# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1na3A 91 1.10e-02 k.38.1.1 85481 1ihgA 370 7.48e-02 2cpl a.118.8.1,b.62.1.1 62380,62381 1elwA 118 1.37e-01 1a17 a.118.8.1 19207 2fbnA 198 5.36e-01 1nz6A 101 2.13e+00 a.2.3.1 86441 1zu1A 127 3.30e+00 1hb6A 86 3.56e+00 a.11.1.1 70959 1fjgT 106 4.30e+00 1fjfT a.7.6.1 16338 1elrA 131 6.97e+00 1a17 a.118.8.1 19209 2cr5A 109 9.33e+00 1pyoB 105 9.65e+00 1i4jA 110 1.20e+01 d.55.1.1 76734 1zejA 293 1.27e+01 2crbA 97 1.36e+01 1e1hA 287 1.38e+01 d.92.1.7 83167 1u20A 212 1.39e+01 1ugpB 226 1.39e+01 b.34.4.4 107832 1wwlA 312 1.49e+01 2b9lA 394 1.68e+01 1vefA 395 1.69e+01 1tz0A 114 1.76e+01 d.58.4.5 107463 1rq6A 62 1.78e+01 1i4dA 224 1.79e+01 h.4.7.1 61682 2aexA 346 1.97e+01 2bt6A 108 1.97e+01 1a32 88 2.03e+01 1a32 a.16.1.2 16384 1twuA 139 2.07e+01 d.32.1.8 107413 1u9cA 224 2.08e+01 2cy5A 140 2.20e+01 1orjA 130 2.31e+01 a.24.19.1 93456 1w8iA 156 2.44e+01 1ylmA 144 2.48e+01 1mw5A 187 2.57e+01 d.259.1.1 91477 1v4xB 146 2.75e+01 a.1.1.2 108364 1kxpD 458 2.76e+01 a.126.1.1,a.126.1.1,a.126.1.1 73160,73161,73162 1xsvA 113 2.79e+01 1zvaA 77 2.86e+01 2axtE 84 2.98e+01 1tygB 87 2.99e+01 d.15.3.2 107455 1cnzA 363 3.15e+01 1cnzA c.77.1.1 35061 2d8dA 90 3.19e+01 2ghjA 118 3.27e+01 1it2A 146 3.40e+01 a.1.1.2 66365 1xvaA 292 3.46e+01 1xvaA c.66.1.5 34183 1jk8B 190 3.49e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 1ei7A 158 3.64e+01 1rmvA a.24.5.1 16584 1pl4A 198 3.66e+01 a.2.11.1,d.44.1.1 94854,94855 1vkeA 133 3.76e+01 a.152.1.2 108650 1v8cA 168 3.94e+01 d.15.3.1,d.129.5.1 100495,100496 2aa1B 146 4.05e+01 2cyjA 118 4.12e+01 1evsA 187 4.20e+01 1evsA a.26.1.1 16845 1nfvA 179 4.26e+01 a.25.1.1 85642 1gd7A 109 4.27e+01 b.40.4.4 60441 1i7wB 151 4.47e+01 1i7wB j.71.1.1 61910 1bh9B 89 4.56e+01 1bh9B a.22.1.3 16485 1fxxA 482 4.62e+01 1fxxA c.55.3.5 33726 2d9gA 53 4.67e+01 1wkuA 254 4.74e+01 1joyA 67 4.75e+01 1joyA a.30.2.1 16991 1ydlA 79 4.78e+01 1c4oA 664 4.83e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1x46A 150 4.85e+01 1g4iA 123 4.99e+01 1poa a.133.1.2 60241 1gouA 116 5.06e+01 d.1.1.2 65429 1jtvA 327 5.13e+01 c.2.1.2 84230 1ub1A 133 5.49e+01 d.10.1.3 99140 2d9iA 96 5.50e+01 1v7lA 163 5.54e+01 2b95A 106 5.55e+01 1fxkB 109 5.85e+01 1fxkA a.2.5.1 15704 1x9pA 523 5.96e+01 1jogA 146 6.03e+01 a.24.16.2 77142 2c4bA 143 6.05e+01 1jf8A 131 6.10e+01 c.44.1.1 66621 1f9zA 135 6.16e+01 1qipA d.32.1.1 38484 2ac3A 316 6.22e+01 1s6bA 119 6.25e+01 a.133.1.2 98592 1a2pA 110 6.30e+01 1b20A d.1.1.2 36140 2fztA 79 6.36e+01 2c5kT 95 6.43e+01 2bykA 140 6.44e+01 1l3pA 102 6.46e+01 a.24.17.1 84520 1s7zA 117 6.56e+01 a.159.3.1 98715 1sawA 225 6.62e+01 1g6uA 48 6.85e+01 1g6uA k.9.1.1 46425 1vbvA 105 6.90e+01 1vrbA 342 7.05e+01 1txlA 215 7.11e+01 b.60.1.4 107429 1yw4A 341 7.41e+01 1lq7A 67 7.43e+01 k.9.1.1 74183 2ezh 75 7.45e+01 2ezh a.4.1.2 16029 2d3dA 88 7.50e+01 2pvbA 107 7.55e+01 1a75A a.39.1.4 17205 1pvaA 110 7.61e+01 1a75A a.39.1.4 17207 1ezjA 115 7.63e+01 1ezjA h.1.14.1 45638 2fhzA 109 7.75e+01 4ubpB 126 7.75e+01 1ubpB b.85.3.1 28345 1dyr 206 7.81e+01 1aoeA c.71.1.1 34916 1j1jA 240 7.82e+01 a.118.16.1 90762 1s6cA 183 7.92e+01 a.39.1.5 98594 1xtpA 254 7.95e+01 1n7eA 97 8.03e+01 b.36.1.1 91691 2a1rA 430 8.11e+01 1xreA 217 8.11e+01 1nlwA 80 8.11e+01 a.38.1.1 80633 1y0kA 209 8.16e+01 2aplA 157 8.23e+01 1jer 138 8.34e+01 2cbp b.6.1.1 23022 1lriA 98 8.36e+01 a.134.1.1 74223 1pbuA 162 8.44e+01 d.58.46.1 88030 3ullA 132 8.46e+01 3ullA b.40.4.3 25282 2h1rA 299 8.58e+01 2g5cA 281 8.59e+01 2bsjA 133 8.60e+01 1nrjA 158 8.72e+01 d.110.4.4 86124 1e6wA 260 8.83e+01 1e6wA c.2.1.2 59326