# List of top-scoring protein chains for T0367.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wolA 122 5.32e-19 1o3uA 135 2.03e-18 a.24.16.3 86615 1ufbA 127 8.18e-17 a.24.16.3 99331 2c2lA 281 3.04e+00 1vdrA 162 4.16e+00 1vdrA c.71.1.1 34893 2cqdA 116 6.34e+00 1xrhA 351 7.36e+00 1wehA 171 7.72e+00 1bcfA 158 8.51e+00 1bcfA a.25.1.1 16648 1gs5A 258 8.75e+00 c.73.1.2 70395 1nkwF 146 9.01e+00 i.1.1.2 80591 1adt 356 9.16e+00 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1anv 356 9.29e+00 1anv a.54.1.1,g.51.1.1,g.51.1.1 17890,45365,45371 1kzhA 555 1.07e+01 c.89.1.1 73361 1ejoH 220 1.07e+01 1igtB b.1.1.1,b.1.1.2 20429,21399 1jd0A 263 1.19e+01 2cba b.74.1.1 62888 1l2fA 369 1.34e+01 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 91044,91045,91046,91047 1sauA 115 1.39e+01 1rue1 289 1.41e+01 1pov1 1rug1 289 1.43e+01 1pov1 2rmu1 289 1.43e+01 1aym1 1ncqA 289 1.47e+01 b.121.4.1 91803 1rmu1 289 1.50e+01 1pov1 1rui1 289 1.50e+01 1pov1 1esp 317 1.75e+01 1hyt d.92.1.2 58979 2f42A 179 1.95e+01 1iuhA 198 2.12e+01 d.61.1.2 83711 1rud1 289 2.22e+01 1pov1 1ue8A 367 2.30e+01 a.104.1.1 107781 1ryiA 382 2.38e+01 1mxiA 160 2.62e+01 c.116.1.1 79646 1e3jA 352 2.65e+01 1e3jA b.35.1.2,c.2.1.1 24765,29781 1wdwB 385 2.79e+01 1v8zA 388 2.79e+01 1lf7A 182 2.80e+01 b.60.1.1 73878 1ng4A 390 2.86e+01 c.3.1.2,d.16.1.3 85666,85667 1ojuA 294 2.95e+01 c.2.1.5,d.162.1.1 103990,103991 2coyA 112 3.08e+01 2f95B 163 3.13e+01 1na0A 125 3.17e+01 k.38.1.1 85479 1aun 208 3.25e+01 1thv b.25.1.1 23900 1vqsA 116 3.47e+01 1eh9A 558 3.68e+01 1ehaA b.1.18.2,b.71.1.1,c.1.8.1 21858,27785,28772 1ehaA 558 3.68e+01 1ehaA b.1.18.2,b.71.1.1,c.1.8.1 21859,27786,28773 1wc1A 226 3.70e+01 1xc3A 302 3.89e+01 1kkoA 413 3.98e+01 c.1.11.2,d.54.1.1 68675,68676 1wc3A 219 3.99e+01 2g7rA 117 4.03e+01 1rxwA 336 4.07e+01 a.60.7.1,c.120.1.2 98059,98060 1ij5A 323 4.11e+01 a.39.1.9 76748 1ykkB 238 4.31e+01 1ynfA 458 4.32e+01 1yniA 458 4.33e+01 2cxaA 256 4.38e+01 1yknB 238 4.46e+01 1ykpB 238 4.50e+01 3pcgM 238 4.53e+01 3pchM b.3.6.1 22742 1h6kZ 98 4.56e+01 d.58.7.1 60686 3pcdM 238 4.66e+01 3pchM b.3.6.1 22778 1qdnA 204 4.66e+01 1qcsA b.52.2.3,d.31.1.1 26928,38462 1qcsA 211 4.71e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1zo1I 501 4.82e+01 1ua2A 346 4.93e+01 2fo7A 136 4.94e+01 1vq0A 302 4.99e+01 2ap6A 112 5.01e+01 1rhi1 288 5.03e+01 1pov1 2c2vS 78 5.10e+01 1v47A 349 5.12e+01 b.122.1.3,c.26.1.5 100292,100293 1npc 317 5.24e+01 1hyt d.92.1.2 59012 1h4cA 201 5.53e+01 c.68.1.8 83481 1awqA 164 5.81e+01 2cpl b.62.1.1 27461 1m9eA 164 5.82e+01 b.62.1.1 84894 1yndA 165 5.83e+01 2cbiA 594 6.16e+01 2gkwA 192 6.22e+01 1vjtA 483 6.38e+01 c.2.1.5,d.162.1.2 100833,100834 2alfA 164 6.49e+01 1s3aA 102 6.67e+01 1cb0A 283 6.74e+01 1cb0A c.56.2.1 33790 1h4dA 201 6.76e+01 c.68.1.8 83482 16vpA 366 6.80e+01 16vpA d.180.1.1 42601 1i60A 278 6.81e+01 c.1.15.4 71118 1fxlA 167 6.85e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 2cpqA 91 6.91e+01 1o51A 114 6.98e+01 d.58.5.4 92480 1pcvA 205 7.02e+01 b.25.1.1 94493 1h4eA 201 7.03e+01 c.68.1.8 83483 2g2bA 150 7.17e+01 1rf3A 200 7.18e+01 b.8.1.1,h.1.2.1 104915,104916 1spvA 184 7.19e+01 c.50.1.2 98957 1ybjA 178 7.21e+01 2d8yA 91 7.29e+01 1dk0A 188 7.34e+01 1b2vA d.35.1.1 38530 1zteA 198 7.46e+01 1k2wA 256 7.50e+01 c.2.1.2 90927 1flkA 228 7.55e+01 1d0aB b.8.1.1,h.1.2.1 23262,45469 2cn4A 173 7.70e+01 2bo4A 397 7.72e+01 1fr9A 194 7.74e+01 1fr9A c.68.1.8 34579 1e5kA 201 7.79e+01 1fr9A c.68.1.8 34578 1hjjA 201 7.83e+01 c.68.1.8 83487 1hjlA 201 7.84e+01 c.68.1.8 83488 1ey1A 139 7.86e+01 1eyvA a.79.1.1 18449 1iezA 217 7.91e+01 d.115.1.2 66129 1g57A 217 7.92e+01 1g57A d.115.1.2 60253 1w3bA 388 7.93e+01 a.118.8.1 109149 2etbA 256 7.95e+01 1tkiA 321 8.10e+01 1tkiA d.144.1.7 41638 1em1A 198 8.12e+01 1avmA a.2.11.1,d.44.1.1 15752,38711 1outB 146 8.15e+01 1cg5B a.1.1.2 15579 1zspA 198 8.28e+01 1jhhA 202 8.28e+01 a.4.5.2,b.87.1.1 63060,63061 1pffA 331 8.40e+01 c.67.1.3 104143 1q5hA 147 8.44e+01 b.85.4.1 95893 2bjoA 136 8.61e+01 1fh1A 92 8.62e+01 1fh1A i.11.1.1 46014 1qkzH 219 8.71e+01 1igtB b.1.1.1,b.1.1.2 20137,21167 1szxA 198 8.73e+01 a.2.11.1,d.44.1.1 99049,99050 2etcA 274 8.91e+01