# TARGET T0367 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0367.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 60 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.018 0.907 0.001 0.001 0.012 0.001 0.001 0.002 0.049 0.003 0.003 0.005 2 D 0.001 0.017 0.898 0.001 0.001 0.046 0.001 0.001 0.001 0.028 0.003 0.001 0.005 3 E 0.001 0.001 0.026 0.001 0.008 0.943 0.001 0.001 0.001 0.007 0.013 0.001 0.001 4 L 0.001 0.001 0.003 0.001 0.005 0.985 0.001 0.001 0.001 0.001 0.005 0.001 0.001 5 E 0.001 0.001 0.001 0.001 0.002 0.994 0.001 0.001 0.001 0.001 0.001 0.001 0.001 6 L 0.001 0.001 0.003 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.001 0.001 0.001 7 R 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.002 0.001 0.001 8 I 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 9 R 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 10 K 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.004 0.001 0.001 11 A 0.001 0.001 0.002 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 12 E 0.001 0.001 0.002 0.001 0.003 0.986 0.001 0.001 0.001 0.002 0.008 0.001 0.001 13 K 0.001 0.001 0.002 0.001 0.004 0.961 0.001 0.001 0.001 0.001 0.032 0.001 0.001 14 L 0.001 0.001 0.004 0.001 0.004 0.943 0.001 0.001 0.001 0.003 0.046 0.001 0.001 15 V 0.001 0.001 0.021 0.001 0.003 0.951 0.001 0.001 0.001 0.012 0.013 0.001 0.001 16 Q 0.001 0.001 0.004 0.001 0.005 0.971 0.001 0.001 0.001 0.002 0.017 0.001 0.001 17 D 0.001 0.001 0.003 0.001 0.004 0.970 0.001 0.001 0.001 0.001 0.021 0.001 0.001 18 A 0.001 0.001 0.008 0.001 0.005 0.972 0.001 0.001 0.001 0.004 0.011 0.001 0.001 19 K 0.001 0.001 0.005 0.001 0.010 0.968 0.001 0.001 0.001 0.002 0.015 0.001 0.001 20 K 0.001 0.001 0.005 0.001 0.013 0.939 0.001 0.001 0.001 0.004 0.039 0.001 0.001 21 E 0.001 0.001 0.014 0.001 0.020 0.908 0.001 0.001 0.001 0.007 0.050 0.001 0.001 22 F 0.001 0.001 0.027 0.001 0.030 0.876 0.001 0.001 0.001 0.012 0.053 0.001 0.001 23 E 0.001 0.002 0.027 0.001 0.030 0.804 0.001 0.001 0.001 0.009 0.127 0.001 0.001 24 M 0.001 0.001 0.020 0.001 0.017 0.542 0.001 0.001 0.001 0.022 0.397 0.001 0.001 25 G 0.001 0.003 0.109 0.001 0.014 0.312 0.001 0.001 0.002 0.113 0.447 0.001 0.001 26 L 0.001 0.013 0.311 0.001 0.013 0.488 0.001 0.001 0.007 0.087 0.076 0.001 0.004 27 Y 0.001 0.005 0.081 0.001 0.013 0.841 0.001 0.001 0.008 0.026 0.022 0.001 0.002 28 E 0.001 0.001 0.013 0.001 0.008 0.962 0.001 0.001 0.001 0.006 0.009 0.001 0.001 29 R 0.001 0.001 0.008 0.001 0.006 0.974 0.001 0.001 0.001 0.004 0.007 0.001 0.001 30 C 0.001 0.001 0.003 0.001 0.003 0.986 0.001 0.001 0.001 0.001 0.006 0.001 0.001 31 C 0.001 0.001 0.001 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.008 0.001 0.001 32 S 0.001 0.001 0.002 0.001 0.001 0.988 0.001 0.001 0.001 0.002 0.007 0.001 0.001 33 T 0.001 0.001 0.002 0.001 0.001 0.989 0.001 0.001 0.001 0.003 0.006 0.001 0.001 34 A 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 35 Y 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 36 Y 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 37 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 38 M 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 39 F 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 40 H 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 K 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 M 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 46 L 0.001 0.001 0.001 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.009 0.001 0.001 47 L 0.001 0.001 0.001 0.001 0.003 0.953 0.001 0.001 0.001 0.001 0.041 0.001 0.001 48 G 0.001 0.001 0.011 0.001 0.008 0.765 0.001 0.001 0.001 0.006 0.208 0.001 0.001 49 Y 0.001 0.004 0.075 0.001 0.013 0.214 0.001 0.001 0.001 0.072 0.620 0.001 0.001 50 G 0.001 0.006 0.423 0.001 0.009 0.013 0.001 0.001 0.001 0.165 0.380 0.001 0.002 51 R 0.001 0.023 0.755 0.001 0.006 0.006 0.001 0.001 0.002 0.170 0.025 0.006 0.007 52 D 0.001 0.026 0.818 0.001 0.010 0.010 0.001 0.001 0.003 0.098 0.020 0.003 0.012 53 S 0.001 0.008 0.383 0.003 0.183 0.145 0.001 0.001 0.002 0.084 0.185 0.002 0.006 54 K 0.001 0.009 0.169 0.001 0.192 0.226 0.001 0.001 0.003 0.114 0.277 0.004 0.003 55 T 0.001 0.010 0.212 0.001 0.172 0.344 0.001 0.001 0.004 0.094 0.150 0.003 0.009 56 H 0.001 0.006 0.199 0.001 0.033 0.585 0.001 0.001 0.003 0.119 0.045 0.004 0.004 57 R 0.001 0.002 0.047 0.001 0.015 0.822 0.001 0.001 0.001 0.025 0.084 0.001 0.003 58 G 0.001 0.006 0.024 0.001 0.013 0.887 0.001 0.001 0.002 0.014 0.047 0.002 0.003 59 T 0.002 0.002 0.018 0.001 0.008 0.955 0.001 0.001 0.001 0.003 0.006 0.001 0.003 60 I 0.001 0.001 0.004 0.001 0.006 0.982 0.001 0.001 0.001 0.002 0.003 0.001 0.001 61 Y 0.001 0.001 0.002 0.001 0.004 0.986 0.001 0.001 0.001 0.001 0.005 0.001 0.001 62 L 0.001 0.001 0.002 0.001 0.004 0.983 0.001 0.001 0.001 0.001 0.008 0.001 0.001 63 I 0.001 0.001 0.005 0.001 0.003 0.979 0.001 0.001 0.001 0.001 0.009 0.001 0.001 64 W 0.001 0.001 0.004 0.001 0.010 0.958 0.001 0.001 0.001 0.004 0.021 0.001 0.001 65 E 0.001 0.001 0.005 0.001 0.008 0.955 0.001 0.001 0.001 0.006 0.022 0.001 0.001 66 C 0.001 0.001 0.024 0.001 0.006 0.939 0.001 0.001 0.002 0.009 0.014 0.001 0.002 67 R 0.001 0.003 0.022 0.001 0.016 0.920 0.001 0.001 0.003 0.012 0.015 0.002 0.005 68 E 0.001 0.001 0.025 0.001 0.027 0.889 0.001 0.001 0.002 0.019 0.024 0.006 0.003 69 E 0.002 0.002 0.024 0.001 0.022 0.899 0.001 0.001 0.003 0.006 0.032 0.002 0.007 70 L 0.001 0.006 0.036 0.001 0.017 0.627 0.001 0.001 0.002 0.019 0.285 0.002 0.004 71 G 0.001 0.005 0.172 0.001 0.014 0.106 0.001 0.001 0.001 0.059 0.639 0.002 0.001 72 L 0.001 0.008 0.718 0.001 0.008 0.029 0.001 0.001 0.001 0.158 0.071 0.002 0.005 73 S 0.001 0.016 0.781 0.001 0.007 0.029 0.001 0.001 0.001 0.102 0.056 0.003 0.005 74 D 0.001 0.005 0.597 0.001 0.032 0.150 0.001 0.001 0.001 0.166 0.045 0.001 0.002 75 D 0.001 0.001 0.054 0.001 0.135 0.640 0.001 0.001 0.001 0.043 0.125 0.001 0.001 76 D 0.001 0.003 0.037 0.001 0.204 0.585 0.001 0.001 0.001 0.015 0.150 0.001 0.004 77 C 0.001 0.005 0.090 0.002 0.136 0.665 0.001 0.001 0.002 0.026 0.064 0.003 0.006 78 S 0.004 0.013 0.098 0.001 0.090 0.648 0.001 0.001 0.004 0.029 0.092 0.012 0.008 79 K 0.003 0.006 0.061 0.001 0.083 0.649 0.001 0.001 0.005 0.019 0.155 0.003 0.012 80 L 0.002 0.007 0.188 0.002 0.092 0.583 0.001 0.001 0.003 0.052 0.054 0.008 0.008 81 S 0.001 0.002 0.064 0.001 0.253 0.503 0.001 0.001 0.001 0.032 0.131 0.004 0.007 82 R 0.001 0.005 0.049 0.001 0.161 0.511 0.001 0.001 0.005 0.039 0.213 0.004 0.008 83 A 0.002 0.013 0.147 0.001 0.108 0.492 0.001 0.001 0.012 0.045 0.162 0.005 0.011 84 F 0.001 0.018 0.226 0.004 0.081 0.335 0.001 0.001 0.012 0.172 0.128 0.009 0.011 85 D 0.001 0.012 0.365 0.003 0.086 0.251 0.001 0.002 0.013 0.090 0.153 0.010 0.014 86 L 0.001 0.017 0.259 0.002 0.144 0.221 0.001 0.002 0.024 0.121 0.190 0.002 0.015 87 R 0.001 0.024 0.301 0.002 0.061 0.177 0.001 0.002 0.016 0.255 0.142 0.009 0.010 88 E 0.001 0.016 0.603 0.002 0.039 0.074 0.001 0.001 0.010 0.188 0.051 0.007 0.009 89 E 0.001 0.010 0.199 0.002 0.197 0.231 0.001 0.001 0.005 0.090 0.257 0.002 0.006 90 S 0.001 0.013 0.112 0.001 0.242 0.181 0.001 0.001 0.003 0.088 0.350 0.004 0.005 91 D 0.001 0.022 0.182 0.003 0.236 0.198 0.001 0.001 0.008 0.093 0.242 0.004 0.010 92 Y 0.003 0.031 0.249 0.005 0.123 0.132 0.001 0.001 0.010 0.202 0.213 0.014 0.017 93 G 0.003 0.019 0.280 0.006 0.080 0.071 0.001 0.001 0.008 0.191 0.306 0.016 0.019 94 I 0.003 0.023 0.290 0.002 0.088 0.098 0.001 0.001 0.016 0.154 0.276 0.014 0.034 95 Y 0.004 0.030 0.409 0.007 0.051 0.079 0.002 0.001 0.014 0.241 0.107 0.011 0.047 96 K 0.002 0.010 0.418 0.003 0.036 0.050 0.001 0.001 0.009 0.347 0.072 0.035 0.018 97 E 0.001 0.028 0.679 0.001 0.023 0.052 0.001 0.001 0.010 0.060 0.077 0.005 0.063 98 V 0.001 0.081 0.668 0.001 0.009 0.026 0.001 0.001 0.005 0.143 0.047 0.014 0.006 99 S 0.001 0.005 0.881 0.001 0.001 0.016 0.001 0.001 0.001 0.086 0.004 0.001 0.005 100 K 0.001 0.001 0.001 0.001 0.006 0.985 0.001 0.001 0.001 0.001 0.007 0.001 0.001 101 D 0.001 0.001 0.001 0.001 0.005 0.991 0.001 0.001 0.001 0.001 0.003 0.001 0.001 102 L 0.001 0.001 0.001 0.001 0.007 0.990 0.001 0.001 0.001 0.001 0.002 0.001 0.001 103 A 0.001 0.001 0.002 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 104 I 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 105 K 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 106 I 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 107 L 0.001 0.001 0.002 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.003 0.001 0.001 108 K 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.005 0.001 0.001 109 D 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.008 0.001 0.001 110 A 0.001 0.001 0.004 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.001 0.001 0.001 111 E 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 112 I 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 113 F 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 114 V 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 115 Q 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 116 K 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 117 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 118 K 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 119 N 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.007 0.001 0.001 120 A 0.001 0.001 0.001 0.001 0.004 0.978 0.001 0.001 0.001 0.001 0.016 0.001 0.001 121 V 0.001 0.001 0.024 0.001 0.007 0.921 0.001 0.001 0.001 0.017 0.030 0.001 0.001 122 N 0.001 0.004 0.083 0.001 0.041 0.674 0.001 0.001 0.001 0.031 0.162 0.002 0.001 123 K 0.001 0.002 0.080 0.001 0.025 0.414 0.001 0.001 0.001 0.066 0.410 0.001 0.001 124 N 0.001 0.003 0.681 0.001 0.006 0.046 0.001 0.001 0.001 0.153 0.110 0.001 0.001 125 R 0.001 0.003 0.940 0.001 0.002 0.005 0.001 0.001 0.001 0.042 0.007 0.001 0.001