# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wolA 122 3.16e-18 1ufbA 127 4.88e-14 a.24.16.3 99331 1o3uA 135 3.57e-12 a.24.16.3 86615 1h1wA 289 1.00e+00 d.144.1.7 83460 1uu3A 310 1.20e+00 d.144.1.7 99999 1wwpA 119 2.49e+00 2ag5A 246 3.58e+00 1ji6A 589 3.71e+00 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 2g0qA 173 4.71e+00 16vpA 366 7.13e+00 16vpA d.180.1.1 42601 1v3wA 173 7.58e+00 b.81.1.5 100291 1a17 166 7.68e+00 1a17 a.118.8.1 19206 3grx 82 7.80e+00 1aba c.47.1.1 32769 1qcrF 103 7.94e+00 1be3F f.27.1.1 43676 1gs5A 258 8.53e+00 c.73.1.2 70395 1hu4A 288 9.42e+00 1hu4A 1n5dA 288 9.42e+00 c.2.1.2 80030 1e2aA 105 9.53e+00 1e2aA a.7.2.1 16322 1khoA 370 1.04e+01 a.124.1.1,b.12.1.3 72489,72490 2e2aA 105 1.23e+01 a.7.2.1 88499 2anxA 146 1.32e+01 1spvA 184 1.43e+01 c.50.1.2 98957 1knzA 164 1.51e+01 e.34.1.1 68709 1wtyA 119 1.60e+01 1na3A 91 1.61e+01 k.38.1.1 85481 3erk 364 1.72e+01 1hcl d.144.1.7 41654 1pme 380 1.72e+01 1hcl d.144.1.7 41653 1ca1 370 1.74e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1pmzA 86 1.78e+01 a.39.1.10 104195 1xrhA 351 1.83e+01 1ouvA 273 1.85e+01 a.118.18.1 93570 2eshA 118 1.93e+01 1qhdA 398 2.05e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1izmA 184 2.07e+01 a.199.1.1 90725 1e7uA 961 2.10e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2frvB 536 2.11e+01 1h2rL e.18.1.1 43291 1tvoA 368 2.12e+01 2evrA 246 2.17e+01 1t46A 313 2.24e+01 d.144.1.7 106397 1ppjF 110 2.29e+01 f.27.1.1 104262 1kamA 194 2.32e+01 c.26.1.3 72254 1avpA 204 2.45e+01 1avpA d.3.1.7 37132 1j30A 144 2.57e+01 a.25.1.1 90806 1gtxA 472 2.58e+01 1gtxA 2avpA 70 2.59e+01 1q0sA 259 2.61e+01 c.66.1.28 95509 1ohvA 472 2.68e+01 c.67.1.4 93031 1bccF 109 2.69e+01 1be3F f.27.1.1 43700 1yyqA 374 2.77e+01 1mldA 314 2.90e+01 2cmd c.2.1.5,d.162.1.1 30122,42089 2cfuA 658 2.90e+01 1e8xA 961 2.92e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19148,23183,37631,41711 1v7nV 163 2.92e+01 a.26.1.2 100476 2ftzA 284 2.94e+01 1o5hA 214 3.04e+01 a.191.1.1 92497 1zybA 232 3.10e+01 1frvB 536 3.19e+01 1h2rL e.18.1.1 43296 1rqjA 299 3.21e+01 a.128.1.1 97744 1adt 356 3.29e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1cpcA 162 3.33e+01 1cpcA a.1.1.3 15643 1e8yA 966 3.37e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1b8dA 164 3.40e+01 1cpcA a.1.1.3 15665 163l 164 3.42e+01 1l92 d.2.1.3 36658 1siqA 392 3.45e+01 a.29.3.1,e.6.1.1 105585,105586 1yf3A 259 3.45e+01 1dlc 584 3.49e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23719,27976,43391 1c3cA 429 3.57e+01 1c3cA a.127.1.1 19425 1i5pA 633 3.63e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 1kiyA 374 3.64e+01 a.128.1.5 72555 1be3F 110 3.67e+01 1be3F f.27.1.1 43668 1x6vA 630 3.82e+01 1w3iA 293 3.88e+01 c.1.10.1 109152 1o04A 500 3.91e+01 c.82.1.1 86508 1x92A 199 4.06e+01 1ag8A 499 4.10e+01 1bpwA c.82.1.1 35341 1k47A 337 4.15e+01 d.14.1.5,d.58.26.4 72040,72041 2b0jA 358 4.17e+01 1jfaA 374 4.19e+01 a.128.1.5 66622 1qbgA 272 4.21e+01 1d4aA c.23.5.3 31227 1swxA 209 4.31e+01 a.224.1.1 106075 1kb9C 385 4.36e+01 f.32.1.1,f.21.1.2 77315,77316 1ezvC 385 4.36e+01 1be3C f.32.1.1,f.21.1.2 75833,75834 1nlnA 204 4.39e+01 d.3.1.7 91962 1tueB 218 4.40e+01 b.91.1.1 107324 2fsrA 195 4.41e+01 1np8A 159 4.43e+01 a.39.1.8 92022 1kyoC 385 4.52e+01 f.32.1.1,f.21.1.2 75904,75905 1kbqA 273 4.57e+01 c.23.5.3 68391 1d4aA 273 4.57e+01 1d4aA c.23.5.3 31219 2crbA 97 4.57e+01 1eg7A 557 4.57e+01 1eg7A c.37.1.10 32241 1elwA 118 4.63e+01 1a17 a.118.8.1 19207 1j57A 143 4.68e+01 d.221.1.1 77079 2bf9A 36 4.72e+01 1u5dA 108 4.77e+01 113l 164 4.83e+01 1l92 d.2.1.3 36678 1idrA 136 4.97e+01 1dlyA a.1.1.1 62301 1lqaA 346 5.00e+01 c.1.7.1 84674 2fkzA 155 5.01e+01 1p5sA 203 5.04e+01 a.40.1.1 94147 1ann 318 5.06e+01 1avc a.65.1.1 18151 1a03A 90 5.09e+01 4icb a.39.1.2 17157 2gmyA 153 5.20e+01 2bd0A 244 5.26e+01 1mtyD 512 5.27e+01 1mhyD a.25.1.2 16742 1b8aA 438 5.34e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 103l 167 5.39e+01 1l92 d.2.1.3 36870 1t98A 287 5.46e+01 1t9kA 347 5.56e+01 c.124.1.5 106721 1e9rA 437 5.56e+01 c.37.1.11 64827 1ii6A 368 5.57e+01 1bg2 c.37.1.9 62413 1d7mA 101 5.61e+01 1d7mA h.1.10.1 45628 1mmoD 512 5.67e+01 1mhyD a.25.1.2 16770 1ykhA 108 5.70e+01 1dd5A 185 5.70e+01 1dd5A d.67.3.1 39564 4pfk 319 5.77e+01 3pfk c.89.1.1 35582 159l 164 5.79e+01 1l92 d.2.1.3 36682 1uarA 285 5.79e+01 c.46.1.2,c.46.1.2 107762,107763 1tzvA 142 5.82e+01 a.79.1.1 107526 1liaA 164 5.83e+01 1cpcA a.1.1.3 15661 3pfk 319 5.84e+01 3pfk c.89.1.1 35581 1wp1A 474 5.93e+01 1jfgA 374 6.02e+01 a.128.1.5 66636 1wmaA 276 6.08e+01 1ppt 36 6.08e+01 1ppt j.6.1.1 46089 1wbeA 209 6.16e+01 1ireB 228 6.19e+01 b.34.4.4 76770 1ugpB 226 6.19e+01 b.34.4.4 107832 1hzdA 272 6.23e+01 c.14.1.3 65969 1d7kA 421 6.25e+01 7odcA b.49.2.3,c.1.6.1 26486,28648 1xorA 349 6.26e+01 1anv 356 6.33e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17890,45365,45371 1qwiA 143 6.37e+01 d.227.1.1 96474 1zdrA 164 6.37e+01 1tfjA 219 6.54e+01 1ah7 245 6.54e+01 1ah7 a.124.1.1 19339 2c31A 568 6.88e+01 2cveA 191 7.03e+01 1va4A 279 7.03e+01 c.69.1.12 108458 1jcdA 52 7.03e+01 h.1.16.1 84157 1ub3A 220 7.22e+01 c.1.10.1 88395 1itkA 731 7.22e+01 a.93.1.3,a.93.1.3 71417,71418 1sflA 238 7.31e+01 1mwwA 128 7.36e+01 d.80.1.4 91483 1ymiA 334 7.38e+01 1a8h 500 7.39e+01 1a8h a.27.1.1,c.26.1.1 16922,31589 2coiA 386 7.43e+01 1mho 88 7.45e+01 1b4cA a.39.1.2 17171 1b7bA 310 7.47e+01 1b7bA c.73.1.1 34963 1sjiA 350 7.48e+01 1h97A 147 7.63e+01 1h97A a.1.1.2 60812 1p2xA 159 7.65e+01 a.40.1.1 104062 1c7nA 399 7.68e+01 1d2fA c.67.1.3 34413 1zvzA 279 7.69e+01 1ymqA 261 7.75e+01 2a74C 343 7.78e+01 1cnpA 90 7.85e+01 4icb a.39.1.2 17161 1is1A 185 7.90e+01 d.67.3.1 83704 1vybA 238 8.01e+01 d.151.1.1 108897 2thiA 379 8.03e+01 2thiA c.94.1.1 35794 2fq4A 192 8.03e+01 1zq4A 693 8.04e+01 1sfjA 238 8.05e+01 1aow 309 8.17e+01 1avc a.65.1.1 18152 1f1eA 154 8.21e+01 a.22.1.2 64927 1hh7A 114 8.23e+01 1ycc a.3.1.1 15896 1i8oA 114 8.23e+01 1ycc a.3.1.1 61979 170l 164 8.23e+01 1l92 d.2.1.3 36968 1mopA 300 8.26e+01 c.26.1.4 85035 1n2eA 300 8.26e+01 c.26.1.4 85268 1a6r 471 8.31e+01 3gcb d.3.1.1 37033 3gcb 470 8.31e+01 3gcb d.3.1.1 37032 1qxoA 388 8.32e+01 d.258.1.1 96539 1yn9A 169 8.35e+01 1lox 662 8.52e+01 1lox a.119.1.2,b.12.1.1 19238,23638 1gcb 454 8.57e+01 3gcb d.3.1.1 37034 1pprM 312 8.62e+01 1pprM a.131.1.1,a.131.1.1 19502,19503 1iujA 106 8.66e+01 d.58.4.5 90701 1vydA 116 8.73e+01 a.3.1.1 108900 2a84A 300 8.77e+01 1p5zB 263 8.77e+01 c.37.1.1 87815 1n97A 389 8.81e+01 a.104.1.1 80335 1wkbA 810 8.84e+01 1lpuA 332 8.84e+01 d.144.1.7 74177 1uwkA 557 8.85e+01 e.51.1.1 108065 1hhsA 664 8.98e+01 1hi0P e.8.1.6 61045 1dw9A 156 8.98e+01 1dw9A a.35.1.4,d.72.1.1 17065,39596