# TARGET T0367 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0367.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 66 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.001 0.001 0.002 0.001 0.001 0.996 2 D 0.028 0.010 0.003 0.513 0.011 0.013 0.422 3 E 0.015 0.004 0.003 0.912 0.016 0.012 0.037 4 L 0.007 0.001 0.002 0.957 0.003 0.007 0.023 5 E 0.006 0.001 0.001 0.971 0.004 0.003 0.014 6 L 0.014 0.001 0.003 0.952 0.010 0.004 0.017 7 R 0.006 0.001 0.003 0.963 0.005 0.008 0.014 8 I 0.001 0.001 0.001 0.989 0.001 0.004 0.004 9 R 0.001 0.001 0.001 0.993 0.001 0.004 0.001 10 K 0.001 0.001 0.001 0.991 0.001 0.006 0.001 11 A 0.001 0.001 0.001 0.990 0.001 0.007 0.001 12 E 0.001 0.001 0.001 0.993 0.001 0.005 0.001 13 K 0.001 0.001 0.001 0.983 0.001 0.015 0.001 14 L 0.001 0.001 0.002 0.968 0.001 0.024 0.004 15 V 0.001 0.001 0.002 0.983 0.002 0.008 0.005 16 Q 0.001 0.001 0.002 0.984 0.001 0.012 0.001 17 D 0.001 0.001 0.003 0.971 0.001 0.024 0.001 18 A 0.001 0.001 0.003 0.963 0.001 0.029 0.004 19 K 0.001 0.001 0.002 0.979 0.001 0.014 0.004 20 K 0.001 0.001 0.004 0.963 0.002 0.026 0.005 21 E 0.001 0.001 0.005 0.964 0.003 0.023 0.005 22 F 0.001 0.001 0.008 0.945 0.010 0.025 0.012 23 E 0.001 0.001 0.009 0.900 0.009 0.065 0.015 24 M 0.001 0.001 0.008 0.723 0.009 0.255 0.004 25 G 0.001 0.001 0.006 0.552 0.048 0.350 0.043 26 L 0.002 0.006 0.011 0.704 0.054 0.071 0.152 27 Y 0.001 0.002 0.008 0.921 0.014 0.014 0.040 28 E 0.001 0.001 0.009 0.965 0.007 0.010 0.008 29 R 0.001 0.001 0.007 0.977 0.003 0.009 0.004 30 C 0.001 0.001 0.005 0.977 0.002 0.010 0.005 31 C 0.001 0.001 0.003 0.979 0.003 0.011 0.004 32 S 0.001 0.001 0.002 0.977 0.004 0.014 0.003 33 T 0.001 0.001 0.001 0.984 0.001 0.012 0.002 34 A 0.001 0.001 0.001 0.992 0.001 0.005 0.002 35 Y 0.001 0.001 0.001 0.996 0.001 0.002 0.001 36 Y 0.001 0.001 0.001 0.997 0.001 0.002 0.001 37 A 0.001 0.001 0.001 0.996 0.001 0.004 0.001 38 M 0.001 0.001 0.001 0.996 0.001 0.003 0.001 39 F 0.001 0.001 0.001 0.996 0.001 0.003 0.001 40 H 0.001 0.001 0.001 0.996 0.001 0.004 0.001 41 A 0.001 0.001 0.001 0.993 0.001 0.006 0.001 42 A 0.001 0.001 0.001 0.995 0.001 0.004 0.001 43 K 0.001 0.001 0.001 0.997 0.001 0.002 0.001 44 A 0.001 0.001 0.001 0.997 0.001 0.002 0.001 45 M 0.001 0.001 0.001 0.998 0.001 0.002 0.001 46 L 0.001 0.001 0.001 0.995 0.001 0.004 0.001 47 L 0.001 0.001 0.001 0.984 0.001 0.014 0.001 48 G 0.001 0.001 0.003 0.897 0.003 0.092 0.004 49 Y 0.001 0.001 0.006 0.305 0.014 0.660 0.013 50 G 0.002 0.002 0.004 0.019 0.089 0.755 0.129 51 R 0.011 0.017 0.008 0.006 0.215 0.031 0.712 52 D 0.037 0.033 0.017 0.008 0.165 0.025 0.715 53 S 0.023 0.011 0.219 0.072 0.124 0.314 0.236 54 K 0.019 0.010 0.234 0.097 0.085 0.384 0.172 55 T 0.024 0.022 0.188 0.139 0.135 0.255 0.237 56 H 0.019 0.011 0.028 0.163 0.214 0.058 0.507 57 R 0.005 0.002 0.031 0.631 0.053 0.236 0.040 58 G 0.010 0.005 0.020 0.765 0.032 0.143 0.025 59 T 0.008 0.003 0.008 0.945 0.004 0.012 0.019 60 I 0.010 0.002 0.006 0.960 0.004 0.007 0.012 61 Y 0.006 0.001 0.007 0.969 0.002 0.010 0.004 62 L 0.005 0.001 0.015 0.950 0.002 0.021 0.005 63 I 0.006 0.001 0.013 0.952 0.002 0.017 0.009 64 W 0.005 0.001 0.015 0.940 0.004 0.031 0.006 65 E 0.005 0.001 0.013 0.926 0.005 0.043 0.008 66 C 0.006 0.001 0.009 0.923 0.004 0.040 0.016 67 R 0.008 0.003 0.016 0.910 0.011 0.029 0.023 68 E 0.006 0.001 0.041 0.871 0.012 0.055 0.014 69 E 0.003 0.001 0.037 0.811 0.011 0.126 0.011 70 L 0.004 0.003 0.034 0.457 0.023 0.449 0.030 71 G 0.005 0.004 0.018 0.077 0.070 0.686 0.140 72 L 0.013 0.012 0.033 0.049 0.124 0.120 0.649 73 S 0.031 0.026 0.034 0.061 0.120 0.074 0.653 74 D 0.012 0.007 0.133 0.143 0.127 0.177 0.400 75 D 0.007 0.005 0.269 0.163 0.070 0.312 0.174 76 D 0.010 0.007 0.319 0.278 0.051 0.227 0.109 77 C 0.020 0.011 0.256 0.350 0.076 0.099 0.189 78 S 0.015 0.006 0.183 0.451 0.049 0.178 0.118 79 K 0.018 0.007 0.175 0.553 0.040 0.154 0.052 80 L 0.045 0.012 0.072 0.519 0.111 0.045 0.197 81 S 0.018 0.002 0.172 0.619 0.018 0.087 0.085 82 R 0.024 0.004 0.152 0.602 0.026 0.150 0.042 83 A 0.030 0.008 0.175 0.548 0.022 0.146 0.071 84 F 0.054 0.010 0.094 0.555 0.072 0.082 0.133 85 D 0.051 0.005 0.076 0.520 0.052 0.136 0.160 86 L 0.029 0.007 0.056 0.525 0.054 0.188 0.141 87 R 0.030 0.020 0.036 0.434 0.084 0.154 0.242 88 E 0.041 0.021 0.033 0.285 0.137 0.126 0.357 89 E 0.025 0.007 0.088 0.262 0.108 0.160 0.351 90 S 0.017 0.007 0.094 0.204 0.151 0.242 0.286 91 D 0.020 0.015 0.095 0.165 0.135 0.331 0.240 92 Y 0.032 0.022 0.087 0.122 0.207 0.262 0.268 93 G 0.039 0.013 0.058 0.058 0.180 0.287 0.365 94 I 0.060 0.031 0.050 0.040 0.195 0.164 0.460 95 Y 0.071 0.029 0.039 0.025 0.162 0.072 0.602 96 K 0.110 0.018 0.024 0.021 0.156 0.059 0.612 97 E 0.060 0.017 0.006 0.009 0.034 0.022 0.852 98 V 0.059 0.061 0.002 0.008 0.065 0.006 0.799 99 S 0.010 0.013 0.001 0.012 0.030 0.002 0.932 100 K 0.001 0.001 0.004 0.987 0.001 0.006 0.001 101 D 0.001 0.001 0.003 0.992 0.001 0.004 0.001 102 L 0.001 0.001 0.004 0.992 0.001 0.002 0.001 103 A 0.001 0.001 0.001 0.999 0.001 0.001 0.001 104 I 0.001 0.001 0.001 0.999 0.001 0.001 0.001 105 K 0.001 0.001 0.001 0.996 0.001 0.004 0.001 106 I 0.001 0.001 0.001 0.994 0.001 0.005 0.001 107 L 0.001 0.001 0.001 0.996 0.001 0.002 0.001 108 K 0.001 0.001 0.001 0.992 0.001 0.007 0.001 109 D 0.001 0.001 0.001 0.985 0.001 0.014 0.001 110 A 0.001 0.001 0.001 0.995 0.001 0.003 0.001 111 E 0.001 0.001 0.001 0.998 0.001 0.001 0.001 112 I 0.001 0.001 0.001 0.998 0.001 0.002 0.001 113 F 0.001 0.001 0.001 0.997 0.001 0.002 0.001 114 V 0.001 0.001 0.001 0.999 0.001 0.001 0.001 115 Q 0.001 0.001 0.001 0.998 0.001 0.002 0.001 116 K 0.001 0.001 0.001 0.997 0.001 0.003 0.001 117 A 0.001 0.001 0.001 0.996 0.001 0.003 0.001 118 K 0.001 0.001 0.001 0.995 0.001 0.004 0.001 119 N 0.001 0.001 0.001 0.979 0.001 0.019 0.001 120 A 0.001 0.001 0.002 0.942 0.001 0.048 0.006 121 V 0.001 0.002 0.007 0.881 0.014 0.066 0.030 122 N 0.003 0.003 0.025 0.609 0.061 0.190 0.110 123 K 0.003 0.002 0.023 0.408 0.111 0.321 0.131 124 N 0.003 0.003 0.013 0.112 0.048 0.157 0.664 125 R 0.001 0.001 0.001 0.003 0.007 0.002 0.987