# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wolA 122 1.74e-17 1ufbA 127 3.14e-17 a.24.16.3 99331 1o3uA 135 1.20e-16 a.24.16.3 86615 1wwpA 119 2.15e-02 1na3A 91 3.30e-01 k.38.1.1 85481 1z23A 163 3.65e-01 2fymA 431 5.87e-01 1v3wA 173 6.63e-01 b.81.1.5 100291 1orjA 130 6.75e-01 a.24.19.1 93456 1ryiA 382 6.86e-01 1clc 639 7.68e-01 1clc a.102.1.2,b.1.18.2 18835,21872 1x9mA 698 1.25e+00 1fm4A 159 1.26e+00 1bv1 d.129.3.1 76186 2btoA 473 1.62e+00 1yviA 149 1.62e+00 1b5qA 472 1.77e+00 1b37B c.3.1.2,d.16.1.5 30404,37968 1gvnA 90 1.81e+00 a.8.2.1 76353 1v4pA 157 2.00e+00 1ml4A 308 2.31e+00 c.78.1.1,c.78.1.1 79255,79256 1wzuA 300 2.58e+00 1sauA 115 2.62e+00 1u4bA 580 2.82e+00 c.55.3.5,e.8.1.1 107664,107665 1n4wA 504 3.18e+00 c.3.1.2,d.16.1.1 91676,91677 2f6uA 234 3.43e+00 1rxqA 178 3.59e+00 a.213.1.1 105118 2cfuA 658 3.65e+00 1rxwA 336 3.70e+00 a.60.7.1,c.120.1.2 98059,98060 1qhdA 398 3.75e+00 1qhdA a.115.1.2,b.19.1.1 63324,63325 1h8eG 272 3.84e+00 1e79G c.49.2.1 60756 1h05A 146 3.96e+00 c.23.13.1 76433 1sc6A 404 4.16e+00 1i5nA 146 4.23e+00 1i5nA a.24.10.3 61805 1gs5A 258 4.30e+00 c.73.1.2 70395 1txdA 385 4.33e+00 a.87.1.1,b.55.1.1 107422,107423 1oapA 109 4.86e+00 d.79.7.1 92706 1nowA 507 4.94e+00 c.1.8.6,d.92.2.1 85936,85937 1sflA 238 4.95e+00 1eg5A 384 5.04e+00 1ecxA c.67.1.3 34429 1wtjA 343 5.24e+00 1yy7A 213 5.33e+00 1noyA 388 5.39e+00 1clqA c.55.3.5 33713 1wt4A 73 5.44e+00 1o5xA 248 5.46e+00 c.1.1.1 92528 1nw3A 416 5.70e+00 c.66.1.31 86288 2ag5A 246 6.15e+00 2avdA 219 6.19e+00 1q5dA 419 6.21e+00 a.104.1.1 95891 1wzcA 249 6.26e+00 2crbA 97 6.34e+00 1uarA 285 6.59e+00 c.46.1.2,c.46.1.2 107762,107763 1tw9A 206 6.74e+00 a.45.1.1,c.47.1.5 107381,107382 1ynfA 458 6.84e+00 1fit 147 6.87e+00 1fit d.13.1.1 37499 1wjgA 137 7.13e+00 1rxdA 159 7.47e+00 1c1dA 355 7.47e+00 1bw9A c.2.1.7,c.58.1.1 30270,33918 1e19A 314 7.52e+00 1b7bA c.73.1.1 34967 1q6oA 216 7.58e+00 c.1.2.3 95986 2ftzA 284 7.69e+00 1o9iA 266 7.83e+00 a.25.1.3 92671 1i60A 278 7.88e+00 c.1.15.4 71118 1fxlA 167 8.16e+00 1b7fA d.58.7.1,d.58.7.1 39183,39184 2fckA 181 8.18e+00 2c1iA 431 8.19e+00 1wkbA 810 8.24e+00 1tqgA 105 8.59e+00 a.24.10.3 107224 1tkeA 224 8.59e+00 2cxaA 256 8.64e+00 1q4rA 112 8.70e+00 d.58.4.4 95823 1t5bA 201 8.97e+00 c.23.5.3 106433 2au3A 407 8.99e+00 2fmlA 273 9.00e+00 1alvA 173 9.04e+00 1alvA a.39.1.8 17370 2g3kA 94 9.08e+00 2gx9A 129 9.15e+00 1y88A 199 9.30e+00 2fulA 178 9.68e+00 1m6sA 347 9.70e+00 c.67.1.1 78701 1r7mA 235 9.70e+00 2gyqA 175 9.89e+00 2blkA 122 1.03e+01 2akzA 439 1.03e+01 1h6kZ 98 1.04e+01 d.58.7.1 60686 1m6jA 261 1.08e+01 c.1.1.1 78693 1sedA 117 1.15e+01 a.219.1.1 105449 1lf7A 182 1.15e+01 b.60.1.1 73878 1tig 94 1.15e+01 1tig d.68.1.1 39566 1hh1A 143 1.18e+01 1gefA c.52.1.18 61036 1w3iA 293 1.19e+01 c.1.10.1 109152 1y8aA 332 1.20e+01 2ck3G 272 1.20e+01 1ct5A 256 1.21e+01 1ct5A c.1.6.2 28663 2c71A 216 1.21e+01 2aeuA 374 1.21e+01 1qc7A 101 1.22e+01 1qc7A a.118.14.1 18456 1xreA 217 1.23e+01 1vlaA 150 1.25e+01 d.227.1.2 108735 1tljA 213 1.26e+01 d.282.1.1 107126 1r2rA 248 1.27e+01 c.1.1.1 96875 1sx7A 164 1.30e+01 1b9pA 34 1.31e+01 1b9pA j.49.1.1 46328 1p68A 102 1.32e+01 k.8.1.1 94158 1k3sA 113 1.33e+01 d.198.1.1 68120 2bl8A 103 1.36e+01 2fiqA 420 1.38e+01 1ee8A 266 1.38e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 2d1pA 140 1.39e+01 1ctf 74 1.43e+01 1ctf d.45.1.1 38759 1vpqA 273 1.45e+01 1khyA 148 1.47e+01 a.174.1.1 77410 2iu1A 208 1.50e+01 1gd8A 118 1.51e+01 d.188.1.1 60445 1zv1A 65 1.51e+01 1ylmA 144 1.52e+01 2al2A 436 1.52e+01 1lddA 74 1.57e+01 a.4.5.34 73841 1lj9A 144 1.59e+01 a.4.5.28 78035 2f5vA 595 1.60e+01 1qwgA 251 1.61e+01 c.1.27.1 96473 1vljA 407 1.63e+01 e.22.1.2 108832 1xx1A 285 1.64e+01 1y0zA 330 1.67e+01 1wi6A 88 1.68e+01 1djtA 64 1.71e+01 1aho g.3.7.1 44132 1y0kA 209 1.75e+01 1tzlA 622 1.77e+01 1wx1A 335 1.80e+01 1gpuA 680 1.81e+01 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1bif 469 1.83e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1u2pA 163 1.83e+01 1te2A 226 1.86e+01 c.108.1.6 106792 1a53 247 1.93e+01 1a53 c.1.2.4 28564 1cq3A 233 1.95e+01 1cq3A b.27.1.1 23923 1bsg 266 1.95e+01 1btl e.3.1.1 42729 2dgkA 452 1.96e+01 2c5kT 95 1.99e+01 1o1xA 155 2.00e+01 c.121.1.1 86553 1ut9A 609 2.05e+01 a.102.1.2,b.1.18.2 99912,99913 1unqA 125 2.06e+01 b.55.1.1 107968 1ihgA 370 2.11e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1u9lA 70 2.16e+01 a.60.4.2 107751 1q15A 503 2.20e+01 c.26.2.1,d.153.1.1 95538,95539 1mldA 314 2.28e+01 2cmd c.2.1.5,d.162.1.1 30122,42089 1mjnA 179 2.28e+01 c.62.1.1 79210 2apjA 260 2.33e+01 1m1hA 248 2.37e+01 b.114.1.1,d.58.42.1 78415,78416 2ah5A 210 2.38e+01 2a7mA 250 2.42e+01 1lqaA 346 2.42e+01 c.1.7.1 84674 1yn9A 169 2.44e+01 1uvjA 664 2.44e+01 e.8.1.6 100045 1vplA 256 2.46e+01 1jd0A 263 2.46e+01 2cba b.74.1.1 62888 1q2lA 939 2.48e+01 2bl9A 238 2.50e+01 1c02A 166 2.56e+01 1qspA a.24.10.2 16633 1adt 356 2.59e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1guuA 52 2.60e+01 a.4.1.3 83332 5eau 548 2.61e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1wm3A 72 2.64e+01 1in0A 163 2.65e+01 d.58.49.1,d.58.49.1 83694,83695 2b67A 204 2.68e+01 1ry6A 360 2.71e+01 c.37.1.9 98090 1jf8A 131 2.76e+01 c.44.1.1 66621 1n71A 180 2.78e+01 d.108.1.1 85370 1ceo 343 2.79e+01 1ceo c.1.8.3 28808 1lk2A 274 2.80e+01 b.1.1.2,d.19.1.1 91056,91057 1i36A 264 2.83e+01 a.100.1.8,c.2.1.6 71108,71109 2c1xA 456 2.86e+01 2al1A 436 2.86e+01 1oneA 436 2.89e+01 4enl c.1.11.1,d.54.1.1 29200,38844 1aua 296 2.95e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1bw0A 416 2.96e+01 1bw0A c.67.1.1 34385 1khdA 345 2.97e+01 a.46.2.1,c.27.1.1 77400,77401 2f94F 350 2.98e+01 1lopA 164 3.01e+01 2cpl b.62.1.1 27510 1w2yA 229 3.02e+01 a.204.1.1 109140 1elwA 118 3.04e+01 1a17 a.118.8.1 19207 1vliA 385 3.04e+01 b.85.1.1,c.1.10.6 108830,108831 1zwwA 256 3.15e+01 1fnnA 389 3.19e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1mkmA 249 3.20e+01 a.4.5.33,d.110.2.2 79242,79243 1lbvA 252 3.23e+01 e.7.1.1 73813 2dh4A 340 3.23e+01 1v74A 107 3.24e+01 d.243.1.1 100442 1ia6A 441 3.24e+01 a.102.1.2 76738 1wqaA 455 3.25e+01 1y2mA 716 3.28e+01 1cuk 203 3.30e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1tm9A 137 3.33e+01 a.225.1.1 107150 1g87A 614 3.37e+01 a.102.1.2,b.2.2.2 83275,83276 1vq0A 302 3.44e+01 1n9bA 265 3.49e+01 e.3.1.1 85463 2cobA 70 3.57e+01 1xg7A 250 3.58e+01 1sbxA 106 3.61e+01 a.6.1.4 105414 1umkA 275 3.61e+01 7odcA 424 3.64e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 3cox 507 3.65e+01 1b8sA c.3.1.2,d.16.1.1 30332,37863 1vgjA 184 3.67e+01 1wiwA 290 3.69e+01 1kxoA 184 3.75e+01 b.60.1.1 84475 1t6cA 315 3.78e+01 c.55.1.8,c.55.1.8 106558,106559 2gqrA 237 3.80e+01 1wtaA 275 3.80e+01 2iugA 120 3.82e+01 1wznA 252 3.87e+01 1uasA 362 3.88e+01 b.71.1.1,c.1.8.1 88388,88389 1kk1A 410 3.90e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1vfrA 218 3.92e+01 1vfrA d.90.1.1 40247 2pth 193 3.95e+01 2pth c.56.3.1 33793 1e29A 135 3.96e+01 1e29A a.3.1.1 59161 1uzmA 247 3.98e+01 2d7vA 162 4.00e+01 1neyA 247 4.01e+01 c.1.1.1 80449 1k8kG 151 4.06e+01 a.118.13.1 68313 1vl5A 260 4.16e+01 c.66.1.41 108720 1qb2A 109 4.16e+01 1qb2A a.36.1.1 17125 1kkoA 413 4.18e+01 c.1.11.2,d.54.1.1 68675,68676 1qy1A 174 4.20e+01 b.60.1.1 96568 1fc3A 120 4.22e+01 1fc3A a.4.6.3 16237 1m7kA 99 4.23e+01 a.7.7.1 74573 3pmgA 561 4.26e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1xewX 182 4.26e+01 1y2kA 349 4.27e+01 1ji7A 89 4.34e+01 a.60.1.1 71682 1wehA 171 4.35e+01 1fjgP 88 4.39e+01 1emwA d.27.1.1 38444 1xq8A 140 4.47e+01 1wc3A 219 4.48e+01 2czvC 120 4.50e+01 1kutA 230 4.54e+01 d.143.1.1 73017 2fueA 262 4.55e+01 1zvpA 133 4.59e+01 2c46A 241 4.61e+01 1vmfA 145 4.67e+01 1u5dA 108 4.70e+01 1xi3A 215 4.74e+01 c.1.3.1 109601 1n55A 251 4.81e+01 c.1.1.1 80007 3pcgM 238 4.81e+01 3pchM b.3.6.1 22742 1o2dA 371 4.83e+01 e.22.1.2 86591 1pmmA 466 4.87e+01 c.67.1.6 94901 1qnxA 209 4.88e+01 1qnxA d.111.1.1 40914 1xviA 275 4.98e+01 1uu3A 310 4.99e+01 d.144.1.7 99999 1b8aA 438 4.99e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1lqtA 456 5.00e+01 c.3.1.1,c.4.1.1 74198,74199 1z8oA 404 5.02e+01 1dk0A 188 5.03e+01 1b2vA d.35.1.1 38530 1omhA 293 5.06e+01 d.89.1.5 93348 2btvA 901 5.07e+01 2btvA e.28.1.1 43376 1zndA 174 5.11e+01 1q8yA 373 5.13e+01 d.144.1.7 96234 1snyA 267 5.16e+01 c.2.1.2 105833 1mxiA 160 5.17e+01 c.116.1.1 79646 1s4kA 120 5.17e+01 a.35.1.6 105254 1yc9A 442 5.21e+01 1qmvA 197 5.21e+01 1qq2A c.47.1.10 33066 1t33A 224 5.23e+01 a.4.1.9,a.121.1.1 106295,106296 1pufB 73 5.26e+01 a.4.1.1 95132 1khoA 370 5.26e+01 a.124.1.1,b.12.1.3 72489,72490 1wexA 104 5.33e+01 1xzoA 174 5.36e+01 1yyaA 250 5.37e+01 2exrA 524 5.44e+01 1hfoA 113 5.50e+01 d.80.1.3 61006 2cnqA 306 5.50e+01 1zdrA 164 5.52e+01 1w2iA 91 5.54e+01 d.58.10.1 109127 2cbiA 594 5.57e+01 1tt0A 623 5.62e+01 1mi3A 322 5.65e+01 c.1.7.1 91274 1e6wA 260 5.67e+01 1e6wA c.2.1.2 59326 1kv5A 250 5.69e+01 c.1.1.1 73052 1iq8A 582 5.77e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1alu 186 5.85e+01 1alu a.26.1.1 16826 2db1A 118 5.91e+01 1elkA 157 5.96e+01 1dvpA a.118.9.2 19217 1smbA 154 5.98e+01 d.111.1.1 105756 2ex0A 399 5.98e+01 1g6aA 271 6.07e+01 1btl e.3.1.1 42704 1i1nA 226 6.13e+01 c.66.1.7 71102 1vjvA 415 6.18e+01 d.3.1.9 108632 1r71A 178 6.25e+01 a.4.14.1 104823 1obdA 306 6.28e+01 d.143.1.1 86767 2aneA 125 6.28e+01 1a9xA 1058 6.31e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1xhnA 184 6.32e+01 1gy8A 397 6.33e+01 c.2.1.2 83376 1pinA 163 6.35e+01 1pinA b.72.1.1,d.26.1.1 27802,38431 1yvhA 329 6.39e+01 1faoA 126 6.49e+01 1faoA b.55.1.1 26974 1cs0A 1073 6.51e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1k0dA 260 6.53e+01 a.45.1.1,c.47.1.5 67930,67931 1lmzA 187 6.55e+01 a.96.1.4 74037 1ttzA 87 6.59e+01 c.47.1.1 107309 1lvaA 258 6.62e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2furA 209 6.64e+01 1azo 232 6.66e+01 1azo c.52.1.14 33329 1tbfA 347 6.68e+01 a.211.1.2 106743 1qlpA 394 6.77e+01 1ovaA e.1.1.1 42628 1rrmA 386 6.79e+01 e.22.1.2 105081 1ixkA 315 6.80e+01 c.66.1.38 90716 1ywqA 200 6.83e+01 2bw2A 140 6.86e+01 1s3aA 102 6.93e+01 1f5qB 252 7.01e+01 1f5qB a.74.1.1,a.74.1.1 18362,18363 1qysA 106 7.10e+01 k.41.1.1 96603 1idrA 136 7.11e+01 1dlyA a.1.1.1 62301 1c7sA 858 7.12e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1l6rA 227 7.20e+01 c.108.1.10 77768 1v60A 123 7.22e+01 1sz9A 144 7.24e+01 a.118.9.4 106139 1e7uA 961 7.26e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1zavA 180 7.27e+01 1aj8A 371 7.28e+01 1aj8A a.103.1.1 18900 2aa1B 146 7.34e+01 1ydwA 362 7.37e+01 1bvoA 175 7.40e+01 1a3qA b.2.5.3 22457 1hq1A 105 7.41e+01 1dulA a.36.1.1 17120 1ux8A 132 7.41e+01 1l8wA 348 7.42e+01 a.154.1.1 73704 2f42A 179 7.44e+01 1aoy 78 7.44e+01 1aoy a.4.5.3 16087 1s21A 206 7.45e+01 d.166.1.4 105222 2ae0X 345 7.49e+01 1wy9A 147 7.58e+01 1w33A 181 7.62e+01 1xgsA 295 7.65e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 1o5hA 214 7.84e+01 a.191.1.1 92497 1zv9A 172 7.99e+01 1t64A 377 8.03e+01 c.42.1.2 106543 1ah7 245 8.05e+01 1ah7 a.124.1.1 19339 1kv0A 66 8.09e+01 g.3.7.1 91040 1zo0A 126 8.09e+01 1qznA 173 8.13e+01 b.2.2.2 104669 1tr0A 108 8.13e+01 d.58.4.4 107261 2a7kA 250 8.14e+01 2fvtA 135 8.23e+01 1n7oA 721 8.26e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1iugA 352 8.49e+01 c.67.1.3 90699 1t1jA 125 8.57e+01 c.137.1.1 106249 1i76A 163 8.64e+01 1hfc d.92.1.11 61877 1e8yA 966 8.65e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1tuaA 191 8.67e+01 d.51.1.1,d.51.1.1 107321,107322 2axiA 115 8.70e+01 1qavA 90 8.76e+01 1qauA b.36.1.1 24777 2cj4A 150 8.77e+01 1w2xA 758 8.77e+01 c.14.1.4,c.14.1.4 109134,109135 2gaeA 346 8.77e+01 1kb9H 93 8.81e+01 f.23.13.1 77323 1y0uA 96 8.81e+01 1i5pA 633 8.86e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 1k94A 165 8.86e+01 a.39.1.8 68333 1p5vB 147 8.90e+01 b.2.3.2 87814 2fgeA 995 8.94e+01 1vhuA 211 8.95e+01 c.50.1.2 100703 1kb9B 352 8.95e+01 d.185.1.1,d.185.1.1 77313,77314