# TARGET T0367 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0367.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 38 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.742 0.076 0.104 0.032 0.013 0.018 0.004 0.001 0.008 0.002 0.001 2 D 0.908 0.007 0.028 0.021 0.002 0.020 0.007 0.002 0.004 0.001 0.001 3 E 0.981 0.002 0.002 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 4 L 0.991 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 5 E 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 6 L 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 7 R 0.990 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 I 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 R 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 K 0.991 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 A 0.989 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 E 0.994 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 K 0.991 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 L 0.974 0.001 0.002 0.022 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 V 0.992 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 Q 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 D 0.963 0.001 0.001 0.036 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 A 0.978 0.001 0.002 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 K 0.981 0.001 0.002 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 K 0.982 0.002 0.004 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 E 0.893 0.002 0.006 0.093 0.001 0.002 0.002 0.001 0.001 0.001 0.001 22 F 0.732 0.019 0.039 0.164 0.003 0.013 0.018 0.003 0.008 0.001 0.001 23 E 0.863 0.021 0.023 0.067 0.003 0.007 0.010 0.001 0.002 0.002 0.001 24 M 0.540 0.027 0.047 0.353 0.010 0.004 0.010 0.003 0.005 0.001 0.001 25 G 0.279 0.007 0.063 0.036 0.036 0.004 0.102 0.338 0.002 0.132 0.001 26 L 0.815 0.044 0.050 0.056 0.009 0.016 0.003 0.001 0.004 0.002 0.001 27 Y 0.937 0.019 0.012 0.022 0.002 0.004 0.001 0.001 0.002 0.001 0.001 28 E 0.978 0.004 0.006 0.008 0.001 0.002 0.001 0.001 0.001 0.001 0.001 29 R 0.983 0.003 0.003 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 C 0.992 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 C 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 S 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 33 T 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 34 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 35 Y 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 Y 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 M 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 F 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 H 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 M 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 L 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 L 0.935 0.001 0.001 0.062 0.001 0.001 0.001 0.001 0.001 0.001 0.001 48 G 0.810 0.008 0.019 0.106 0.006 0.003 0.031 0.011 0.003 0.002 0.001 49 Y 0.200 0.011 0.083 0.671 0.006 0.003 0.022 0.001 0.001 0.002 0.001 50 G 0.006 0.001 0.005 0.012 0.004 0.002 0.203 0.752 0.001 0.014 0.001 51 R 0.041 0.330 0.500 0.023 0.018 0.055 0.003 0.001 0.029 0.001 0.001 52 D 0.053 0.134 0.554 0.047 0.020 0.127 0.025 0.003 0.032 0.003 0.002 53 S 0.417 0.104 0.293 0.072 0.053 0.034 0.007 0.005 0.011 0.003 0.001 54 K 0.774 0.023 0.025 0.160 0.007 0.005 0.002 0.001 0.002 0.001 0.001 55 T 0.258 0.206 0.114 0.276 0.104 0.010 0.011 0.004 0.012 0.004 0.001 56 H 0.252 0.185 0.196 0.164 0.047 0.055 0.039 0.013 0.043 0.005 0.001 57 R 0.429 0.174 0.178 0.093 0.050 0.014 0.035 0.009 0.011 0.007 0.001 58 G 0.570 0.029 0.066 0.030 0.113 0.003 0.014 0.070 0.002 0.102 0.001 59 T 0.731 0.135 0.061 0.039 0.018 0.011 0.001 0.001 0.004 0.001 0.001 60 I 0.800 0.105 0.050 0.017 0.004 0.015 0.001 0.001 0.006 0.001 0.001 61 Y 0.874 0.060 0.030 0.017 0.006 0.007 0.001 0.001 0.004 0.001 0.001 62 L 0.834 0.030 0.032 0.054 0.005 0.019 0.011 0.001 0.013 0.001 0.001 63 I 0.769 0.043 0.052 0.109 0.005 0.010 0.004 0.001 0.007 0.001 0.001 64 W 0.853 0.029 0.057 0.024 0.011 0.005 0.010 0.005 0.002 0.004 0.001 65 E 0.930 0.012 0.015 0.030 0.003 0.002 0.003 0.003 0.001 0.001 0.001 66 C 0.911 0.015 0.014 0.052 0.002 0.001 0.001 0.001 0.001 0.001 0.001 67 R 0.941 0.017 0.015 0.012 0.002 0.005 0.004 0.001 0.003 0.001 0.001 68 E 0.932 0.040 0.011 0.011 0.003 0.002 0.001 0.001 0.001 0.001 0.001 69 E 0.901 0.028 0.028 0.028 0.003 0.005 0.003 0.001 0.004 0.001 0.001 70 L 0.421 0.012 0.039 0.517 0.002 0.002 0.003 0.001 0.003 0.001 0.001 71 G 0.022 0.001 0.007 0.008 0.006 0.001 0.197 0.728 0.002 0.027 0.001 72 L 0.144 0.200 0.456 0.132 0.016 0.038 0.003 0.001 0.009 0.001 0.001 73 S 0.086 0.167 0.549 0.077 0.048 0.047 0.006 0.002 0.012 0.005 0.001 74 D 0.089 0.121 0.487 0.044 0.087 0.112 0.007 0.002 0.043 0.006 0.001 75 D 0.874 0.010 0.017 0.083 0.004 0.003 0.004 0.003 0.002 0.001 0.001 76 D 0.613 0.014 0.036 0.311 0.003 0.008 0.005 0.002 0.005 0.001 0.001 77 C 0.554 0.075 0.112 0.211 0.015 0.015 0.007 0.002 0.008 0.001 0.001 78 S 0.430 0.173 0.177 0.088 0.078 0.013 0.012 0.005 0.014 0.009 0.001 79 K 0.458 0.149 0.266 0.061 0.023 0.025 0.005 0.002 0.010 0.001 0.001 80 L 0.462 0.186 0.194 0.086 0.017 0.033 0.006 0.001 0.013 0.001 0.001 81 S 0.559 0.159 0.110 0.096 0.028 0.020 0.008 0.003 0.014 0.002 0.001 82 R 0.366 0.244 0.211 0.020 0.063 0.021 0.016 0.003 0.049 0.005 0.001 83 A 0.771 0.020 0.155 0.026 0.002 0.018 0.001 0.001 0.002 0.001 0.004 84 F 0.820 0.039 0.032 0.072 0.011 0.008 0.009 0.003 0.004 0.001 0.001 85 D 0.724 0.051 0.050 0.091 0.026 0.014 0.026 0.005 0.011 0.002 0.001 86 L 0.786 0.041 0.046 0.099 0.007 0.009 0.004 0.001 0.005 0.001 0.001 87 R 0.709 0.055 0.059 0.121 0.012 0.015 0.018 0.002 0.008 0.001 0.001 88 E 0.660 0.070 0.127 0.094 0.016 0.015 0.010 0.002 0.007 0.001 0.001 89 E 0.375 0.062 0.091 0.380 0.018 0.020 0.023 0.013 0.017 0.002 0.001 90 S 0.085 0.222 0.517 0.028 0.061 0.023 0.022 0.004 0.033 0.006 0.001 91 D 0.304 0.105 0.339 0.105 0.014 0.094 0.012 0.003 0.015 0.003 0.007 92 Y 0.263 0.283 0.116 0.214 0.070 0.011 0.018 0.006 0.017 0.003 0.001 93 G 0.256 0.117 0.191 0.061 0.198 0.008 0.024 0.062 0.006 0.076 0.001 94 I 0.192 0.526 0.124 0.074 0.057 0.015 0.002 0.001 0.009 0.001 0.001 95 Y 0.127 0.399 0.148 0.089 0.155 0.031 0.023 0.004 0.020 0.004 0.001 96 K 0.103 0.550 0.174 0.048 0.076 0.019 0.009 0.002 0.018 0.001 0.001 97 E 0.058 0.465 0.370 0.007 0.032 0.042 0.005 0.001 0.020 0.001 0.001 98 V 0.384 0.205 0.246 0.117 0.012 0.026 0.001 0.001 0.007 0.001 0.001 99 S 0.014 0.359 0.338 0.004 0.199 0.031 0.002 0.001 0.049 0.005 0.001 100 K 0.992 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 101 D 0.991 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 102 L 0.982 0.001 0.001 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 103 A 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 104 I 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 105 K 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 106 I 0.958 0.001 0.001 0.041 0.001 0.001 0.001 0.001 0.001 0.001 0.001 107 L 0.967 0.001 0.003 0.028 0.001 0.001 0.001 0.001 0.001 0.001 0.001 108 K 0.990 0.001 0.004 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 109 D 0.932 0.001 0.001 0.065 0.001 0.001 0.001 0.001 0.001 0.001 0.001 110 A 0.995 0.001 0.002 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 111 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 112 I 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 113 F 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 114 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 115 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 116 K 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 117 A 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 118 K 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 119 N 0.994 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 120 A 0.976 0.001 0.001 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 121 V 0.936 0.003 0.006 0.050 0.001 0.002 0.001 0.001 0.001 0.001 0.001 122 N 0.837 0.007 0.017 0.114 0.002 0.006 0.013 0.001 0.002 0.001 0.001 123 K 0.630 0.018 0.046 0.272 0.009 0.004 0.012 0.005 0.003 0.001 0.001 124 N 0.171 0.020 0.057 0.448 0.009 0.039 0.195 0.028 0.030 0.002 0.001 125 R 0.172 0.160 0.318 0.092 0.041 0.045 0.086 0.031 0.037 0.016 0.001