# TARGET T0367 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0367.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 66 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.298 0.198 0.322 0.037 0.065 0.013 0.016 0.011 0.010 0.030 0.001 2 D 0.516 0.042 0.267 0.030 0.011 0.086 0.024 0.005 0.012 0.005 0.002 3 E 0.966 0.005 0.007 0.016 0.001 0.002 0.001 0.001 0.001 0.001 0.001 4 L 0.991 0.002 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 5 E 0.995 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 6 L 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 7 R 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 I 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 R 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 K 0.991 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 A 0.989 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 E 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 K 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 L 0.968 0.001 0.001 0.028 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 V 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 Q 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 D 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 A 0.987 0.001 0.001 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 K 0.992 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 K 0.992 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 E 0.924 0.001 0.001 0.071 0.001 0.001 0.001 0.001 0.001 0.001 0.001 22 F 0.748 0.009 0.017 0.186 0.002 0.008 0.019 0.007 0.004 0.001 0.001 23 E 0.837 0.016 0.026 0.083 0.003 0.012 0.016 0.001 0.003 0.003 0.001 24 M 0.502 0.034 0.066 0.357 0.012 0.007 0.010 0.005 0.005 0.002 0.001 25 G 0.264 0.010 0.071 0.035 0.035 0.006 0.181 0.276 0.002 0.119 0.001 26 L 0.862 0.025 0.034 0.042 0.006 0.019 0.004 0.001 0.005 0.002 0.001 27 Y 0.967 0.007 0.006 0.013 0.001 0.003 0.001 0.001 0.001 0.001 0.001 28 E 0.988 0.002 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 R 0.992 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 30 C 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 31 C 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 32 S 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 33 T 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 34 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 35 Y 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 Y 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 M 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 F 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 H 0.993 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 A 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 A 0.990 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 K 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 A 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 M 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 L 0.989 0.001 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 L 0.934 0.003 0.004 0.056 0.001 0.001 0.001 0.001 0.001 0.001 0.001 48 G 0.842 0.007 0.014 0.080 0.004 0.003 0.028 0.015 0.002 0.004 0.001 49 Y 0.217 0.007 0.028 0.725 0.002 0.003 0.012 0.001 0.003 0.001 0.001 50 G 0.012 0.001 0.010 0.010 0.010 0.003 0.169 0.731 0.002 0.052 0.001 51 R 0.153 0.235 0.450 0.065 0.024 0.048 0.004 0.001 0.017 0.002 0.001 52 D 0.087 0.112 0.526 0.050 0.019 0.132 0.020 0.003 0.046 0.004 0.001 53 S 0.521 0.066 0.214 0.107 0.035 0.029 0.008 0.006 0.010 0.004 0.001 54 K 0.771 0.030 0.054 0.117 0.008 0.008 0.004 0.003 0.005 0.001 0.001 55 T 0.393 0.064 0.127 0.319 0.031 0.016 0.017 0.008 0.012 0.012 0.001 56 H 0.242 0.085 0.241 0.178 0.031 0.080 0.065 0.015 0.054 0.008 0.001 57 R 0.594 0.047 0.166 0.107 0.017 0.009 0.032 0.013 0.004 0.011 0.001 58 G 0.729 0.005 0.025 0.017 0.016 0.002 0.014 0.127 0.001 0.063 0.001 59 T 0.952 0.006 0.012 0.021 0.001 0.005 0.001 0.001 0.002 0.001 0.001 60 I 0.981 0.004 0.006 0.006 0.001 0.002 0.001 0.001 0.001 0.001 0.001 61 Y 0.985 0.003 0.003 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 L 0.955 0.003 0.004 0.031 0.001 0.003 0.001 0.001 0.002 0.001 0.001 63 I 0.901 0.012 0.014 0.062 0.001 0.004 0.002 0.001 0.003 0.001 0.001 64 W 0.936 0.011 0.018 0.018 0.005 0.002 0.005 0.002 0.001 0.002 0.001 65 E 0.882 0.013 0.017 0.075 0.003 0.004 0.003 0.002 0.001 0.001 0.001 66 C 0.763 0.017 0.027 0.174 0.003 0.007 0.005 0.002 0.003 0.001 0.001 67 R 0.774 0.034 0.046 0.054 0.008 0.023 0.039 0.007 0.011 0.003 0.001 68 E 0.754 0.112 0.069 0.029 0.016 0.009 0.003 0.001 0.005 0.002 0.001 69 E 0.719 0.044 0.133 0.063 0.002 0.022 0.004 0.001 0.011 0.001 0.001 70 L 0.412 0.053 0.081 0.421 0.007 0.008 0.003 0.001 0.013 0.001 0.001 71 G 0.071 0.007 0.031 0.025 0.040 0.009 0.301 0.374 0.007 0.135 0.001 72 L 0.166 0.210 0.415 0.138 0.018 0.035 0.003 0.001 0.013 0.002 0.001 73 S 0.115 0.144 0.572 0.030 0.035 0.051 0.009 0.004 0.025 0.015 0.001 74 D 0.712 0.025 0.119 0.071 0.011 0.024 0.017 0.004 0.008 0.007 0.001 75 D 0.878 0.007 0.020 0.063 0.003 0.005 0.012 0.008 0.002 0.001 0.001 76 D 0.787 0.008 0.022 0.159 0.002 0.012 0.003 0.001 0.006 0.001 0.001 77 C 0.912 0.012 0.028 0.030 0.002 0.007 0.004 0.001 0.003 0.001 0.001 78 S 0.957 0.004 0.006 0.029 0.001 0.001 0.001 0.001 0.001 0.001 0.001 79 K 0.891 0.016 0.015 0.062 0.005 0.005 0.002 0.001 0.004 0.001 0.001 80 L 0.810 0.029 0.063 0.077 0.003 0.009 0.003 0.001 0.005 0.001 0.001 81 S 0.931 0.012 0.017 0.017 0.003 0.007 0.008 0.001 0.003 0.001 0.001 82 R 0.920 0.019 0.014 0.035 0.006 0.003 0.001 0.001 0.001 0.001 0.001 83 A 0.803 0.019 0.030 0.133 0.003 0.006 0.002 0.001 0.004 0.001 0.001 84 F 0.734 0.088 0.070 0.032 0.020 0.012 0.017 0.003 0.019 0.005 0.001 85 D 0.768 0.021 0.077 0.072 0.005 0.023 0.023 0.003 0.006 0.002 0.001 86 L 0.600 0.052 0.064 0.256 0.008 0.011 0.002 0.001 0.005 0.001 0.001 87 R 0.414 0.115 0.135 0.194 0.029 0.030 0.041 0.015 0.022 0.003 0.001 88 E 0.184 0.282 0.305 0.033 0.057 0.053 0.029 0.003 0.049 0.006 0.001 89 E 0.375 0.102 0.358 0.080 0.008 0.050 0.006 0.002 0.015 0.001 0.002 90 S 0.309 0.144 0.242 0.098 0.102 0.029 0.024 0.014 0.020 0.017 0.001 91 D 0.399 0.116 0.102 0.219 0.020 0.076 0.027 0.004 0.034 0.001 0.002 92 Y 0.238 0.119 0.147 0.348 0.046 0.020 0.036 0.005 0.037 0.004 0.001 93 G 0.153 0.024 0.187 0.032 0.129 0.007 0.042 0.182 0.004 0.238 0.002 94 I 0.261 0.244 0.209 0.211 0.035 0.019 0.003 0.002 0.012 0.002 0.002 95 Y 0.141 0.127 0.336 0.134 0.053 0.046 0.091 0.026 0.026 0.019 0.001 96 K 0.149 0.361 0.286 0.050 0.067 0.034 0.016 0.007 0.024 0.005 0.001 97 E 0.069 0.276 0.458 0.039 0.030 0.069 0.019 0.006 0.025 0.005 0.005 98 V 0.017 0.535 0.326 0.027 0.048 0.031 0.004 0.001 0.011 0.001 0.001 99 S 0.002 0.235 0.633 0.001 0.066 0.039 0.001 0.001 0.023 0.002 0.001 100 K 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 101 D 0.993 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 102 L 0.974 0.001 0.001 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 103 A 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 104 I 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 105 K 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 106 I 0.991 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 107 L 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 108 K 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 109 D 0.972 0.001 0.001 0.027 0.001 0.001 0.001 0.001 0.001 0.001 0.001 110 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 111 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 112 I 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 113 F 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 114 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 115 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 116 K 0.992 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 117 A 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 118 K 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 119 N 0.989 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 120 A 0.956 0.001 0.001 0.041 0.001 0.001 0.001 0.001 0.001 0.001 0.001 121 V 0.868 0.009 0.011 0.103 0.001 0.003 0.001 0.001 0.003 0.001 0.001 122 N 0.754 0.010 0.034 0.123 0.005 0.014 0.046 0.006 0.003 0.005 0.001 123 K 0.569 0.046 0.089 0.239 0.011 0.014 0.016 0.006 0.007 0.002 0.001 124 N 0.208 0.075 0.144 0.364 0.029 0.053 0.068 0.013 0.042 0.004 0.001 125 R 0.243 0.155 0.254 0.079 0.073 0.031 0.074 0.023 0.038 0.027 0.001