# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wolA 122 3.56e-15 1ufbA 127 4.00e-14 a.24.16.3 99331 1o3uA 135 9.79e-14 a.24.16.3 86615 1wwpA 119 2.34e-01 1w3iA 293 4.45e-01 c.1.10.1 109152 1na3A 91 6.82e-01 k.38.1.1 85481 1t0qA 498 7.93e-01 a.25.1.2 106220 1qhdA 398 8.47e-01 1qhdA a.115.1.2,b.19.1.1 63324,63325 16vpA 366 8.98e-01 16vpA d.180.1.1 42601 1gzsB 165 9.84e-01 a.168.1.1 76425 1j30A 144 1.37e+00 a.25.1.1 90806 1xx1A 285 2.04e+00 1e7uA 961 2.45e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1r71A 178 2.47e+00 a.4.14.1 104823 1rr7A 129 2.51e+00 a.4.1.14 105075 2bptA 861 2.56e+00 1ouvA 273 2.77e+00 a.118.18.1 93570 1tqgA 105 3.66e+00 a.24.10.3 107224 2d29A 387 3.70e+00 1wkbA 810 3.78e+00 1rrmA 386 3.93e+00 e.22.1.2 105081 1nv8A 284 3.94e+00 c.66.1.30 86224 1khoA 370 3.96e+00 a.124.1.1,b.12.1.3 72489,72490 1r9kA 172 4.39e+00 a.168.1.1 104869 1e8yA 966 4.58e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1v3wA 173 4.61e+00 b.81.1.5 100291 1n97A 389 4.66e+00 a.104.1.1 80335 2fmlA 273 4.72e+00 1yyaA 250 4.84e+00 1wzaA 488 5.78e+00 1mtyB 384 6.26e+00 1mtyB a.25.1.2 16740 1g24A 211 6.37e+00 1g24A d.166.1.1 42270 2ftzA 284 6.39e+00 1tedA 393 6.57e+00 c.95.1.2 106807 1pujA 282 7.04e+00 c.37.1.8 88294 1gvnA 90 7.07e+00 a.8.2.1 76353 1tw9A 206 7.49e+00 a.45.1.1,c.47.1.5 107381,107382 2cfuA 658 7.51e+00 1wy9A 147 7.63e+00 2iu1A 208 8.16e+00 2gtqA 867 8.46e+00 2bl8A 103 8.75e+00 1ci4A 89 8.93e+00 1qckA a.60.5.1 17970 1u6zA 513 9.29e+00 1elkA 157 9.30e+00 1dvpA a.118.9.2 19217 2a2fX 325 9.43e+00 1aua 296 9.88e+00 1aua a.5.3.1,c.13.1.1 16290,30882 1bm9A 122 1.02e+01 1bm9A a.4.5.7 16116 2f42A 179 1.04e+01 1ee8A 266 1.04e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1tffA 234 1.11e+01 d.3.1.11 106854 1mo0A 275 1.12e+01 c.1.1.1 79329 1jihA 531 1.16e+01 d.240.1.1,e.8.1.7 90374,90375 1myt 146 1.16e+01 1a6m a.1.1.2 15207 1vqoB 338 1.21e+01 1lbu 213 1.25e+01 1lbu a.20.1.1,d.65.1.1 16416,39549 1m0kA 262 1.29e+01 f.13.1.1 78344 1uwkA 557 1.33e+01 e.51.1.1 108065 1m6jA 261 1.35e+01 c.1.1.1 78693 1y88A 199 1.36e+01 1y0kA 209 1.36e+01 2c1iA 431 1.37e+01 1aun 208 1.37e+01 1thv b.25.1.1 23900 1w0hA 204 1.39e+01 1sa3A 262 1.40e+01 c.52.1.23 105400 1zemA 262 1.40e+01 1bc5A 269 1.41e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 1af7 274 1.43e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1t6aA 126 1.48e+01 d.129.8.1 106555 1ca1 370 1.56e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1lb3A 182 1.57e+01 a.25.1.1 77873 1vk5A 157 1.59e+01 a.220.1.1 108635 1g0cA 364 1.64e+01 7a3hA c.1.8.3 60165 2a61A 145 1.65e+01 1pinA 163 1.70e+01 1pinA b.72.1.1,d.26.1.1 27802,38431 1k47A 337 1.73e+01 d.14.1.5,d.58.26.4 72040,72041 2ak3A 226 1.78e+01 1zin c.37.1.1,g.41.2.1 31892,45193 1uc8A 280 1.78e+01 c.30.1.6,d.142.1.7 99165,99166 2cdnA 201 1.79e+01 1dk0A 188 1.81e+01 1b2vA d.35.1.1 38530 1qhtA 775 1.81e+01 1tgoA c.55.3.5,e.8.1.1 33722,43011 1zd8A 227 1.83e+01 1fnnA 389 1.84e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1p5zB 263 1.85e+01 c.37.1.1 87815 2db0A 253 1.87e+01 1dofA 403 1.92e+01 1c3cA a.127.1.1 19429 1dwkA 156 1.92e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1ijyA 130 1.94e+01 1ijxA a.141.1.1 62517 1r2rA 248 1.96e+01 c.1.1.1 96875 1mtyD 512 2.00e+01 1mhyD a.25.1.2 16742 1wy5A 317 2.01e+01 1zk8A 183 2.03e+01 1wzuA 300 2.08e+01 1zv1A 65 2.09e+01 1siqA 392 2.14e+01 a.29.3.1,e.6.1.1 105585,105586 1oshA 232 2.14e+01 a.123.1.1 93496 1zcdA 388 2.24e+01 2b4vA 468 2.25e+01 1hyeA 313 2.27e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1jogA 146 2.29e+01 a.24.16.2 77142 1sauA 115 2.30e+01 2fp1A 166 2.33e+01 1fc3A 120 2.35e+01 1fc3A a.4.6.3 16237 1b8aA 438 2.40e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1f1eA 154 2.41e+01 a.22.1.2 64927 2a2rA 210 2.43e+01 2gmyA 153 2.48e+01 2bh7A 261 2.50e+01 1pgtA 210 2.68e+01 1pgtA a.45.1.1,c.47.1.5 17515,32809 1e29A 135 2.68e+01 1e29A a.3.1.1 59161 1j09A 468 2.75e+01 a.97.1.1,c.26.1.1 77025,77026 1eluA 390 2.76e+01 1elqA c.67.1.3 34434 2f4qA 346 2.77e+01 1wc3A 219 2.77e+01 2blkA 122 2.79e+01 1azo 232 2.79e+01 1azo c.52.1.14 33329 1rm6A 769 2.80e+01 1q2lA 939 2.80e+01 2gwfB 134 2.80e+01 1y2mA 716 2.86e+01 1b5qA 472 2.91e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 1kmiZ 214 2.96e+01 h.4.11.1 72752 2fckA 181 2.96e+01 1s9uA 207 2.97e+01 a.184.1.1 105390 1b8oA 284 3.00e+01 1b8oA c.56.2.1 33762 1n35A 1267 3.02e+01 e.8.1.4 79935 2fgeA 995 3.03e+01 1aky 221 3.06e+01 1zin c.37.1.1,g.41.2.1 31896,45197 1o5zA 442 3.13e+01 c.59.1.2,c.72.2.2 92530,92531 1dgnA 89 3.19e+01 1dgnA a.77.1.3 18436 1ohuA 175 3.27e+01 f.1.4.1 93029 2fulA 178 3.29e+01 1k78A 149 3.29e+01 a.4.1.5,a.4.1.5 68255,68256 1sz9A 144 3.30e+01 a.118.9.4 106139 1fit 147 3.37e+01 1fit d.13.1.1 37499 1sbxA 106 3.38e+01 a.6.1.4 105414 1h4rA 314 3.40e+01 a.11.2.1,b.55.1.5,d.15.1.4 65616,65617,65618 2bcgG 453 3.53e+01 1q8iA 783 3.57e+01 c.55.3.5,e.8.1.1 96208,96209 1ijxA 127 3.65e+01 1ijxA a.141.1.1 62511 1vjlA 164 3.68e+01 d.257.1.1 100822 1nogA 177 3.78e+01 a.25.2.2 85923 1o5xA 248 3.85e+01 c.1.1.1 92528 1h05A 146 3.86e+01 c.23.13.1 76433 2ag5A 246 3.90e+01 1vfrA 218 3.92e+01 1vfrA d.90.1.1 40247 1xc3A 302 3.99e+01 1sfkA 76 4.03e+01 a.190.1.1 105488 1fuiA 591 4.04e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 2genA 197 4.10e+01 1j5sA 463 4.11e+01 c.1.9.8 71580 1u61A 138 4.12e+01 a.149.1.1 107696 1oq9A 363 4.19e+01 a.25.1.2 87257 2btzA 394 4.20e+01 1ct5A 256 4.20e+01 1ct5A c.1.6.2 28663 1oapA 109 4.23e+01 d.79.7.1 92706 1srrA 124 4.31e+01 1dz3A c.23.1.1 31110 1kq3A 376 4.36e+01 e.22.1.2 68790 1yviA 149 4.41e+01 1q5nA 454 4.42e+01 a.127.1.1 95901 1ml4A 308 4.46e+01 c.78.1.1,c.78.1.1 79255,79256 1a6m 151 4.53e+01 1a6m a.1.1.2 15018 1x54A 434 4.54e+01 1z8sA 146 4.55e+01 1yz7A 188 4.58e+01 1dpsA 167 4.71e+01 1dpsA a.25.1.1 16716 1rkbA 173 4.72e+01 1z6oM 191 4.73e+01 2fmpA 335 4.74e+01 1fs7A 485 4.76e+01 1qdbA a.138.1.3 19691 1amuA 563 4.76e+01 1amuA e.23.1.1 43351 1wpnA 188 4.83e+01 1ry6A 360 4.87e+01 c.37.1.9 98090 1eexA 554 4.88e+01 1dioA c.1.19.3 29650 1n81A 186 4.90e+01 a.185.1.1 85388 1mba 147 4.91e+01 2fal a.1.1.2 15149 1kpsB 171 4.93e+01 a.118.12.1 68787 1gnxA 479 4.97e+01 c.1.8.4 76241 1lehA 364 5.03e+01 1bw9A c.2.1.7,c.58.1.1 30268,33916 1rt8A 513 5.04e+01 a.40.1.1 105095 1n55A 251 5.06e+01 c.1.1.1 80007 1mo9A 523 5.12e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1tu9A 134 5.14e+01 a.1.1.2 107320 1nowA 507 5.16e+01 c.1.8.6,d.92.2.1 85936,85937 2akzA 439 5.20e+01 1bf5A 545 5.21e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1wphA 201 5.22e+01 1q0qA 406 5.24e+01 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1rxqA 178 5.26e+01 a.213.1.1 105118 1lj2A 110 5.29e+01 h.1.13.2 73926 3grs 478 5.29e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1ta9A 450 5.31e+01 1reqA 727 5.31e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1ui5A 215 5.41e+01 a.4.1.9,a.121.1.1 107856,107857 1wiwA 290 5.41e+01 1lbkA 208 5.41e+01 a.45.1.1,c.47.1.5 73809,73810 1o2dA 371 5.44e+01 e.22.1.2 86591 1z23A 163 5.47e+01 1uocA 289 5.47e+01 c.55.3.9 99686 2e2aA 105 5.50e+01 a.7.2.1 88499 1m7vA 363 5.52e+01 d.174.1.1 78748 1xi1A 575 5.52e+01 1tn6A 382 5.59e+01 2bw3A 534 5.59e+01 1u00A 227 5.64e+01 1u9lA 70 5.65e+01 a.60.4.2 107751 1wt4A 73 5.66e+01 2ff4A 388 5.68e+01 1uruA 244 5.69e+01 h.4.14.1 99835 1mlwA 301 5.71e+01 d.178.1.1 79289 1kv5A 250 5.74e+01 c.1.1.1 73052 1hbnB 442 5.80e+01 1mroB a.89.1.1,d.58.31.2 60900,60901 1y8qA 346 5.80e+01 1t46A 313 5.82e+01 d.144.1.7 106397 2fkzA 155 5.82e+01 1z77A 200 5.97e+01 2bmaA 470 6.06e+01 2cx6A 90 6.07e+01 1qc7A 101 6.10e+01 1qc7A a.118.14.1 18456 1opjA 293 6.19e+01 d.144.1.7 87230 1khyA 148 6.23e+01 a.174.1.1 77410 1yovA 537 6.40e+01 1vrtA 560 6.52e+01 1rthA c.55.3.1,e.8.1.2 33574,43023 1t33A 224 6.61e+01 a.4.1.9,a.121.1.1 106295,106296 1nthA 458 6.65e+01 c.1.25.1 80730 1jcdA 52 6.66e+01 h.1.16.1 84157 1aocA 175 6.66e+01 1aocA g.17.1.5 44817 1w07A 659 6.68e+01 1nt2B 258 6.70e+01 a.183.1.1 86150 1h16A 759 6.75e+01 c.7.1.1 76462 2csbA 519 6.82e+01 2c71A 216 6.85e+01 1jmsA 381 6.91e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1wmiB 67 6.95e+01 1ufaA 520 6.97e+01 a.8.3.3,c.6.2.4 99329,99330 1r29A 127 7.00e+01 d.42.1.1 96856 1z2iA 358 7.11e+01 1grj 158 7.16e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1i36A 264 7.20e+01 a.100.1.8,c.2.1.6 71108,71109 1dcs 311 7.22e+01 1dcs b.82.2.1 28124 1sx7A 164 7.25e+01 1z8oA 404 7.30e+01 1tm9A 137 7.33e+01 a.225.1.1 107150 1lddA 74 7.35e+01 a.4.5.34 73841 1ydiA 263 7.35e+01 1bsg 266 7.39e+01 1btl e.3.1.1 42729 1bu8A 452 7.42e+01 1gpl b.12.1.2,c.69.1.19 23647,34795 1n0qA 93 7.49e+01 k.37.1.1 79754 1kb9B 352 7.51e+01 d.185.1.1,d.185.1.1 77313,77314 1f60A 458 7.51e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 2g3kA 94 7.54e+01 1x9zA 188 7.55e+01 1hw5A 210 7.56e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1q44A 326 7.56e+01 c.37.1.5 95779 1kblA 873 7.58e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1vlbA 907 7.58e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1yfsA 465 7.60e+01 1rreA 200 7.77e+01 d.14.1.10 97791 1wlxA 129 7.82e+01 1fpoA 171 7.84e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1pl4A 198 7.85e+01 a.2.11.1,d.44.1.1 94854,94855 1uj8A 77 7.85e+01 1u2pA 163 7.85e+01 1h6kZ 98 7.87e+01 d.58.7.1 60686 1yhtA 367 7.97e+01 1e9rA 437 8.03e+01 c.37.1.11 64827 1neyA 247 8.06e+01 c.1.1.1 80449 1u1iA 392 8.14e+01 c.2.1.3,d.81.1.3 107582,107583 1lm4A 194 8.27e+01 d.167.1.1 84626 2ar0A 541 8.32e+01 2aotA 292 8.41e+01 1mijA 152 8.42e+01 a.4.1.1 79150 1w9cA 321 8.45e+01 1wcrA 103 8.54e+01 2gboA 104 8.61e+01 1qq5A 253 8.62e+01 1qq5A c.108.1.1 43327 1uu3A 310 8.64e+01 d.144.1.7 99999 1n93X 375 8.67e+01 a.206.1.1 91707 1tt7A 330 8.76e+01 1eg5A 384 8.79e+01 1ecxA c.67.1.3 34429 1aoy 78 8.81e+01 1aoy a.4.5.3 16087 1gu9A 177 8.86e+01 a.152.1.1 65540 2bikB 313 8.92e+01 1e19A 314 9.00e+01 1b7bA c.73.1.1 34967