# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1na3A 91 1.52e-02 k.38.1.1 85481 2avpA 70 3.51e-02 1wfdA 93 4.09e-02 1ihgA 370 4.72e-02 2cpl a.118.8.1,b.62.1.1 62380,62381 1elwA 118 7.78e-02 1a17 a.118.8.1 19207 2fbnA 198 1.73e-01 1a17 166 4.78e-01 1a17 a.118.8.1 19206 1zu1A 127 2.93e+00 1elrA 131 3.15e+00 1a17 a.118.8.1 19209 1nz6A 101 3.33e+00 a.2.3.1 86441 1fjgT 106 4.15e+00 1fjfT a.7.6.1 16338 1pyoB 105 6.53e+00 1zejA 293 7.25e+00 1ayfA 105 8.74e+00 1ayfA d.15.4.1 37684 2bt6A 108 9.59e+00 1xvaA 292 1.07e+01 1xvaA c.66.1.5 34183 1hb6A 86 1.28e+01 a.11.1.1 70959 2b95A 106 1.44e+01 1u9cA 224 1.45e+01 1ylmA 144 1.68e+01 2aexA 346 1.73e+01 2crbA 97 1.96e+01 1rq6A 62 2.00e+01 2ghjA 118 2.02e+01 2cy5A 140 2.12e+01 1e6eB 128 2.24e+01 1ayfA d.15.4.1 59300 1vefA 395 2.36e+01 1y4oA 104 2.54e+01 1hjxA 362 2.58e+01 c.1.8.5,d.26.3.1 83512,83513 1twuA 139 2.86e+01 d.32.1.8 107413 1ireB 228 2.97e+01 b.34.4.4 76770 1ugpB 226 3.02e+01 b.34.4.4 107832 1u20A 212 3.13e+01 1vkeA 133 3.21e+01 a.152.1.2 108650 1gd7A 109 3.29e+01 b.40.4.4 60441 2b9lA 394 3.36e+01 2cr5A 109 3.39e+01 1ei7A 158 3.73e+01 1rmvA a.24.5.1 16584 1tygB 87 3.74e+01 d.15.3.2 107455 1i4dA 224 3.75e+01 h.4.7.1 61682 1wwlA 312 3.79e+01 2gi3A 476 3.83e+01 1fxxA 482 3.88e+01 1fxxA c.55.3.5 33726 1i4jA 110 3.92e+01 d.55.1.1 76734 1cnzA 363 3.95e+01 1cnzA c.77.1.1 35061 1x46A 150 4.55e+01 1y71A 130 4.56e+01 1musA 477 4.63e+01 c.55.3.4 79494 1nrjA 158 4.90e+01 d.110.4.4 86124 1bmtA 246 4.93e+01 1bmtA a.46.1.1,c.23.6.1 17757,31235 1a32 88 5.06e+01 1a32 a.16.1.2 16384 2d8dA 90 5.06e+01 1xtpA 254 5.10e+01 1wkuA 254 5.11e+01 1dhn 121 5.16e+01 1dhn d.96.1.3 40663 1sawA 225 5.22e+01 1cojA 212 5.23e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 2c4bA 143 5.30e+01 1f3iA 481 5.34e+01 1b7eA 1e1hA 287 5.38e+01 d.92.1.7 83167 1gouA 116 5.39e+01 d.1.1.2 65429 1y1xA 191 5.41e+01 2gboA 104 5.61e+01 1tz0A 114 5.68e+01 d.58.4.5 107463 1orjA 130 5.68e+01 a.24.19.1 93456 1miuA 738 5.69e+01 a.170.1.1,a.171.1.1,b.40.4.3,b.40.4.3,b.40.4.3 79153,79154,79155,79156,79157 1f9zA 135 5.72e+01 1qipA d.32.1.1 38484 4ubpB 126 5.73e+01 1ubpB b.85.3.1 28345 2cyjA 118 5.74e+01 1t8sA 484 5.85e+01 c.56.2.1 106679 1v4xB 146 5.87e+01 a.1.1.2 108364 1f0cA 305 5.89e+01 1c8oA e.1.1.1 42676 1w79A 489 5.90e+01 2c2aA 258 5.91e+01 1zpyA 95 6.14e+01 1n7eA 97 6.39e+01 b.36.1.1 91691 2fhzA 109 6.62e+01 1jenB 67 6.81e+01 1jenB d.156.1.1 42029 1evsA 187 6.83e+01 1evsA a.26.1.1 16845 1owqA 361 6.85e+01 c.1.8.5,d.26.3.1 104041,104042 1zvaA 77 6.87e+01 1pl4A 198 6.98e+01 a.2.11.1,d.44.1.1 94854,94855 1a2pA 110 6.99e+01 1b20A d.1.1.2 36140 1hz4A 373 7.11e+01 a.118.8.2 65960 2d9iA 96 7.19e+01 2ac5A 316 7.20e+01 1xreA 217 7.31e+01 1dyr 206 7.43e+01 1aoeA c.71.1.1 34916 1n0nA 199 7.58e+01 a.2.11.1,d.44.1.1 79750,79751 1fa8A 135 7.59e+01 1qipA d.32.1.1 38486 1f08A 148 7.80e+01 1f08A d.89.1.2 59564 2aa1B 146 7.83e+01 1x9pA 523 7.85e+01 1v8cA 168 7.99e+01 d.15.3.1,d.129.5.1 100495,100496 2d3dA 88 8.03e+01 2aq9A 262 8.07e+01 1uptC 170 8.21e+01 c.37.1.8 99769 1l3pA 102 8.32e+01 a.24.17.1 84520 1nlwA 80 8.38e+01 a.38.1.1 80633 1bxeA 113 8.44e+01 1bxeA d.55.1.1 38898 1it2A 146 8.46e+01 a.1.1.2 66365 1r5iD 216 8.49e+01 a.202.1.1 97091 1a78A 134 8.77e+01 1c1lA b.29.1.3 24212 1d7oA 297 8.84e+01 1enp c.2.1.2 29907 3ullA 132 8.84e+01 3ullA b.40.4.3 25282 1hu3A 260 8.92e+01 1hu3A a.118.1.14 19137 2sas 185 8.94e+01 2sas a.39.1.5 17258 1y0kA 209 8.99e+01