# List of top-scoring protein chains for t06-100-30-bys-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1na3A 91 3.13e-03 k.38.1.1 85481 2fbnA 198 3.57e-03 1elwA 118 5.70e-03 1a17 a.118.8.1 19207 1ihgA 370 4.09e-02 2cpl a.118.8.1,b.62.1.1 62380,62381 1hz4A 373 1.07e-01 a.118.8.2 65960 1oshA 232 2.65e-01 a.123.1.1 93496 2ff4A 388 6.04e-01 2f3yA 148 9.61e-01 1x0lA 333 1.23e+00 1xnfA 275 1.30e+00 1elrA 131 1.31e+00 1a17 a.118.8.1 19209 1ovlA 271 1.47e+00 a.123.1.1 87455 1ggzA 148 2.19e+00 a.39.1.5 70176 1paqA 189 2.80e+00 a.118.1.14 94413 1yrcA 414 2.89e+00 1vlgA 176 2.90e+00 a.25.1.1 108816 1w36B 1180 2.93e+00 1mlwA 301 2.99e+00 d.178.1.1 79289 1tujA 123 3.74e+00 1txgA 335 3.82e+00 1uhkA 191 3.90e+00 1hh8A 213 3.93e+00 1e96B a.118.8.1 61042 1vf1A 229 4.16e+00 1ydiA 263 4.16e+00 1ux5A 411 4.20e+00 a.207.1.1 100144 1w79A 489 4.21e+00 2a2mA 258 4.51e+00 3lynA 136 4.62e+00 1lis a.19.1.1 16413 1n46A 258 4.65e+00 a.123.1.1 85315 1x46A 150 4.79e+00 1exrA 148 5.02e+00 1cll a.39.1.5 17299 1pb6A 212 5.12e+00 a.4.1.9,a.121.1.1 88017,88018 1avsA 90 5.29e+00 1cll a.39.1.5 17226 1ek9A 428 5.94e+00 1ek9A f.5.1.1 43809 1upvA 257 6.04e+00 1qv1A 195 6.52e+00 a.39.1.5 96347 1khoA 370 6.61e+00 a.124.1.1,b.12.1.3 72489,72490 1t2bA 397 6.92e+00 2dg5A 366 7.03e+00 1lfpA 249 8.37e+00 e.39.1.1 73885 1dc1A 323 8.45e+00 1dc1A c.52.1.11 33321 1ouvA 273 8.89e+00 a.118.18.1 93570 1fjgT 106 9.40e+00 1fjfT a.7.6.1 16338 2g7gA 213 1.02e+01 1ppjF 110 1.12e+01 f.27.1.1 104262 2lisA 136 1.14e+01 1lis a.19.1.1 16405 1urvA 190 1.21e+01 1yfsA 465 1.23e+01 1mswD 883 1.25e+01 e.8.1.3 79427 1np3A 338 1.26e+01 a.100.1.2,c.2.1.6 85946,85947 2awiA 317 1.26e+01 1uzbA 516 1.27e+01 c.82.1.1 100220 1ve0A 134 1.27e+01 2bjkA 516 1.27e+01 2crbA 97 1.36e+01 1p68A 102 1.38e+01 k.8.1.1 94158 1lk9A 448 1.38e+01 c.67.1.1 78057 1u14A 172 1.42e+01 c.51.4.3 107579 2d29A 387 1.44e+01 1xg7A 250 1.47e+01 1r0dA 206 1.50e+01 a.216.1.1 104715 2bl0C 142 1.52e+01 1i36A 264 1.53e+01 a.100.1.8,c.2.1.6 71108,71109 1uliA 460 1.55e+01 b.33.1.2,d.129.3.3 107921,107922 2btdA 210 1.57e+01 1zejA 293 1.66e+01 1knqA 175 1.67e+01 c.37.1.17 72786 1orjA 130 1.72e+01 a.24.19.1 93456 2az0A 73 1.72e+01 1m7vA 363 1.73e+01 d.174.1.1 78748 1pyoB 105 1.79e+01 2bikB 313 1.86e+01 2aaoA 166 1.87e+01 1zrn 232 1.90e+01 1qq5A c.108.1.1 43323 1ic2A 81 1.91e+01 h.1.5.1 62247 1xo5A 183 1.92e+01 2cqsA 842 1.97e+01 1wz9A 375 1.98e+01 1j8uA 325 2.05e+01 d.178.1.1 71611 1evsA 187 2.08e+01 1evsA a.26.1.1 16845 1ca1 370 2.10e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1w53A 84 2.11e+01 a.186.1.2 109175 1wy6A 172 2.14e+01 1wm1A 317 2.14e+01 c.69.1.7 109405 1n83A 270 2.15e+01 a.123.1.1 80276 1jb0A 755 2.22e+01 1jb0A f.29.1.1 62820 1x91A 153 2.24e+01 1xtpA 254 2.29e+01 2ghjA 118 2.31e+01 1bx4A 345 2.34e+01 1bx4A c.72.1.1 34935 1sazA 381 2.35e+01 1csn 298 2.37e+01 1csn d.144.1.7 41664 1lq7A 67 2.41e+01 k.9.1.1 74183 2gmyA 153 2.43e+01 1ustA 93 2.43e+01 a.4.5.13 99884 1go3F 107 2.44e+01 a.60.8.2 65407 2gtrA 261 2.51e+01 1xdzA 240 2.53e+01 1za0A 275 2.53e+01 2cw9A 194 2.57e+01 2c2aA 258 2.61e+01 1nigA 152 2.62e+01 a.25.2.1 85740 2gboA 104 2.68e+01 1x3kA 152 2.69e+01 1kkhA 317 2.69e+01 d.14.1.5,d.58.26.3 72645,72646 1i5nA 146 2.72e+01 1i5nA a.24.10.3 61805 1e4iA 447 2.77e+01 1e70M c.1.8.4 59225 2cvzA 289 2.78e+01 1gu9A 177 2.81e+01 a.152.1.1 65540 1pl5A 142 2.83e+01 h.1.23.1 104186 1f0yA 302 2.85e+01 2hdhA a.100.1.3,c.2.1.6 18793,30197 1at3A 247 2.87e+01 1at3A b.57.1.1 27021 2d2yA 145 2.91e+01 1w5tA 412 2.91e+01 1k9uA 78 3.03e+01 a.39.1.10 84348 1af7 274 3.03e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1bc5A 269 3.08e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1l5wA 796 3.11e+01 c.87.1.4 73605 2bl2A 156 3.17e+01 1xo0A 324 3.23e+01 1d2mA 665 3.24e+01 1d2mA c.37.1.19,c.37.1.19 32417,32418 1nznA 126 3.34e+01 a.118.8.1 92382 1g8iA 190 3.36e+01 1rec a.39.1.5 60363 1fnnA 389 3.40e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1ka2A 499 3.44e+01 d.92.1.5 77305 1rss 151 3.45e+01 1rss a.75.1.1 18392 2bo4A 397 3.52e+01 1k3xA 262 3.60e+01 a.156.1.2,b.113.1.1,g.39.1.8 77242,77243,77244 2sqcA 631 3.64e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 1m9xC 146 3.66e+01 a.73.1.1 84907 2bk9A 153 3.77e+01 1l3pA 102 3.81e+01 a.24.17.1 84520 1w0dA 337 3.81e+01 1t1dA 100 3.81e+01 1t1dA d.42.1.2 38637 2d3dA 88 3.90e+01 2d8dA 90 3.94e+01 1k3yA 221 3.95e+01 a.45.1.1,c.47.1.5 77245,77246 2abk 211 4.03e+01 2abk a.96.1.1 18743 1di1A 300 4.08e+01 1di1A a.128.1.4 19446 1knyA 253 4.09e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 2f57A 317 4.11e+01 1orsC 132 4.13e+01 f.14.1.1 87353 1uhnA 189 4.27e+01 a.39.1.5 99399 2h1rA 299 4.28e+01 1wdcC 156 4.37e+01 1wdcC a.39.1.5 17317 2g7sA 194 4.42e+01 1i4jA 110 4.43e+01 d.55.1.1 76734 1g6uA 48 4.48e+01 1g6uA k.9.1.1 46425 1q5nA 454 4.54e+01 a.127.1.1 95901 1zwwA 256 4.54e+01 1joyA 67 4.56e+01 1joyA a.30.2.1 16991 1rx0A 393 4.60e+01 a.29.3.1,e.6.1.1 98007,98008 2dc3A 193 4.61e+01 1c4oA 664 4.62e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 2bvlA 543 4.71e+01 1xeaA 323 4.73e+01 c.2.1.3,d.81.1.5 109572,109573 3sdhA 146 4.76e+01 3sdhA a.1.1.2 14984 1lw1A 177 4.84e+01 a.152.1.1 74290 1oxjA 173 4.85e+01 a.60.1.2,a.118.1.13 87517,87518 1bco 327 4.87e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1poiA 317 4.92e+01 1poiA c.124.1.2 34153 1w7jB 151 4.98e+01 1yc9A 442 5.01e+01 1ow4A 129 5.02e+01 a.39.2.1 93628 3gcb 470 5.04e+01 3gcb d.3.1.1 37032 1r9kA 172 5.07e+01 a.168.1.1 104869 2pvbA 107 5.10e+01 1a75A a.39.1.4 17205 1w99A 558 5.29e+01 1or4A 178 5.34e+01 a.1.1.2 93447 1zx4A 192 5.40e+01 1wt4A 73 5.45e+01 1o2dA 371 5.50e+01 e.22.1.2 86591 1ykhA 108 5.55e+01 2g0dA 409 5.56e+01 1iomA 377 5.58e+01 a.103.1.1 83698 1io7A 368 5.59e+01 1f4tA a.104.1.1 18971 1jalA 363 5.62e+01 c.37.1.8,d.15.10.2 84138,84139 1ng6A 148 5.63e+01 a.182.1.1 85670 1ehyA 294 5.64e+01 1ehyA c.69.1.11 34693 1g8eA 116 5.70e+01 1g8eA a.145.1.1 60346 1rq6A 62 5.73e+01 1in6A 334 5.74e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 2azjA 289 5.75e+01 1ornA 226 5.76e+01 a.96.1.1 87342 1in4A 334 5.78e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1ra6A 461 5.93e+01 e.8.1.4 104879 1klxA 138 5.97e+01 a.118.18.1 77440 1uvjA 664 6.00e+01 e.8.1.6 100045 1vkfA 188 6.01e+01 c.1.29.1 108656 4cpv 109 6.01e+01 1a75A a.39.1.4 17198 1wxcA 281 6.07e+01 1qusA 322 6.19e+01 1ltm d.2.1.6 36991 1v4xB 146 6.23e+01 a.1.1.2 108364 1aky 221 6.27e+01 1zin c.37.1.1,g.41.2.1 31896,45197 2btzA 394 6.28e+01 1tbfA 347 6.38e+01 a.211.1.2 106743 1wchA 315 6.38e+01 1qtnB 95 6.42e+01 1pauB 1nc5A 373 6.44e+01 a.102.1.6 85548 1i7wB 151 6.62e+01 1i7wB j.71.1.1 61910 1p4kA 295 6.71e+01 d.153.1.5 87772 1lf6A 684 6.72e+01 a.102.1.5,b.30.5.5 77918,77919 2gtqA 867 6.74e+01 2g19A 244 6.75e+01 1i4dA 224 6.80e+01 h.4.7.1 61682 1y97A 238 6.87e+01 1vkuA 100 6.90e+01 a.28.1.1 108690 1zx1A 231 6.91e+01 1ie9A 259 6.92e+01 1db1A a.123.1.1 62318 1cipA 353 6.93e+01 1cipA a.66.1.1,c.37.1.8 18210,32093 1rxqA 178 6.94e+01 a.213.1.1 105118 1oohA 126 7.01e+01 a.39.2.1 93383 1f6fA 199 7.02e+01 1f6fA a.26.1.1 16839 1v0lA 313 7.02e+01 c.1.8.3 108207 1hb6A 86 7.04e+01 a.11.1.1 70959 1a6m 151 7.15e+01 1a6m a.1.1.2 15018 2erbA 125 7.17e+01 2hbtA 247 7.18e+01 1qb2A 109 7.20e+01 1qb2A a.36.1.1 17125 2gfoA 396 7.21e+01 1vimA 200 7.21e+01 c.80.1.3 100758 1u2zA 433 7.28e+01 c.66.1.31 107626 1s4bP 674 7.29e+01 d.92.1.5 105252 1y791 680 7.33e+01 1ib2A 349 7.38e+01 1ib2A a.118.1.8 62141 1rhcA 330 7.43e+01 c.1.16.3 97468 2ak3A 226 7.46e+01 1zin c.37.1.1,g.41.2.1 31892,45193 1usgA 346 7.49e+01 c.93.1.1 99864 1izcA 339 7.51e+01 c.1.12.5 83838 1zy4A 303 7.51e+01 1ayaA 101 7.58e+01 1qadA d.93.1.1 40460 1v54A 514 7.62e+01 f.24.1.1 100321 1wdcB 156 7.64e+01 1wdcB a.39.1.5 17302 1lvaA 258 7.64e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1iy8A 267 7.65e+01 c.2.1.2 83774 1n5uA 585 7.76e+01 a.126.1.1,a.126.1.1,a.126.1.1 85339,85340,85341 1gpjA 404 7.93e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1dbhA 354 8.02e+01 1awe a.87.1.1,b.55.1.1 18514,26967 1a59 378 8.08e+01 1aj8A a.103.1.1 18902 2aq9A 262 8.09e+01 1n1fA 159 8.12e+01 a.26.1.3 79803 1xteA 154 8.14e+01 1fiuA 286 8.16e+01 1fiuA c.52.1.10 33317 1rxdA 159 8.19e+01 1sf8A 126 8.23e+01 d.271.1.1 105472 2au3A 407 8.28e+01 2bt6A 108 8.35e+01 1ugpB 226 8.36e+01 b.34.4.4 107832 2cchB 260 8.42e+01 1vkeA 133 8.44e+01 a.152.1.2 108650 1gvjA 146 8.48e+01 a.4.5.21 90525 2ex4A 241 8.58e+01 1owlA 484 8.60e+01 a.99.1.1,c.28.1.1 93647,93648 1kk8B 139 8.66e+01 a.39.1.5 77430 1xmeA 568 8.68e+01 1dj8A 89 8.72e+01 1bg8A a.57.1.1 17919 1kxpD 458 8.85e+01 a.126.1.1,a.126.1.1,a.126.1.1 73160,73161,73162 1v7lA 163 8.91e+01 1musA 477 8.93e+01 c.55.3.4 79494 2f4lA 297 8.97e+01 1sg0A 230 8.97e+01 1rrmA 386 8.99e+01 e.22.1.2 105081 1nrgA 261 8.99e+01 b.45.1.1 80694