# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1na3A 91 3.08e-04 k.38.1.1 85481 1elwA 118 1.50e-03 1a17 a.118.8.1 19207 2avpA 70 2.85e-03 2fbnA 198 1.10e-02 1a17 166 1.32e-02 1a17 a.118.8.1 19206 1ihgA 370 2.23e-02 2cpl a.118.8.1,b.62.1.1 62380,62381 1elrA 131 1.34e-01 1a17 a.118.8.1 19209 1wfdA 93 1.65e-01 1xnfA 275 5.01e-01 1hz4A 373 8.13e-01 a.118.8.2 65960 1fjgT 106 1.47e+00 1fjfT a.7.6.1 16338 1lq7A 67 1.64e+00 k.9.1.1 74183 1za0A 275 1.91e+00 1w79A 489 2.59e+00 1u9cA 224 2.96e+00 1e6eB 128 3.24e+00 1ayfA d.15.4.1 59300 1ug7A 128 3.29e+00 a.24.24.1 107824 1ayfA 105 3.34e+00 1ayfA d.15.4.1 37684 1x91A 153 4.17e+00 1y791 680 4.24e+00 2bt6A 108 4.38e+00 1ylmA 144 5.05e+00 2pvbA 107 5.16e+00 1a75A a.39.1.4 17205 2aexA 346 5.37e+00 2gi3A 476 6.06e+00 2aq9A 262 7.57e+00 1ppjF 110 7.83e+00 f.27.1.1 104262 1lxa 262 7.99e+00 1lxa b.81.1.1 28052 1fxxA 482 8.06e+00 1fxxA c.55.3.5 33726 2crbA 97 8.65e+00 1knqA 175 8.83e+00 c.37.1.17 72786 4cpv 109 8.89e+00 1a75A a.39.1.4 17198 1rss 151 9.87e+00 1rss a.75.1.1 18392 1u20A 212 1.01e+01 2d9iA 96 1.08e+01 1zvaA 77 1.09e+01 1rq6A 62 1.10e+01 1qqeA 292 1.17e+01 1qqeA a.118.8.1 19210 1om2A 95 1.31e+01 1om2A a.23.4.1 16520 1bt3A 345 1.39e+01 1bt3A a.86.1.2 18507 2bpqA 373 1.42e+01 1wp1A 474 1.43e+01 1kkhA 317 1.53e+01 d.14.1.5,d.58.26.3 72645,72646 1joyA 67 1.54e+01 1joyA a.30.2.1 16991 4ubpB 126 1.61e+01 1ubpB b.85.3.1 28345 1nu7D 282 1.76e+01 a.8.6.1,a.8.6.1 92191,92192 1x0lA 333 1.81e+01 1d3vA 323 1.84e+01 1d3vA c.42.1.1 32559 1sxrA 183 1.84e+01 d.118.1.1 106101 1abrA 251 1.88e+01 1mrj d.165.1.1 42196 1ur1A 378 1.92e+01 c.1.8.3 99804 1pyoB 105 1.96e+01 1vkfA 188 2.03e+01 c.1.29.1 108656 1uhkA 191 2.09e+01 1m9xC 146 2.09e+01 a.73.1.1 84907 1nz6A 101 2.23e+01 a.2.3.1 86441 1wt4A 73 2.24e+01 1uvjA 664 2.26e+01 e.8.1.6 100045 1jnuA 104 2.31e+01 d.110.3.6 71762 2gmyA 153 2.35e+01 1zejA 293 2.35e+01 1a78A 134 2.37e+01 1c1lA b.29.1.3 24212 1z2cB 383 2.56e+01 1bx4A 345 2.56e+01 1bx4A c.72.1.1 34935 1qc7A 101 2.68e+01 1qc7A a.118.14.1 18456 1vefA 395 2.80e+01 1o17A 345 2.84e+01 a.46.2.1,c.27.1.1 80765,80766 1xvaA 292 2.87e+01 1xvaA c.66.1.5 34183 1iw7C 1119 2.89e+01 e.29.1.1 71474 1ux5A 411 2.96e+01 a.207.1.1 100144 1ctf 74 2.96e+01 1ctf d.45.1.1 38759 1hhsA 664 3.05e+01 1hi0P e.8.1.6 61045 1w36B 1180 3.10e+01 1ustA 93 3.22e+01 a.4.5.13 99884 1sl8A 191 3.35e+01 1v0jA 399 3.41e+01 2gboA 104 3.50e+01 1a2pA 110 3.73e+01 1b20A d.1.1.2 36140 1sy7A 715 3.76e+01 1ovlA 271 3.85e+01 a.123.1.1 87455 1d2mA 665 3.94e+01 1d2mA c.37.1.19,c.37.1.19 32417,32418 1m65A 245 3.98e+01 c.6.3.1 84847 2sas 185 4.05e+01 2sas a.39.1.5 17258 2g7sA 194 4.05e+01 1w19A 160 4.06e+01 1qb2A 109 4.16e+01 1qb2A a.36.1.1 17125 1jalA 363 4.23e+01 c.37.1.8,d.15.10.2 84138,84139 2c4bA 143 4.38e+01 1t8sA 484 4.39e+01 c.56.2.1 106679 1rm6A 769 4.42e+01 2gyqA 175 4.42e+01 1avsA 90 4.47e+01 1cll a.39.1.5 17226 1sb0A 87 4.47e+01 a.12.1.1 98789 2gsaA 432 4.47e+01 2gsaA c.67.1.4 34446 1twuA 139 4.57e+01 d.32.1.8 107413 1it2A 146 4.57e+01 a.1.1.2 66365 1sawA 225 4.60e+01 1od8A 313 4.60e+01 c.1.8.3 86838 1kqfB 294 4.61e+01 d.58.1.5,f.23.22.1 75900,75901 2b0tA 738 4.62e+01 1poiA 317 4.64e+01 1poiA c.124.1.2 34153 1v0lA 313 4.66e+01 c.1.8.3 108207 1y01A 102 4.76e+01 1z57A 339 4.90e+01 1pieA 419 4.95e+01 d.14.1.5,d.58.26.7 94706,94707 1bc5A 269 4.95e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1zv1A 65 4.97e+01 1twdA 256 5.09e+01 c.1.30.1 107397 2ghjA 118 5.11e+01 1i4jA 110 5.15e+01 d.55.1.1 76734 1af7 274 5.17e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1n1fA 159 5.17e+01 a.26.1.3 79803 1hb6A 86 5.25e+01 a.11.1.1 70959 1e0wA 313 5.25e+01 1taxA c.1.8.3 59150 1z8uA 102 5.40e+01 1go3F 107 5.40e+01 a.60.8.2 65407 2gibA 103 5.41e+01 1xk5A 204 5.51e+01 2br9A 234 5.51e+01 2erbA 125 5.64e+01 1bmtA 246 5.66e+01 1bmtA a.46.1.1,c.23.6.1 17757,31235 1mg2D 155 5.69e+01 a.3.1.1 79062 1wy5A 317 5.70e+01 2cyjA 118 5.71e+01 2fe5A 94 5.83e+01 1ra6A 461 5.91e+01 e.8.1.4 104879 1tbfA 347 6.03e+01 a.211.1.2 106743 1dmhA 311 6.16e+01 1dmhA b.3.6.1 22633 1evsA 187 6.17e+01 1evsA a.26.1.1 16845 1ks9A 291 6.18e+01 a.100.1.7,c.2.1.6 68857,68858 2f4lA 297 6.18e+01 2azqA 311 6.20e+01 1qv1A 195 6.20e+01 a.39.1.5 96347 1hf2A 210 6.22e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1rj1A 151 6.22e+01 a.29.6.1 97526 1nrgA 261 6.24e+01 b.45.1.1 80694 1knyA 253 6.26e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 2ak3A 226 6.28e+01 1zin c.37.1.1,g.41.2.1 31892,45193 1nbaA 264 6.30e+01 1nbaA c.33.1.3 31753 1vd3A 217 6.32e+01 1bco 327 6.36e+01 1bco b.48.1.1,c.55.3.3 26431,33676 1qwlA 505 6.44e+01 e.5.1.1 96483 1ir6A 424 6.55e+01 c.107.1.2 71342 2gviA 204 6.60e+01 1wm5A 208 6.61e+01 1xsvA 113 6.61e+01 1gc0A 398 6.69e+01 c.67.1.3 70168 1hh8A 213 6.74e+01 1e96B a.118.8.1 61042 1a32 88 6.75e+01 1a32 a.16.1.2 16384 2cwyA 94 6.78e+01 1i1iP 681 6.84e+01 1i1iP d.92.1.5 40297 1gd7A 109 6.88e+01 b.40.4.4 60441 1jf2A 195 6.95e+01 1ej3A a.39.1.5 62930 1oi7A 288 6.95e+01 c.2.1.8,c.23.4.1 87049,87050 1r6lA 239 6.98e+01 d.14.1.4,d.101.1.1 97153,97154 1qmqA 414 7.00e+01 1phd a.104.1.1 18907 1ofcX 304 7.05e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1orjA 130 7.08e+01 a.24.19.1 93456 1ouvA 273 7.14e+01 a.118.18.1 93570 2cwcA 303 7.17e+01 1l3pA 102 7.34e+01 a.24.17.1 84520 2bnjA 303 7.43e+01 1ld8A 382 7.43e+01 a.118.6.1 73838 2c2aA 258 7.45e+01 1g1eB 89 7.46e+01 1g1eB a.59.1.1 17931 1lw1A 177 7.55e+01 a.152.1.1 74290 1zrn 232 7.56e+01 1qq5A c.108.1.1 43323 1c4oA 664 7.57e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1q1oA 98 7.59e+01 d.15.2.2 95596 1w53A 84 7.61e+01 a.186.1.2 109175 1v1aA 309 7.67e+01 c.72.1.1 100249 1i6xA 209 7.81e+01 a.4.5.4,b.82.3.2 83673,83674 1el4A 195 7.85e+01 1ej3A a.39.1.5 59453 1tz0A 114 8.12e+01 d.58.4.5 107463 2d2mD 145 8.15e+01 1i1wA 303 8.36e+01 c.1.8.3 76732 2bikB 313 8.39e+01 1gu9A 177 8.42e+01 a.152.1.1 65540 1mvwB 145 8.47e+01 i.15.1.1 79524 1t3tA 1303 8.48e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1ornA 226 8.49e+01 a.96.1.1 87342 1r5yA 386 8.55e+01 c.1.20.1 97134 1xwsA 313 8.56e+01 1rxqA 178 8.56e+01 a.213.1.1 105118 1zu1A 127 8.59e+01 1x3zB 72 8.65e+01 1nlwB 76 8.90e+01 a.38.1.1 80634 1w85A 368 8.92e+01