# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wolA 122 1.04e-16 1ufbA 127 1.73e-15 a.24.16.3 99331 1o3uA 135 2.01e-15 a.24.16.3 86615 1wwpA 119 2.14e-01 1n97A 389 8.22e-01 a.104.1.1 80335 16vpA 366 1.21e+00 16vpA d.180.1.1 42601 1na3A 91 1.43e+00 k.38.1.1 85481 1t0qA 498 1.75e+00 a.25.1.2 106220 1wtyA 119 2.37e+00 1qhdA 398 2.73e+00 1qhdA a.115.1.2,b.19.1.1 63324,63325 1sauA 115 2.99e+00 1tbmA 326 3.02e+00 a.211.1.2 106744 1sz9A 144 3.26e+00 a.118.9.4 106139 1r71A 178 4.50e+00 a.4.14.1 104823 2gmyA 153 4.88e+00 1yoyA 175 5.09e+00 1jm6A 407 5.92e+00 a.29.5.1,d.122.1.4 66876,66877 1ci4A 89 6.27e+00 1qckA a.60.5.1 17970 1v3wA 173 6.35e+00 b.81.1.5 100291 2avpA 70 7.76e+00 1a17 166 7.91e+00 1a17 a.118.8.1 19206 2ftzA 284 8.34e+00 2cfuA 658 9.01e+00 2fgeA 995 9.19e+00 1dwkA 156 9.22e+00 1dw9A a.35.1.4,d.72.1.1 17075,39606 1gkzA 388 9.55e+00 a.29.5.1,d.122.1.4 65268,65269 1u6zA 513 1.06e+01 2fymA 431 1.27e+01 2a2fX 325 1.33e+01 2f42A 179 1.34e+01 1nhyA 219 1.40e+01 a.45.1.1,c.47.1.5 80520,80521 1y1uA 585 1.42e+01 1ry6A 360 1.53e+01 c.37.1.9 98090 1ca1 370 1.58e+01 1ca1 a.124.1.1,b.12.1.3 19340,23648 1dofA 403 1.66e+01 1c3cA a.127.1.1 19429 1nv8A 284 1.68e+01 c.66.1.30 86224 1uruA 244 1.71e+01 h.4.14.1 99835 1qazA 351 1.80e+01 1qazA a.102.3.1 18848 1k8kE 178 1.84e+01 a.148.1.1 68311 1rr7A 129 1.85e+01 a.4.1.14 105075 1nm8A 616 1.91e+01 c.43.1.3,c.43.1.3 85872,85873 1gs5A 258 1.99e+01 c.73.1.2 70395 2a1jB 91 1.99e+01 1khoA 370 2.05e+01 a.124.1.1,b.12.1.3 72489,72490 1wy5A 317 2.14e+01 1aun 208 2.26e+01 1thv b.25.1.1 23900 1tw9A 206 2.32e+01 a.45.1.1,c.47.1.5 107381,107382 1ap6A 198 2.41e+01 1avmA a.2.11.1,d.44.1.1 15746,38705 1xrhA 351 2.44e+01 1e7uA 961 2.48e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2fmlA 273 2.49e+01 1gzsB 165 2.58e+01 a.168.1.1 76425 1oapA 109 2.74e+01 d.79.7.1 92706 1n0nA 199 2.76e+01 a.2.11.1,d.44.1.1 79750,79751 2gtqA 867 2.79e+01 1bf5A 545 2.80e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 2ag5A 246 2.82e+01 1rrmA 386 2.94e+01 e.22.1.2 105081 1jipA 403 2.94e+01 a.104.1.1 66748 1s1eA 224 2.97e+01 1w3iA 293 2.98e+01 c.1.10.1 109152 1sflA 238 2.99e+01 1q44A 326 3.12e+01 c.37.1.5 95779 1bcfA 158 3.14e+01 1bcfA a.25.1.1 16648 1j30A 144 3.14e+01 a.25.1.1 90806 1t6aA 126 3.21e+01 d.129.8.1 106555 2ak3A 226 3.25e+01 1zin c.37.1.1,g.41.2.1 31892,45193 1mhyB 395 3.25e+01 1mtyB a.25.1.2 16781 2b0tA 738 3.26e+01 1vk5A 157 3.27e+01 a.220.1.1 108635 1elkA 157 3.32e+01 1dvpA a.118.9.2 19217 1reqA 727 3.45e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1sfjA 238 3.54e+01 1pl4A 198 3.60e+01 a.2.11.1,d.44.1.1 94854,94855 1hl2A 297 3.60e+01 c.1.10.1 83581 1t6jA 714 3.61e+01 1x9mA 698 3.61e+01 1e85A 127 3.69e+01 1bbhA a.24.3.2 16549 1sa3A 262 3.69e+01 c.52.1.23 105400 1kmiZ 214 3.69e+01 h.4.11.1 72752 1t7pA 698 3.70e+01 1t7pA c.55.3.5,e.8.1.1 33712,43005 1h6kZ 98 3.71e+01 d.58.7.1 60686 1y0kA 209 3.71e+01 2eshA 118 3.85e+01 1yz7A 188 3.88e+01 1cv8 174 3.91e+01 1cv8 d.3.1.1 37089 1w0hA 204 3.91e+01 1q5nA 454 3.93e+01 a.127.1.1 95901 1pme 380 3.97e+01 1hcl d.144.1.7 41653 1e8yA 966 4.01e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1bc5A 269 4.07e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 2db0A 253 4.07e+01 1af7 274 4.10e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 5reqA 727 4.10e+01 1reqA c.1.19.1,c.23.6.1 29632,31259 1yeyA 444 4.12e+01 1wkbA 810 4.14e+01 2a61A 145 4.16e+01 1hw5A 210 4.21e+01 2cgpA a.4.5.4,b.82.3.2 16098,28137 1pq4A 291 4.40e+01 c.92.2.2 94995 1xx1A 285 4.53e+01 2iu1A 208 4.72e+01 3erk 364 4.72e+01 1hcl d.144.1.7 41654 1b5qA 472 4.72e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 2c1iA 431 4.75e+01 1tufA 434 4.85e+01 b.49.2.3,c.1.6.1 107335,107336 1e9rA 437 4.89e+01 c.37.1.11 64827 1r9kA 172 4.91e+01 a.168.1.1 104869 1jj2B 337 4.95e+01 1ffkB b.43.3.2 63086 1s72B 338 4.95e+01 b.43.3.2 105320 1ornA 226 4.96e+01 a.96.1.1 87342 2c1gA 431 4.98e+01 1vqoB 338 5.00e+01 2blkA 122 5.04e+01 1s6cA 183 5.13e+01 a.39.1.5 98594 1k47A 337 5.13e+01 d.14.1.5,d.58.26.4 72040,72041 2bfxA 284 5.14e+01 2a5yA 204 5.14e+01 2g7sA 194 5.24e+01 1ynbA 173 5.29e+01 1xvjA 109 5.42e+01 1r5eA 115 5.48e+01 1xwsA 313 5.68e+01 2bikB 313 5.71e+01 1pujA 282 5.73e+01 c.37.1.8 88294 1r29A 127 5.76e+01 d.42.1.1 96856 1g2hA 61 5.94e+01 1g2hA a.4.1.12 60224 1mo9A 523 6.01e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2cwlA 302 6.03e+01 1tffA 234 6.10e+01 d.3.1.11 106854 2auaA 224 6.10e+01 1ws9A 387 6.18e+01 1u00A 227 6.18e+01 1mtyD 512 6.20e+01 1mhyD a.25.1.2 16742 1mhyD 521 6.22e+01 1mhyD a.25.1.2 16780 1h96A 182 6.23e+01 2fha a.25.1.1 60811 1lb3A 182 6.23e+01 a.25.1.1 77873 1z6nA 167 6.32e+01 1pufA 77 6.37e+01 a.4.1.1 95131 1k94A 165 6.39e+01 a.39.1.8 68333 1ji6A 589 6.43e+01 b.18.1.3,b.77.2.1,f.1.3.1 63066,63067,63068 1lmzA 187 6.71e+01 a.96.1.4 74037 1zd8A 227 6.84e+01 1nal1 297 6.86e+01 1nal3 2ffuA 501 6.92e+01 1e29A 135 7.09e+01 1e29A a.3.1.1 59161 1p5zB 263 7.10e+01 c.37.1.1 87815 2ah5A 210 7.24e+01 1zynA 202 7.25e+01 1t01A 255 7.32e+01 a.24.9.1,a.24.9.1 106188,106189 1fuiA 591 7.33e+01 1fuiA b.43.2.1,c.85.1.1 25674,35444 1nogA 177 7.34e+01 a.25.2.2 85923 1kb9F 74 7.40e+01 f.28.1.1 77321 1zemA 262 7.44e+01 1dk0A 188 7.51e+01 1b2vA d.35.1.1 38530 1fjgD 209 7.61e+01 1c05A d.66.1.2 39553 1k8uA 90 7.61e+01 a.39.1.2 72181 1hyuA 521 7.63e+01 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1z8oA 404 7.71e+01 1oe9A 795 7.74e+01 b.34.3.1,c.37.1.9 92792,92793 1wehA 171 7.75e+01 1zq4A 693 7.76e+01 1tvoA 368 7.77e+01 2fckA 181 7.81e+01 1jmsA 381 7.95e+01 a.60.6.1,a.60.12.1,d.218.1.2 66889,75862,75863 1vg5A 73 7.98e+01 1m6jA 261 8.02e+01 c.1.1.1 78693 1bm9A 122 8.08e+01 1bm9A a.4.5.7 16116 1i6xA 209 8.12e+01 a.4.5.4,b.82.3.2 83673,83674 1vjlA 164 8.12e+01 d.257.1.1 100822 1sfkA 76 8.17e+01 a.190.1.1 105488 1ezvH 74 8.21e+01 1be3H f.28.1.1 59552 2ab0A 205 8.22e+01 1hyeA 313 8.26e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1jcdA 52 8.27e+01 h.1.16.1 84157 1lnwA 147 8.28e+01 a.4.5.28 78104 1pinA 163 8.29e+01 1pinA b.72.1.1,d.26.1.1 27802,38431 1oshA 232 8.41e+01 a.123.1.1 93496 1h12A 405 8.44e+01 a.102.1.2 83447 1zb1A 392 8.61e+01 1u9lA 70 8.64e+01 a.60.4.2 107751 1eexA 554 8.74e+01 1dioA c.1.19.3 29650 1xwtA 405 8.77e+01 1yh6A 179 8.78e+01 1xq8A 140 8.81e+01 1f60A 458 8.86e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1tqyB 415 8.86e+01 c.95.1.1,c.95.1.1 107247,107248