# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wolA 122 4.77e-15 1ufbA 127 6.74e-14 a.24.16.3 99331 1o3uA 135 8.61e-14 a.24.16.3 86615 1wwpA 119 1.27e-01 1na3A 91 3.69e-01 k.38.1.1 85481 1t0qA 498 4.12e-01 a.25.1.2 106220 1n97A 389 7.87e-01 a.104.1.1 80335 1dwkA 156 1.14e+00 1dw9A a.35.1.4,d.72.1.1 17075,39606 1w3iA 293 1.98e+00 c.1.10.1 109152 16vpA 366 2.24e+00 16vpA d.180.1.1 42601 1rrmA 386 2.47e+00 e.22.1.2 105081 2a61A 145 2.76e+00 2cfuA 658 4.11e+00 1r9kA 172 5.39e+00 a.168.1.1 104869 1nv8A 284 5.96e+00 c.66.1.30 86224 1v3wA 173 5.97e+00 b.81.1.5 100291 2bikB 313 7.98e+00 2ftzA 284 8.09e+00 1khoA 370 8.34e+00 a.124.1.1,b.12.1.3 72489,72490 1gzsB 165 8.44e+00 a.168.1.1 76425 2d29A 387 8.71e+00 1e7uA 961 8.91e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1r71A 178 9.77e+00 a.4.14.1 104823 1yz7A 188 1.02e+01 1j30A 144 1.03e+01 a.25.1.1 90806 2gtqA 867 1.07e+01 2c1iA 431 1.19e+01 1wlxA 129 1.22e+01 1ohuA 175 1.24e+01 f.1.4.1 93029 1tqgA 105 1.29e+01 a.24.10.3 107224 1tw9A 206 1.37e+01 a.45.1.1,c.47.1.5 107381,107382 1ry6A 360 1.44e+01 c.37.1.9 98090 1kmiZ 214 1.45e+01 h.4.11.1 72752 1zemA 262 1.45e+01 2f4qA 346 1.51e+01 1q0qA 406 1.58e+01 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1lb3A 182 1.69e+01 a.25.1.1 77873 1ci4A 89 1.75e+01 1qckA a.60.5.1 17970 2fgeA 995 1.80e+01 1aun 208 1.82e+01 1thv b.25.1.1 23900 1qhdA 398 1.92e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1mo9A 523 1.92e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1e8yA 966 2.00e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1dofA 403 2.02e+01 1c3cA a.127.1.1 19429 1af7 274 2.08e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1t6aA 126 2.14e+01 d.129.8.1 106555 1y88A 199 2.15e+01 1dk0A 188 2.15e+01 1b2vA d.35.1.1 38530 1q2lA 939 2.27e+01 2bcgG 453 2.33e+01 1xx1A 285 2.33e+01 2fckA 181 2.33e+01 1jmsA 381 2.34e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1fuiA 591 2.35e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 1b0uA 262 2.43e+01 1b0uA c.37.1.12 32370 1mtyB 384 2.46e+01 1mtyB a.25.1.2 16740 1hw5A 210 2.46e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1ijyA 130 2.46e+01 1ijxA a.141.1.1 62517 1sa3A 262 2.49e+01 c.52.1.23 105400 1vk5A 157 2.51e+01 a.220.1.1 108635 1aihA 170 2.57e+01 1aihA d.163.1.1 42149 2ak3A 226 2.59e+01 1zin c.37.1.1,g.41.2.1 31892,45193 1rr7A 129 2.61e+01 a.4.1.14 105075 1sz9A 144 2.67e+01 a.118.9.4 106139 1gesA 450 2.71e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 2ck3G 272 2.78e+01 1epuA 591 2.80e+01 1dn1A e.25.1.1 43358 2e2aA 105 2.89e+01 a.7.2.1 88499 1u61A 138 2.89e+01 a.149.1.1 107696 1cv8 174 2.89e+01 1cv8 d.3.1.1 37089 1fecA 490 2.92e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1bc5A 269 2.93e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1k8kE 178 2.94e+01 a.148.1.1 68311 3grs 478 2.96e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1pl4A 198 3.04e+01 a.2.11.1,d.44.1.1 94854,94855 1pujA 282 3.11e+01 c.37.1.8 88294 1y0kA 209 3.20e+01 2btzA 394 3.21e+01 1lj2A 110 3.29e+01 h.1.13.2 73926 1tedA 393 3.29e+01 c.95.1.2 106807 1ee8A 266 3.32e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1m0kA 262 3.39e+01 f.13.1.1 78344 1gvnA 90 3.40e+01 a.8.2.1 76353 1twfB 1224 3.41e+01 1zd8A 227 3.53e+01 2g7gA 213 3.54e+01 1r29A 127 3.56e+01 d.42.1.1 96856 1oapA 109 3.60e+01 d.79.7.1 92706 1pb1A 416 3.70e+01 c.77.1.1 88014 1ca1 370 3.80e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1uc8A 280 3.80e+01 c.30.1.6,d.142.1.7 99165,99166 1yeyA 444 3.82e+01 2fkzA 155 3.85e+01 1reqA 727 4.02e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1aua 296 4.06e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1qhtA 775 4.11e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1mo0A 275 4.13e+01 c.1.1.1 79329 1y2mA 716 4.17e+01 1zk7A 467 4.17e+01 1khyA 148 4.18e+01 a.174.1.1 77410 1jihA 531 4.30e+01 d.240.1.1,e.8.1.7 90374,90375 1hyeA 313 4.31e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1w0hA 204 4.39e+01 1bf5A 545 4.43e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1a6m 151 4.48e+01 1a6m a.1.1.2 15018 1ryiA 382 4.52e+01 1h05A 146 4.74e+01 c.23.13.1 76433 1wy9A 147 4.75e+01 1b5qA 472 4.79e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 1ijxA 127 4.92e+01 1ijxA a.141.1.1 62511 2ag5A 246 4.92e+01 1yy7A 213 4.92e+01 2fp1A 166 4.93e+01 1w7jA 795 4.99e+01 1fs7A 485 5.09e+01 1qdbA a.138.1.3 19691 1elwA 118 5.09e+01 1a17 a.118.8.1 19207 1wy7A 207 5.12e+01 1oywA 523 5.15e+01 a.4.5.43,c.37.1.19,c.37.1.19 93760,93761,93762 1r5eA 115 5.25e+01 2gk9A 426 5.37e+01 1keaA 221 5.46e+01 a.96.1.2 68491 1v4xB 146 5.46e+01 a.1.1.2 108364 2fulA 178 5.49e+01 1myt 146 5.62e+01 1a6m a.1.1.2 15207 2cxaA 256 5.65e+01 1q5nA 454 5.70e+01 a.127.1.1 95901 1xg2B 153 5.72e+01 1h4rA 314 5.72e+01 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 1sbxA 106 5.74e+01 a.6.1.4 105414 1uu3A 310 5.76e+01 d.144.1.7 99999 1ml4A 308 5.77e+01 c.78.1.1,c.78.1.1 79255,79256 1vqoB 338 5.77e+01 1lddA 74 5.83e+01 a.4.5.34 73841 1ouvA 273 5.84e+01 a.118.18.1 93570 1i27A 73 5.84e+01 1i27A a.4.5.30 61555 1lvoA 302 5.86e+01 b.47.1.4 74284 1rkd 309 5.86e+01 1rkd c.72.1.1 34928 1kb9B 352 5.87e+01 d.185.1.1,d.185.1.1 77313,77314 1d1qA 161 5.90e+01 1dg9A c.44.1.1 32642 1hfeS 123 5.92e+01 1hfeS a.137.4.1 19640 2a2fX 325 5.93e+01 1wz8A 264 5.96e+01 1u9lA 70 6.02e+01 a.60.4.2 107751 1wkbA 810 6.17e+01 1uruA 244 6.20e+01 h.4.14.1 99835 1jr2A 286 6.20e+01 c.113.1.1 67111 1fzcA 87 6.21e+01 1fzcA h.1.8.1 45590 1qc7A 101 6.30e+01 1qc7A a.118.14.1 18456 1j1bA 420 6.31e+01 d.144.1.7 90758 1zcdA 388 6.34e+01 1dgnA 89 6.40e+01 1dgnA a.77.1.3 18436 1e85A 127 6.41e+01 1bbhA a.24.3.2 16549 1zin 217 6.51e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1n4qB 377 6.58e+01 a.102.4.3 91636 1z82A 335 6.59e+01 1m6jA 261 6.61e+01 c.1.1.1 78693 1vjlA 164 6.77e+01 d.257.1.1 100822 1wy5A 317 6.78e+01 2c2aA 258 6.90e+01 1yyaA 250 6.91e+01 1fit 147 6.92e+01 1fit d.13.1.1 37499 1dvpA 220 6.97e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358 2gmyA 153 7.04e+01 1vq0A 302 7.27e+01 1aky 221 7.31e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1qq5A 253 7.41e+01 1qq5A c.108.1.1 43327 1u6zA 513 7.49e+01 1mtyD 512 7.55e+01 1mhyD a.25.1.2 16742 1vls 146 7.57e+01 1vls a.24.2.1 16532 1sflA 238 7.57e+01 1z6nA 167 7.63e+01 1sauA 115 7.66e+01 1d5tA 433 7.69e+01 1gnd c.3.1.3,d.16.1.6 30422,37986 1sfkA 76 7.73e+01 a.190.1.1 105488 1qkrA 188 7.73e+01 1qkrA a.24.9.1 16628 1uwkA 557 7.74e+01 e.51.1.1 108065 1qsaA 618 7.77e+01 1qsaA a.118.5.1,d.2.1.6 19182,36988 1kq3A 376 7.80e+01 e.22.1.2 68790 1yxcA 292 7.86e+01 1b8oA 284 8.11e+01 1b8oA c.56.2.1 33762 1s21A 206 8.12e+01 d.166.1.4 105222 1k47A 337 8.12e+01 d.14.1.5,d.58.26.4 72040,72041 2g8lA 299 8.39e+01 1pufA 77 8.42e+01 a.4.1.1 95131 1ta0A 197 8.43e+01 c.108.1.16 106729 1pa7A 130 8.45e+01 a.40.1.1 94410 1pinA 163 8.50e+01 1pinA b.72.1.1,d.26.1.1 27802,38431 1hl2A 297 8.55e+01 c.1.10.1 83581 1rkbA 173 8.58e+01 1pn0A 665 8.62e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1aoy 78 8.67e+01 1aoy a.4.5.3 16087 1co6A 107 8.71e+01 1ycc a.3.1.1 15894 2gboA 104 8.73e+01 1wpnA 188 8.77e+01 1z8oA 404 8.92e+01 2iu1A 208 8.95e+01 2bs3A 656 8.99e+01