3 61805 1xo0A 324 4.28e+01 1zx4A 192 4.30e+01 1pu6A 218 4.32e+01 a.96.1.5 95123 1uesA 191 4.33e+01 a.2.11.1,d.44.1.1 107798,107799 1aisB 200 4.41e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 2c6cA 707 4.45e+01 1at3A 247 4.56e+01 1at3A b.57.1.1 27021 1joyA 67 4.60e+01 1joyA a.30.2.1 16991 1ib2A 349 4.62e+01 1ib2A a.118.1.8 62141 1ga3A 113 4.65e+01 1ga3A a.26.1.2 60411 1ym3A 215 4.71e+01 1ho8A 480 4.74e+01 1ho8A a.118.1.9 61107 1wchA 315 4.90e+01 1yfsA 465 4.93e+01 1wz9A 375 4.94e+01 1jogA 146 5.03e+01 a.24.16.2 77142 1fcyA 236 5.13e+01 2lbd a.123.1.1 19282 1wkuA 254 5.19e+01 1ve0A 134 5.22e+01 1lw1A 177 5.23e+01 a.152.1.1 74290 1v54E 109 5.24e+01 a.118.11.1 100326 2d3dA 88 5.32e+01 1avsA 90 5.34e+01 1cll a.39.1.5 17226 1anf 370 5.39e+01 4mbp c.94.1.1 35776 1zsqA 528 5.45e+01 1x3kA 152 5.47e+01 1t07A 94 5.59e+01 d.279.1.1 106196 2ghjA 118 5.68e+01 1kkhA 317 5.70e+01 d.14.1.5,d.58.26.3 72645,72646 1rx0A 393 5.71e+01 a.29.3.1,e.6.1.1 98007,98008 2g3bA 208 5.77e+01 1bx4A 345 5.83e+01 1bx4A c.72.1.1 34935 1su8A 636 5.84e+01 e.26.1.2 98999 1v4xB 146 5.84e+01 a.1.1.2 108364 1w7jB 151 5.92e+01 2ethA 154 5.94e+01 1x91A 153 6.11e+01 1r9dA 787 6.12e+01 c.7.1.1 104865 2abqA 306 6.13e+01 1eu8A 409 6.20e+01 1eu8A c.94.1.1 59502 2cw9A 194 6.21e+01 1i1wA 303 6.25e+01 c.1.8.3 76732 1vkfA 188 6.29e+01 c.1.29.1 108656 1m7vA 363 6.30e+01 d.174.1.1 78748 2ck3A 510 6.39e+01 1wlmA 151 6.46e+01 1eemA 241 6.47e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1evsA 187 6.47e+01 1evsA a.26.1.1 16845 2crbA 97 6.56e+01 1n83A 270 6.57e+01 a.123.1.1 80276 1gu9A 177 6.57e+01 a.152.1.1 65540 1ouvA 273 6.59e+01 a.118.18.1 93570 1yueA 427 6.61e+01 1v0dA 329 6.66e+01 d.4.1.7 108204 1cxc 124 6.67e+01 1ycc a.3.1.1 15890 1rq6A 62 6.72e+01 1pl5A 142 6.82e+01 h.1.23.1 104186 1e1hB 174 6.82e+01 1p68A 102 6.87e+01 k.8.1.1 94158 1rzsA 61 6.88e+01 a.35.1.2 105139 1jznA 135 6.95e+01 d.169.1.1 84262 1l5oA 356 7.00e+01 c.39.1.1 77711 2etbA 256 7.03e+01 1i36A 264 7.11e+01 a.100.1.8,c.2.1.6 71108,71109 1w1wE 121 7.20e+01 1e9rA 437 7.23e+01 c.37.1.11 64827 2g7gA 213 7.26e+01 1kxpD 458 7.39e+01 a.126.1.1,a.126.1.1,a.126.1.1 73160,73161,73162 1nxhA 126 7.45e+01 a.200.1.1 92300 1knqA 175 7.54e+01 c.37.1.17 72786 2h21A 440 7.59e+01 1lq7A 67 7.61e+01 k.9.1.1 74183 1mla 309 7.63e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1f08A 148 7.73e+01 1f08A d.89.1.2 59564 1cby 259 7.74e+01 1cby d.103.1.1 40705 1yc9A 442 7.75e+01 1gqaA 130 7.77e+01 a.24.3.2 76275 2bo4A 397 7.80e+01 1uhnA 189 7.82e+01 a.39.1.5 99399 1ow4A 129 7.91e+01 a.39.2.1 93628 1ug7A 128 7.91e+01 a.24.24.1 107824 1uhkA 191 7.94e+01 1tuaA 191 8.02e+01 d.51.1.1,d.51.1.1 107321,107322 1wy9A 147 8.24e+01 1gpjA 404 8.31e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2f57A 317 8.41e+01 2pvbA 107 8.49e+01 1a75A a.39.1.4 17205 1xmeA 568 8.61e+01 1ppjF 110 8.69e+01 f.27.1.1 104262 1vzwA 244 8.70e+01 2fldA 165 8.84e+01 1iq8A 582 8.86e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1vkuA 100 8.86e+01 a.28.1.1 108690