# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wolA 122 5.13e-19 1ufbA 127 1.03e-18 a.24.16.3 99331 1o3uA 135 1.05e-17 a.24.16.3 86615 1y8aA 332 4.60e-01 1c1dA 355 2.23e+00 1bw9A c.2.1.7,c.58.1.1 30270,33918 1ihgA 370 2.31e+00 2cpl a.118.8.1,b.62.1.1 62380,62381 1v3wA 173 2.41e+00 b.81.1.5 100291 1reoA 486 2.48e+00 c.3.1.2,d.16.1.5 97325,97326 1sauA 115 3.43e+00 2b5gA 171 3.65e+00 1umkA 275 4.08e+00 1pi1A 185 4.98e+00 a.29.7.1 94699 1wehA 171 5.47e+00 1z23A 163 5.58e+00 1mldA 314 5.78e+00 2cmd c.2.1.5,d.162.1.1 30122,42089 1kxoA 184 6.12e+00 b.60.1.1 84475 1iuhA 198 6.19e+00 d.61.1.2 83711 1lqtA 456 8.34e+00 c.3.1.1,c.4.1.1 74198,74199 1snyA 267 8.54e+00 c.2.1.2 105833 1yleA 342 8.81e+00 1o0uA 429 8.89e+00 c.118.1.1 80743 1anv 356 9.03e+00 1anv a.54.1.1,g.51.1.1,g.51.1.1 17890,45365,45371 1sur 215 9.07e+00 1sur c.26.2.2 31620 1i7pA 274 9.23e+00 b.43.4.2,c.25.1.1 66048,66049 1i60A 278 9.31e+00 c.1.15.4 71118 1ndh 272 9.89e+00 1ndh b.43.4.2,c.25.1.1 25662,31552 1f8rA 498 1.07e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 1y2mA 716 1.07e+01 1itwA 741 1.07e+01 c.77.1.2 76793 1iejA 332 1.10e+01 1nnt c.94.1.2 62328 1t6jA 714 1.12e+01 1wr2A 238 1.18e+01 1wwpA 119 1.21e+01 1i6iA 366 1.22e+01 1bg2 c.37.1.9 61844 1mbe 53 1.30e+01 1mbe a.4.1.3 16038 2b8nA 429 1.36e+01 1fit 147 1.37e+01 1fit d.13.1.1 37499 1guuA 52 1.40e+01 a.4.1.3 83332 1oapA 109 1.47e+01 d.79.7.1 92706 1zclA 180 1.58e+01 1x24A 180 1.59e+01 2cfuA 658 1.62e+01 1nhyA 219 1.67e+01 a.45.1.1,c.47.1.5 80520,80521 1bif 469 1.67e+01 1bif c.37.1.7,c.60.1.4 31961,34003 1ryiA 382 1.81e+01 1t7pA 698 1.83e+01 1t7pA c.55.3.5,e.8.1.1 33712,43005 1bbpA 173 1.87e+01 1bbpA b.60.1.1 27147 1np6A 174 1.87e+01 c.37.1.10 85954 1adt 356 1.98e+01 1anv a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 1vl6A 388 1.99e+01 c.2.1.7,c.58.1.3 108724,108725 1auvA 311 2.03e+01 1auvA c.30.1.5,d.142.1.3 31723,41558 1smvA 260 2.04e+01 1smvA b.121.4.7 23288 1qx4A 274 2.06e+01 b.43.4.2,c.25.1.1 104624,104625 2fhi 147 2.12e+01 1fit d.13.1.1 37505 1nowA 507 2.21e+01 c.1.8.6,d.92.2.1 85936,85937 1bcfA 158 2.26e+01 1bcfA a.25.1.1 16648 1qhiA 366 2.46e+01 1qhiA c.37.1.1 31860 1x9mA 698 2.49e+01 1yviA 149 2.60e+01 1n4kA 381 2.71e+01 a.118.22.1,b.42.6.1 79992,79993 1o59A 355 2.75e+01 b.18.1.22,b.18.1.22 92495,92496 1ltlA 279 2.78e+01 b.40.4.11 84701 1np8A 159 2.84e+01 a.39.1.8 92022 1y0zA 330 2.86e+01 2btvA 901 2.90e+01 2btvA e.28.1.1 43376 2exrA 524 2.98e+01 1yovA 537 2.99e+01 2d1pA 140 3.05e+01 1kutA 230 3.05e+01 d.143.1.1 73017 1e6iA 121 3.07e+01 1b91A a.29.2.1 16969 1rtfB 252 3.15e+01 5ptp 2avdA 219 3.23e+01 1pxvA 183 3.46e+01 d.3.1.1 95301 1gveA 327 3.58e+01 c.1.7.1 70597 1tqhA 247 3.62e+01 c.69.1.29 107225 1ci4A 89 3.64e+01 1qckA a.60.5.1 17970 1c5yB 253 3.69e+01 5ptp 2c1iA 431 3.70e+01 1ng4A 390 3.81e+01 c.3.1.2,d.16.1.3 85666,85667 1jd0A 263 3.85e+01 2cba b.74.1.1 62888 1y0kA 209 3.89e+01 1faoA 126 3.90e+01 1faoA b.55.1.1 26974 1vmfA 145 3.91e+01 1uspA 139 4.00e+01 d.227.1.1 99879 2c1gA 431 4.01e+01 1x36A 237 4.04e+01 1tt0A 623 4.16e+01 1czyA 168 4.17e+01 1d0aB b.8.1.1,h.1.2.1 23220,45427 1gj7B 253 4.22e+01 2a11A 242 4.42e+01 1vfvA 366 4.42e+01 c.37.1.9 108592 1o0sA 605 4.48e+01 c.2.1.7,c.58.1.3 86540,86541 1kinA 366 4.57e+01 1q2lA 939 4.59e+01 2anxA 146 4.63e+01 3sdhA 146 4.86e+01 3sdhA a.1.1.2 14984 1nksA 194 4.86e+01 1nksA c.37.1.1 31886 1e2kA 331 5.03e+01 1qhiA c.37.1.1 31854 1n6zA 105 5.04e+01 d.263.1.1 85369 2pth 193 5.07e+01 2pth c.56.3.1 33793 1aun 208 5.08e+01 1thv b.25.1.1 23900 1tzlA 622 5.09e+01 2a1jB 91 5.18e+01 2fymA 431 5.31e+01 1bob 320 5.32e+01 1bob d.108.1.1 40816 1n3jA 119 5.34e+01 b.85.7.2 79963 2a4nA 182 5.36e+01 1ylmA 144 5.44e+01 2au3A 407 5.47e+01 1fm4A 159 5.48e+01 1bv1 d.129.3.1 76186 1e7wA 291 5.48e+01 c.2.1.2 59373 1gy8A 397 5.54e+01 c.2.1.2 83376 2b0tA 738 5.57e+01 1qcsA 211 5.63e+01 1qcsA b.52.2.3,d.31.1.1 26927,38461 1zckA 154 5.65e+01 1ej6D 418 5.69e+01 i.7.1.1 45970 1txdA 385 5.69e+01 a.87.1.1,b.55.1.1 107422,107423 2bk9A 153 5.70e+01 1lqaA 346 5.74e+01 c.1.7.1 84674 1rxdA 159 5.79e+01 1okgA 373 5.85e+01 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1vqoD 177 5.85e+01 2g64A 140 5.88e+01 2ch8A 201 5.88e+01 1b9oA 123 6.04e+01 3lzt d.2.1.2 36597 1rztA 331 6.25e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1r7mA 235 6.26e+01 2ex0A 399 6.38e+01 1wbpA 397 6.45e+01 1h2eA 207 6.53e+01 c.60.1.1 70857 1khyA 148 6.53e+01 a.174.1.1 77410 2gv8A 447 6.59e+01 1sbxA 106 6.67e+01 a.6.1.4 105414 1um0A 365 6.72e+01 d.258.1.1 107942 2bcqA 335 6.74e+01 1vlaA 150 6.82e+01 d.227.1.2 108735 1alvA 173 7.09e+01 1alvA a.39.1.8 17370 1qlpA 394 7.13e+01 1ovaA e.1.1.1 42628 1b87A 181 7.19e+01 1b87A d.108.1.1 40797 1pwxA 254 7.19e+01 c.2.1.2 95262 1ny9A 143 7.21e+01 a.181.1.1 86401 1xvjA 109 7.26e+01 2bw2A 140 7.26e+01 1khoA 370 7.41e+01 a.124.1.1,b.12.1.3 72489,72490 1tbfA 347 7.44e+01 a.211.1.2 106743 1s3aA 102 7.45e+01 1hw1A 239 7.51e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 1sgmA 191 7.70e+01 a.4.1.9,a.121.1.1 105537,105538 2bmaA 470 7.78e+01 2f5vA 595 7.79e+01 1n71A 180 7.85e+01 d.108.1.1 85370 1gs5A 258 7.88e+01 c.73.1.2 70395 1vjtA 483 8.05e+01 c.2.1.5,d.162.1.2 100833,100834 1sl8A 191 8.19e+01 2a13A 166 8.28e+01 1y4hA 188 8.29e+01 1s5jA 847 8.30e+01 1x33A 268 8.39e+01 2f2sA 406 8.44e+01 2ca6A 386 8.46e+01 1qwgA 251 8.49e+01 c.1.27.1 96473 1z8sA 146 8.54e+01 1s1eA 224 8.87e+01 1xgwA 176 8.88e+01 1yyvA 131 8.96e+01 1jipA 403 8.97e+01 a.104.1.1 66748