# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1na3A 91 2.48e-02 k.38.1.1 85481 1elwA 118 3.50e-02 1a17 a.118.8.1 19207 2fbnA 198 4.55e-02 2avpA 70 6.71e-02 1a17 166 1.66e-01 1a17 a.118.8.1 19206 2ff4A 388 4.48e-01 1oshA 232 5.05e-01 a.123.1.1 93496 1hz4A 373 6.69e-01 a.118.8.2 65960 1ihgA 370 7.01e-01 2cpl a.118.8.1,b.62.1.1 62380,62381 1za0A 275 1.06e+00 1wfdA 93 1.79e+00 1txgA 335 2.94e+00 1w36B 1180 2.95e+00 1x0lA 333 3.37e+00 1lfpA 249 4.13e+00 e.39.1.1 73885 1mswD 883 7.02e+00 e.8.1.3 79427 2gtrA 261 7.76e+00 1r9kA 172 7.94e+00 a.168.1.1 104869 1dc1A 323 7.99e+00 1dc1A c.52.1.11 33321 1wm5A 208 7.99e+00 1w79A 489 8.17e+00 2a2oA 258 8.43e+00 2a2mA 258 8.45e+00 1nktA 922 9.45e+00 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 85830,85831,85832,85833 1qqeA 292 1.05e+01 1qqeA a.118.8.1 19210 2d29A 387 1.19e+01 1hh8A 213 1.23e+01 1e96B a.118.8.1 61042 1orjA 130 1.25e+01 a.24.19.1 93456 2cx9A 387 1.28e+01 2bl2A 156 1.30e+01 1zejA 293 1.34e+01 1tujA 123 1.38e+01 2g0dA 409 1.46e+01 1xnfA 275 1.49e+01 1k3yA 221 1.53e+01 a.45.1.1,c.47.1.5 77245,77246 1paqA 189 1.57e+01 a.118.1.14 94413 1x46A 150 1.58e+01 1f6fA 199 1.59e+01 1f6fA a.26.1.1 16839 1xg7A 250 1.64e+01 1upvA 257 1.66e+01 1zvzA 279 1.71e+01 1l3pA 102 1.80e+01 a.24.17.1 84520 1u61A 138 1.83e+01 a.149.1.1 107696 1elrA 131 1.87e+01 1a17 a.118.8.1 19209 1jb0A 755 1.91e+01 1jb0A f.29.1.1 62820 1ws9A 387 1.92e+01 3lynA 136 1.95e+01 1lis a.19.1.1 16413 1u14A 172 2.07e+01 c.51.4.3 107579 1mlwA 301 2.15e+01 d.178.1.1 79289 1ka2A 499 2.23e+01 d.92.1.5 77305 1ek9A 428 2.24e+01 1ek9A f.5.1.1 43809 1khoA 370 2.27e+01 a.124.1.1,b.12.1.3 72489,72490 1ve5A 311 2.37e+01 1f44A 324 2.52e+01 a.60.9.1,d.163.1.1 64982,64983 1rkeA 262 2.61e+01 a.24.9.1,a.24.9.1 97608,97609 1vf1A 229 2.62e+01 1pq9A 253 2.65e+01 a.123.1.1 95004 1ic2A 81 2.65e+01 h.1.5.1 62247 1anf 370 2.67e+01 4mbp c.94.1.1 35776 1vlgA 176 2.80e+01 a.25.1.1 108816 4crxA 322 2.82e+01 4crxA a.60.9.1,d.163.1.1 18095,42155 1qq8A 214 2.87e+01 1qq8A 1rx0A 393 2.91e+01 a.29.3.1,e.6.1.1 98007,98008 1xjzA 233 3.04e+01 1xdzA 240 3.09e+01 2fmpA 335 3.13e+01 1knyA 253 3.14e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1mvwA 840 3.18e+01 i.15.1.1 79523 1fnnA 389 3.24e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1xo0A 324 3.37e+01 1ntyA 311 3.48e+01 a.87.1.1,b.55.1.1 103873,103874 1lw1A 177 3.51e+01 a.152.1.1 74290 1jogA 146 3.73e+01 a.24.16.2 77142 1de4C 640 3.76e+01 1cx8B a.48.2.1,c.8.4.1,c.56.5.5 17779,30760,33848 2cqsA 842 3.76e+01 1x3lA 440 3.80e+01 1lis 136 3.82e+01 1lis a.19.1.1 16406 2lisA 136 3.82e+01 1lis a.19.1.1 16405 1r0dA 206 3.88e+01 a.216.1.1 104715 1n46A 258 3.94e+01 a.123.1.1 85315 1ovlA 271 4.08e+01 a.123.1.1 87455 1i36A 264 4.13e+01 a.100.1.8,c.2.1.6 71108,71109 2d2yA 145 4.27e+01 1z82A 335 4.27e+01 1n45A 233 4.30e+01 a.132.1.1 79981 4mbp 370 4.41e+01 4mbp c.94.1.1 35777 1f52A 468 4.42e+01 1lgr d.15.9.1,d.128.1.1 37839,41169 1gpjA 404 4.43e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2cruA 118 4.43e+01 1laxA 370 4.49e+01 c.94.1.1 84576 1esmA 316 4.54e+01 1esmA c.37.1.6 31953 2cchB 260 4.55e+01 2az2A 73 4.60e+01 2d09A 407 4.63e+01 1ydiA 263 4.67e+01 1tw9A 206 4.70e+01 a.45.1.1,c.47.1.5 107381,107382 1omp 370 4.73e+01 4mbp c.94.1.1 35778 1j8uA 325 4.77e+01 d.178.1.1 71611 1ic8A 194 4.77e+01 a.4.1.1,a.35.1.1 76740,76741 2g7sA 194 4.79e+01 1iqrA 420 4.83e+01 a.99.1.1,c.28.1.1 66275,66276 2d0eA 407 4.94e+01 1lk9A 448 4.94e+01 c.67.1.1 78057 1tv9A 335 4.96e+01 1m7vA 363 5.05e+01 d.174.1.1 78748 1csn 298 5.09e+01 1csn d.144.1.7 41664 1u6zA 513 5.09e+01 4pah 308 5.13e+01 4pah d.178.1.1 42576 1cby 259 5.20e+01 1cby d.103.1.1 40705 1wm1A 317 5.23e+01 c.69.1.7 109405 1at3A 247 5.33e+01 1at3A b.57.1.1 27021 2occE 109 5.34e+01 2occE a.118.11.1 19224 2g7gA 213 5.47e+01 1yarA 233 5.49e+01 2az0A 73 5.50e+01 2etbA 256 5.51e+01 1mtyG 162 5.57e+01 1mtyG a.23.3.1 16498 1nrgA 261 5.71e+01 b.45.1.1 80694 1zx4A 192 5.85e+01 1fjgT 106 5.87e+01 1fjfT a.7.6.1 16338 1i1iP 681 5.90e+01 1i1iP d.92.1.5 40297 1ga3A 113 5.90e+01 1ga3A a.26.1.2 60411 1n83A 270 5.92e+01 a.123.1.1 80276 1eemA 241 5.93e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1cqxA 403 5.93e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1q7lA 198 5.98e+01 c.56.5.4 96044 1avoB 140 6.16e+01 1avoB 1s1fA 406 6.17e+01 1v54E 109 6.26e+01 a.118.11.1 100326 1w5tA 412 6.26e+01 2f3yA 148 6.29e+01 1qmqA 414 6.43e+01 1phd a.104.1.1 18907 1cjwA 166 6.50e+01 1cjwA d.108.1.1 40818 1iy8A 267 6.68e+01 c.2.1.2 83774 1gu9A 177 6.81e+01 a.152.1.1 65540 1qf5A 431 6.92e+01 1adeA c.37.1.10 32212 1t07A 94 6.92e+01 d.279.1.1 106196 1ireB 228 7.06e+01 b.34.4.4 76770 1ugpB 226 7.06e+01 b.34.4.4 107832 1xkpC 143 7.38e+01 1w0dA 337 7.44e+01 2ahrA 259 7.46e+01 1t01A 255 7.55e+01 a.24.9.1,a.24.9.1 106188,106189 1pmi 440 7.61e+01 1pmi b.82.1.3 28114 1qtrA 317 7.71e+01 1qtrA c.69.1.7 34660 1gvnA 90 7.76e+01 a.8.2.1 76353 1ouvA 273 7.77e+01 a.118.18.1 93570 2c5uA 375 7.82e+01 1knqA 175 7.86e+01 c.37.1.17 72786 1re9A 414 7.99e+01 2ghjA 118 7.99e+01 1ngkA 128 8.04e+01 a.1.1.1 85673 1jjyA 636 8.16e+01 1jjyA 3gcb 470 8.17e+01 3gcb d.3.1.1 37032 1su8A 636 8.21e+01 e.26.1.2 98999 2awiA 317 8.23e+01 1t06A 235 8.47e+01 a.118.1.17 106194 1nz6A 101 8.47e+01 a.2.3.1 86441 1ow4A 129 8.49e+01 a.39.2.1 93628 1wp1A 474 8.57e+01 1wlmA 151 8.57e+01 1dz4A 414 8.72e+01 1phd a.104.1.1 18903 2gfoA 396 8.78e+01 1bx4A 345 8.82e+01 1bx4A c.72.1.1 34935 1fc6A 388 8.85e+01 1fc6A b.36.1.3,c.14.1.2 64738,64739 2bp1A 360 8.91e+01 1wchA 315 8.95e+01 1yrcA 414 8.98e+01