# TARGET T0367 # Using neural net dunbrack-40pc-3157-t06-IDGaaH13-3-13-7-13-9-13-11-pb-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 16 (1 pb ) # The input amino acid frequencies were determined from # alignment /projects/compbio/experiments/protein-predict/casp7/T0367/T0367.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 66 # Pos AA A B C D E F G H I J K L M N O P 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.106 0.040 0.110 0.098 0.004 0.158 0.007 0.008 0.010 0.022 0.128 0.077 0.209 0.001 0.003 0.018 2 D 0.018 0.038 0.020 0.027 0.001 0.241 0.001 0.003 0.001 0.003 0.124 0.357 0.162 0.001 0.001 0.002 3 E 0.002 0.009 0.008 0.018 0.001 0.030 0.001 0.002 0.001 0.001 0.456 0.163 0.307 0.001 0.001 0.002 4 L 0.001 0.002 0.003 0.003 0.001 0.010 0.001 0.001 0.001 0.001 0.039 0.288 0.654 0.001 0.001 0.001 5 E 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.007 0.028 0.958 0.001 0.001 0.001 6 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.010 0.985 0.001 0.001 0.001 7 R 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.005 0.992 0.001 0.001 0.001 8 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.003 0.992 0.001 0.001 0.001 9 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.993 0.001 0.001 0.001 10 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.002 11 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 12 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.002 0.995 0.001 0.001 0.001 13 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.992 0.001 0.002 0.001 14 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.990 0.002 0.001 0.005 15 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 16 Q 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.005 0.989 0.001 0.001 0.001 17 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.978 0.006 0.002 0.009 18 A 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.001 0.988 0.001 0.002 0.001 19 K 0.001 0.001 0.002 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.003 0.005 0.977 0.006 0.001 0.003 20 K 0.001 0.001 0.002 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.003 0.008 0.955 0.009 0.011 0.005 21 E 0.001 0.003 0.009 0.001 0.001 0.001 0.011 0.001 0.001 0.001 0.003 0.005 0.912 0.007 0.011 0.036 22 F 0.003 0.001 0.015 0.002 0.001 0.004 0.005 0.001 0.001 0.001 0.006 0.007 0.938 0.002 0.006 0.011 23 E 0.003 0.005 0.008 0.001 0.010 0.005 0.057 0.001 0.001 0.001 0.012 0.008 0.272 0.603 0.002 0.014 24 M 0.002 0.006 0.010 0.004 0.001 0.003 0.003 0.030 0.001 0.001 0.009 0.014 0.319 0.002 0.593 0.004 25 G 0.001 0.003 0.018 0.003 0.001 0.010 0.003 0.001 0.017 0.024 0.020 0.018 0.613 0.001 0.002 0.265 26 L 0.158 0.005 0.007 0.005 0.001 0.009 0.001 0.001 0.001 0.001 0.049 0.103 0.659 0.001 0.001 0.003 27 Y 0.001 0.002 0.008 0.002 0.001 0.031 0.001 0.001 0.001 0.001 0.034 0.118 0.802 0.001 0.001 0.001 28 E 0.001 0.001 0.001 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.024 0.041 0.927 0.001 0.001 0.001 29 R 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.004 0.046 0.948 0.001 0.001 0.001 30 C 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.011 0.987 0.001 0.001 0.001 31 C 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.997 0.001 0.001 0.001 32 S 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.996 0.001 0.001 0.001 33 T 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.997 0.001 0.001 0.001 34 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.998 0.001 0.001 0.001 35 Y 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 36 Y 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 37 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 38 M 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 39 F 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 40 H 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 41 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 42 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 43 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 44 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 45 M 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.991 0.002 0.001 0.005 46 L 0.001 0.001 0.002 0.001 0.001 0.001 0.016 0.001 0.001 0.001 0.001 0.001 0.877 0.092 0.003 0.006 47 L 0.001 0.002 0.013 0.003 0.001 0.002 0.012 0.003 0.001 0.001 0.001 0.001 0.805 0.024 0.113 0.019 48 G 0.001 0.001 0.001 0.001 0.010 0.001 0.093 0.001 0.001 0.001 0.001 0.001 0.031 0.819 0.003 0.038 49 Y 0.010 0.006 0.011 0.002 0.001 0.001 0.005 0.046 0.001 0.001 0.002 0.002 0.023 0.001 0.884 0.007 50 G 0.007 0.010 0.038 0.006 0.001 0.008 0.008 0.001 0.093 0.079 0.003 0.005 0.030 0.002 0.002 0.707 51 R 0.883 0.021 0.038 0.029 0.001 0.002 0.002 0.001 0.001 0.001 0.006 0.005 0.007 0.001 0.001 0.003 52 D 0.010 0.036 0.258 0.092 0.006 0.496 0.006 0.004 0.002 0.005 0.007 0.046 0.026 0.001 0.002 0.004 53 S 0.006 0.057 0.036 0.099 0.010 0.221 0.004 0.010 0.003 0.002 0.467 0.021 0.059 0.001 0.002 0.003 54 K 0.007 0.154 0.023 0.108 0.023 0.029 0.012 0.007 0.014 0.003 0.106 0.447 0.048 0.009 0.002 0.007 55 T 0.019 0.045 0.152 0.098 0.013 0.065 0.020 0.027 0.007 0.004 0.024 0.157 0.291 0.004 0.054 0.019 56 H 0.009 0.013 0.089 0.018 0.068 0.095 0.131 0.009 0.010 0.021 0.095 0.029 0.279 0.063 0.005 0.066 57 R 0.044 0.068 0.037 0.043 0.001 0.027 0.003 0.130 0.005 0.003 0.152 0.142 0.250 0.001 0.086 0.007 58 G 0.014 0.013 0.036 0.051 0.001 0.038 0.001 0.002 0.058 0.050 0.091 0.185 0.391 0.001 0.001 0.069 59 T 0.056 0.009 0.022 0.034 0.001 0.020 0.001 0.001 0.001 0.001 0.075 0.119 0.661 0.001 0.001 0.002 60 I 0.001 0.004 0.019 0.027 0.001 0.028 0.001 0.001 0.001 0.001 0.038 0.063 0.818 0.001 0.001 0.001 61 Y 0.001 0.008 0.001 0.032 0.001 0.010 0.001 0.001 0.001 0.001 0.005 0.027 0.916 0.001 0.001 0.001 62 L 0.001 0.003 0.001 0.018 0.001 0.026 0.002 0.001 0.001 0.001 0.002 0.017 0.927 0.002 0.001 0.002 63 I 0.001 0.002 0.005 0.010 0.001 0.007 0.003 0.001 0.001 0.001 0.008 0.006 0.944 0.003 0.008 0.002 64 W 0.001 0.002 0.002 0.004 0.001 0.004 0.001 0.001 0.001 0.001 0.010 0.007 0.956 0.002 0.003 0.007 65 E 0.010 0.006 0.008 0.012 0.001 0.003 0.015 0.001 0.001 0.001 0.010 0.014 0.658 0.191 0.005 0.063 66 C 0.003 0.008 0.061 0.010 0.001 0.010 0.012 0.003 0.001 0.001 0.003 0.013 0.722 0.005 0.136 0.012 67 R 0.002 0.009 0.050 0.013 0.001 0.014 0.017 0.001 0.001 0.001 0.015 0.006 0.763 0.006 0.004 0.097 68 E 0.056 0.019 0.023 0.055 0.003 0.021 0.007 0.003 0.001 0.001 0.049 0.058 0.686 0.004 0.005 0.010 69 E 0.001 0.004 0.007 0.003 0.028 0.004 0.057 0.001 0.001 0.001 0.003 0.003 0.023 0.857 0.001 0.006 70 L 0.001 0.009 0.024 0.014 0.001 0.002 0.007 0.045 0.001 0.001 0.002 0.003 0.028 0.001 0.862 0.002 71 G 0.003 0.010 0.041 0.023 0.001 0.018 0.009 0.002 0.081 0.123 0.007 0.007 0.067 0.002 0.002 0.604 72 L 0.853 0.015 0.023 0.039 0.001 0.007 0.003 0.002 0.001 0.001 0.015 0.011 0.022 0.001 0.001 0.005 73 S 0.010 0.052 0.198 0.055 0.005 0.393 0.005 0.011 0.002 0.007 0.039 0.105 0.099 0.003 0.008 0.006 74 D 0.004 0.022 0.017 0.028 0.004 0.231 0.004 0.006 0.002 0.004 0.426 0.060 0.186 0.002 0.003 0.003 75 D 0.004 0.043 0.006 0.024 0.001 0.024 0.001 0.006 0.003 0.001 0.271 0.427 0.183 0.001 0.002 0.003 76 D 0.003 0.016 0.018 0.013 0.001 0.020 0.003 0.001 0.002 0.001 0.022 0.325 0.560 0.003 0.004 0.010 77 C 0.002 0.001 0.023 0.005 0.001 0.015 0.007 0.001 0.001 0.001 0.019 0.023 0.894 0.002 0.003 0.004 78 S 0.001 0.008 0.007 0.006 0.001 0.008 0.002 0.001 0.001 0.001 0.025 0.035 0.903 0.001 0.002 0.003 79 K 0.003 0.007 0.006 0.019 0.001 0.012 0.004 0.001 0.002 0.001 0.012 0.042 0.851 0.013 0.001 0.028 80 L 0.001 0.003 0.026 0.007 0.001 0.008 0.010 0.001 0.001 0.001 0.007 0.013 0.909 0.003 0.008 0.003 81 S 0.001 0.007 0.016 0.008 0.001 0.012 0.005 0.001 0.001 0.001 0.009 0.014 0.908 0.003 0.005 0.012 82 R 0.005 0.005 0.007 0.021 0.001 0.011 0.003 0.001 0.001 0.001 0.042 0.016 0.854 0.009 0.005 0.019 83 A 0.006 0.021 0.052 0.017 0.002 0.008 0.027 0.001 0.001 0.001 0.012 0.039 0.748 0.029 0.012 0.026 84 F 0.004 0.011 0.073 0.033 0.002 0.023 0.032 0.004 0.001 0.001 0.009 0.017 0.717 0.014 0.037 0.024 85 D 0.009 0.027 0.057 0.041 0.004 0.064 0.024 0.008 0.004 0.003 0.036 0.020 0.597 0.020 0.020 0.065 86 L 0.035 0.068 0.061 0.067 0.003 0.033 0.019 0.008 0.007 0.003 0.113 0.048 0.436 0.017 0.023 0.060 87 R 0.033 0.069 0.238 0.100 0.005 0.027 0.033 0.009 0.005 0.003 0.025 0.087 0.267 0.023 0.021 0.055 88 E 0.015 0.021 0.098 0.051 0.005 0.268 0.019 0.010 0.002 0.003 0.034 0.035 0.391 0.007 0.021 0.019 89 E 0.009 0.071 0.056 0.052 0.008 0.055 0.020 0.011 0.004 0.003 0.311 0.042 0.301 0.017 0.008 0.030 90 S 0.018 0.043 0.032 0.046 0.005 0.060 0.012 0.014 0.006 0.003 0.061 0.349 0.311 0.008 0.023 0.010 91 D 0.012 0.029 0.076 0.022 0.023 0.027 0.103 0.008 0.009 0.004 0.064 0.031 0.250 0.240 0.017 0.087 92 Y 0.019 0.052 0.164 0.059 0.002 0.012 0.019 0.040 0.004 0.001 0.021 0.043 0.170 0.005 0.361 0.027 93 G 0.023 0.019 0.146 0.037 0.014 0.063 0.082 0.003 0.033 0.043 0.017 0.020 0.157 0.039 0.006 0.299 94 I 0.279 0.081 0.099 0.102 0.005 0.048 0.031 0.032 0.003 0.002 0.089 0.040 0.126 0.009 0.039 0.015 95 Y 0.012 0.216 0.267 0.159 0.003 0.045 0.015 0.005 0.037 0.008 0.014 0.058 0.054 0.006 0.013 0.087 96 K 0.148 0.041 0.266 0.351 0.003 0.025 0.020 0.004 0.004 0.003 0.023 0.023 0.049 0.002 0.008 0.031 97 E 0.041 0.055 0.400 0.233 0.006 0.162 0.007 0.002 0.004 0.002 0.014 0.014 0.034 0.001 0.002 0.021 98 V 0.016 0.187 0.141 0.554 0.002 0.018 0.002 0.005 0.001 0.002 0.032 0.014 0.017 0.001 0.001 0.005 99 S 0.001 0.001 0.001 0.002 0.001 0.973 0.001 0.001 0.001 0.001 0.001 0.012 0.008 0.001 0.001 0.001 100 K 0.001 0.001 0.001 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.985 0.001 0.010 0.001 0.001 0.001 101 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.991 0.006 0.001 0.001 0.001 102 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.007 0.989 0.001 0.001 0.001 103 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.003 0.004 0.992 0.001 0.001 0.001 104 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.008 0.991 0.001 0.001 0.001 105 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 106 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 107 L 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 108 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 109 D 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.004 110 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 111 E 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.006 0.993 0.001 0.001 0.001 112 I 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.002 0.998 0.001 0.001 0.001 113 F 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 114 V 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 115 Q 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 116 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.004 117 A 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 118 K 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 119 N 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.003 120 A 0.001 0.001 0.006 0.001 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.821 0.104 0.005 0.051 121 V 0.001 0.003 0.030 0.003 0.001 0.001 0.030 0.001 0.001 0.001 0.001 0.004 0.836 0.021 0.054 0.015 122 N 0.002 0.004 0.044 0.005 0.005 0.008 0.090 0.002 0.001 0.001 0.002 0.002 0.536 0.117 0.018 0.162 123 K 0.047 0.060 0.106 0.037 0.005 0.008 0.055 0.024 0.004 0.002 0.034 0.007 0.304 0.063 0.129 0.113 124 N 0.019 0.030 0.133 0.019 0.038 0.120 0.189 0.008 0.010 0.016 0.026 0.050 0.201 0.051 0.034 0.058 125 R 0.062 0.134 0.076 0.037 0.017 0.034 0.047 0.070 0.006 0.004 0.231 0.038 0.117 0.033 0.060 0.033