# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wolA 122 2.80e-13 1ufbA 127 9.89e-13 a.24.16.3 99331 1o3uA 135 3.31e-12 a.24.16.3 86615 1wwpA 119 2.07e-01 1t0qA 498 2.94e-01 a.25.1.2 106220 1n97A 389 1.06e+00 a.104.1.1 80335 1wtyA 119 1.49e+00 1na3A 91 2.13e+00 k.38.1.1 85481 1dwkA 156 2.26e+00 1dw9A a.35.1.4,d.72.1.1 17075,39606 16vpA 366 3.17e+00 16vpA d.180.1.1 42601 2avpA 70 3.79e+00 2ftzA 284 4.20e+00 1jm6A 407 5.03e+00 a.29.5.1,d.122.1.4 66876,66877 1w3iA 293 6.57e+00 c.1.10.1 109152 1k8kE 178 6.74e+00 a.148.1.1 68311 2fgeA 995 6.94e+00 2a61A 145 9.14e+00 1v3wA 173 9.21e+00 b.81.1.5 100291 1zemA 262 1.03e+01 2gmyA 153 1.07e+01 1sauA 115 1.10e+01 1sz9A 144 1.10e+01 a.118.9.4 106139 1nhyA 219 1.28e+01 a.45.1.1,c.47.1.5 80520,80521 1m6jA 261 1.43e+01 c.1.1.1 78693 1nv8A 284 1.50e+01 c.66.1.30 86224 1yeyA 444 1.54e+01 1xwsA 313 1.58e+01 2bikB 313 1.59e+01 1a17 166 1.60e+01 1a17 a.118.8.1 19206 1rrmA 386 1.61e+01 e.22.1.2 105081 1kmiZ 214 1.69e+01 h.4.11.1 72752 1tw9A 206 1.72e+01 a.45.1.1,c.47.1.5 107381,107382 1gkzA 388 1.88e+01 a.29.5.1,d.122.1.4 65268,65269 1r71A 178 1.91e+01 a.4.14.1 104823 1i50B 1224 1.97e+01 e.29.1.1 61755 1xx1A 285 2.03e+01 1mtyB 384 2.43e+01 1mtyB a.25.1.2 16740 1sfjA 238 2.49e+01 2a2fX 325 2.57e+01 1cv8 174 2.61e+01 1cv8 d.3.1.1 37089 1ohuA 175 2.64e+01 f.1.4.1 93029 1qhdA 398 2.65e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1s1eA 224 2.68e+01 2c1iA 431 2.70e+01 1dk0A 188 2.72e+01 1b2vA d.35.1.1 38530 1e85A 127 2.83e+01 1bbhA a.24.3.2 16549 1w0hA 204 2.92e+01 1t6aA 126 3.00e+01 d.129.8.1 106555 2c1gA 431 3.07e+01 1aihA 170 3.08e+01 1aihA d.163.1.1 42149 1uruA 244 3.09e+01 h.4.14.1 99835 1v4xB 146 3.11e+01 a.1.1.2 108364 1jihA 531 3.11e+01 d.240.1.1,e.8.1.7 90374,90375 1ap6A 198 3.21e+01 1avmA a.2.11.1,d.44.1.1 15746,38705 1u6zA 513 3.23e+01 1gesA 450 3.25e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1mo0A 275 3.25e+01 c.1.1.1 79329 1fecA 490 3.31e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1ry6A 360 3.36e+01 c.37.1.9 98090 1bf5A 545 3.41e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1r5eA 115 3.45e+01 1y0kA 209 3.52e+01 1kb9F 74 3.56e+01 f.28.1.1 77321 1yvrA 538 3.57e+01 1fuiA 591 3.64e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 1q5nA 454 3.68e+01 a.127.1.1 95901 1yyaA 250 3.70e+01 1twfB 1224 3.78e+01 1qq7A 253 3.79e+01 1qq5A c.108.1.1 43329 1qq5A 253 3.80e+01 1qq5A c.108.1.1 43327 1ta8A 332 3.87e+01 1pl4A 198 3.89e+01 a.2.11.1,d.44.1.1 94854,94855 2ck3G 272 3.92e+01 1rr7A 129 3.94e+01 a.4.1.14 105075 1b5qA 472 3.98e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 1gcb 454 3.98e+01 3gcb d.3.1.1 37034 3gcb 470 3.98e+01 3gcb d.3.1.1 37032 1zq4A 693 4.01e+01 1d1qA 161 4.03e+01 1dg9A c.44.1.1 32642 1n0nA 199 4.13e+01 a.2.11.1,d.44.1.1 79750,79751 1mo9A 523 4.20e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1ci4A 89 4.33e+01 1qckA a.60.5.1 17970 1tbmA 326 4.38e+01 a.211.1.2 106744 1gzsB 165 4.41e+01 a.168.1.1 76425 1hyeA 313 4.43e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1e7uA 961 4.49e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1vqoB 338 4.54e+01 1jj2B 337 4.55e+01 1ffkB b.43.3.2 63086 1s72B 338 4.55e+01 b.43.3.2 105320 1r9kA 172 4.56e+01 a.168.1.1 104869 2c5uA 375 4.60e+01 1elwA 118 4.74e+01 1a17 a.118.8.1 19207 2blkA 122 4.83e+01 1r2rA 248 4.84e+01 c.1.1.1 96875 1af7 274 4.87e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1yfsA 465 4.89e+01 1aun 208 4.95e+01 1thv b.25.1.1 23900 1gln 468 4.98e+01 1gln a.97.1.1,c.26.1.1 18752,31588 1fit 147 5.06e+01 1fit d.13.1.1 37499 1j09A 468 5.12e+01 a.97.1.1,c.26.1.1 77025,77026 2fckA 181 5.15e+01 1lyxA 248 5.19e+01 c.1.1.1 78304 2fhi 147 5.23e+01 1fit d.13.1.1 37505 1k94A 165 5.25e+01 a.39.1.8 68333 1ezvH 74 5.36e+01 1be3H f.28.1.1 59552 1ji7A 89 5.40e+01 a.60.1.1 71682 1zk8A 183 5.43e+01 2ag5A 246 5.47e+01 2b4vA 468 5.48e+01 1khoA 370 5.49e+01 a.124.1.1,b.12.1.3 72489,72490 2g7gA 213 5.49e+01 1xvjA 109 5.50e+01 1q2lA 939 5.56e+01 1yz7A 188 5.63e+01 5reqA 727 5.75e+01 1reqA c.1.19.1,c.23.6.1 29632,31259 2e2aA 105 5.76e+01 a.7.2.1 88499 2db0A 253 5.78e+01 1i36A 264 5.78e+01 a.100.1.8,c.2.1.6 71108,71109 1wlxA 129 5.84e+01 1ic8A 194 5.87e+01 a.4.1.1,a.35.1.1 76740,76741 2a6nA 292 5.98e+01 1q0qA 406 6.05e+01 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1dhpA 292 6.06e+01 1dhpA c.1.10.1 29097 1o5xA 248 6.09e+01 c.1.1.1 92528 2btzA 394 6.10e+01 2b0tA 738 6.15e+01 1bc5A 269 6.20e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 2a6lA 292 6.21e+01 1ukvG 453 6.27e+01 c.3.1.3,c.3.1.3,d.16.1.6 107915,107916,107917 2cfuA 658 6.28e+01 1oe9A 795 6.35e+01 b.34.3.1,c.37.1.9 92792,92793 1c3wA 222 6.36e+01 1c3wA f.13.1.1 43405 1reqA 727 6.38e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1wy5A 317 6.41e+01 2eshA 118 6.42e+01 2bcgG 453 6.43e+01 1hfeS 123 6.46e+01 1hfeS a.137.4.1 19640 1yxcA 292 6.50e+01 1n93X 375 6.57e+01 a.206.1.1 91707 2dh4A 340 6.65e+01 1xg2B 153 6.65e+01 1kb9B 352 6.67e+01 d.185.1.1,d.185.1.1 77313,77314 1jvsA 400 6.68e+01 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1ii2A 524 6.73e+01 c.91.1.1,c.109.1.1 66146,66147 1e2aA 105 6.73e+01 1e2aA a.7.2.1 16322 1pinA 163 6.78e+01 1pinA b.72.1.1,d.26.1.1 27802,38431 1qmqA 414 6.84e+01 1phd a.104.1.1 18907 2bfxA 284 6.84e+01 1ca1 370 6.86e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 2ak3A 226 6.91e+01 1zin c.37.1.1,g.41.2.1 31892,45193 1neyA 247 6.91e+01 c.1.1.1 80449 1om4A 422 6.96e+01 d.174.1.1 87067 2gtqA 867 7.12e+01 1b8oA 284 7.15e+01 1b8oA c.56.2.1 33762 1vjlA 164 7.16e+01 d.257.1.1 100822 1om2A 95 7.19e+01 1om2A a.23.4.1 16520 1pufA 77 7.28e+01 a.4.1.1 95131 1hl2A 297 7.35e+01 c.1.10.1 83581 1qqeA 292 7.43e+01 1qqeA a.118.8.1 19210 1aoy 78 7.45e+01 1aoy a.4.5.3 16087 1i45A 248 7.48e+01 1amk c.1.1.1 61665 1tpfA 250 7.67e+01 1amk c.1.1.1 28467 1elqA 390 7.73e+01 1elqA c.67.1.3 34436 1y1uA 585 7.79e+01 2f4qA 346 7.79e+01 1y88A 199 7.97e+01 1eluA 390 8.03e+01 1elqA c.67.1.3 34434 1wz8A 264 8.05e+01 1wkbA 810 8.06e+01 1ijyA 130 8.09e+01 1ijxA a.141.1.1 62517 1ji8A 111 8.15e+01 d.203.1.1 66733 1tqgA 105 8.17e+01 a.24.10.3 107224 1xrhA 351 8.21e+01 1j30A 144 8.34e+01 a.25.1.1 90806 1hw5A 210 8.37e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1u00A 227 8.39e+01 1g0cA 364 8.42e+01 7a3hA c.1.8.3 60165 1zin 217 8.53e+01 1zin c.37.1.1,g.41.2.1 31915,45178 2auaA 224 8.55e+01 1mhyD 521 8.57e+01 1mhyD a.25.1.2 16780 1ml4A 308 8.72e+01 c.78.1.1,c.78.1.1 79255,79256 2h58A 330 8.74e+01 1xi1A 575 8.80e+01 1j1bA 420 8.88e+01 d.144.1.7 90758 1re9A 414 8.90e+01 1wt4A 73 8.92e+01