# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fneA 117 4.83e-15 2fe5A 94 1.12e-14 2fcfA 103 1.29e-14 1g9oA 91 4.71e-14 1pdr b.36.1.1 60400 1tp5A 119 8.47e-14 1qavA 90 1.22e-13 1qauA b.36.1.1 24777 1q3oA 109 2.37e-13 b.36.1.1 95700 2f0aA 98 3.69e-13 2h2bA 107 6.25e-13 1n7eA 97 7.81e-13 b.36.1.1 91691 1n7fA 97 9.62e-13 b.36.1.1 91692 1kwaA 88 2.93e-12 1kwaA b.36.1.1 24772 1ihjA 98 3.50e-12 1pdr b.36.1.1 62382 1qauA 112 8.46e-12 1qauA b.36.1.1 24779 2h3lA 103 8.79e-12 1wf7A 103 9.21e-12 1mfgA 95 1.42e-11 b.36.1.1 79043 2f5yA 91 1.69e-11 1nf3C 128 2.40e-11 b.36.1.1 85596 1r6jA 82 1.05e-10 b.36.1.1 97151 1fc6A 388 3.54e-07 1fc6A b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 1.24e-05 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 7.02e-05 1y8tA 324 1.86e-03 1zn8A 180 2.97e-02 1qb7A 236 1.02e-01 1qb7A c.61.1.1 34087 1fxlA 167 5.33e-01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1x3mA 415 7.45e-01 1bx4A 345 1.96e+00 1bx4A c.72.1.1 34935 1g2qA 187 2.36e+00 c.61.1.1 65117 1o57A 291 3.47e+00 a.4.5.40,c.61.1.1 92483,92484 1o6dA 163 3.62e+00 c.116.1.3 92567 1r31A 428 3.80e+00 d.58.20.1,d.179.1.1 96897,96898 1l1qA 186 4.20e+00 c.61.1.1 77653 1mkmA 249 4.21e+00 a.4.5.33,d.110.2.2 79242,79243 1qqqA 264 4.28e+00 1bkpA d.117.1.1 40931 1cliA 345 4.30e+00 1cliA d.79.4.1,d.139.1.1 39816,41459 2g8oA 264 4.34e+00 1mngA 203 4.50e+00 1avmA a.2.11.1,d.44.1.1 15776,38701 2g8mA 264 4.54e+00 1y0bA 197 4.80e+00 1yg9A 330 5.11e+00 1t6t1 118 5.15e+00 1h72C 296 5.25e+00 d.14.1.5,d.58.26.1 60712,60713 2bw3A 534 5.34e+00 2bh8A 101 5.34e+00 1fr3A 67 5.74e+00 1fr3A b.40.6.1 25436 1g57A 217 5.96e+00 1g57A d.115.1.2 60253 2bhoA 130 6.25e+00 1zm8A 259 6.64e+00 1vqqA 646 6.78e+00 1jalA 363 7.47e+00 c.37.1.8,d.15.10.2 84138,84139 2f69A 261 7.65e+00 1uh5A 329 7.88e+00 c.2.1.2 107840 1fsgA 233 8.25e+00 1qk3A c.61.1.1 34029 1i1wA 303 8.27e+00 c.1.8.3 76732 1nbwA 607 8.67e+00 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 2iu4A 336 8.91e+00 2gm5A 139 9.19e+00 2bsjA 133 9.56e+00 2b4aA 138 9.57e+00 1z08A 170 9.98e+00 2fvgA 340 1.01e+01 1vchA 175 1.04e+01 1vdmA 153 1.06e+01 1ypvA 313 1.09e+01 1rypB 250 1.11e+01 1rypB d.153.1.4 41933 1earA 147 1.13e+01 b.107.1.1,d.58.38.1 64875,64876 1q52A 314 1.14e+01 c.14.1.3 95846 1rf6A 427 1.15e+01 d.68.2.2 97366 1xx6A 191 1.23e+01 1vpqA 273 1.25e+01 1yy6A 155 1.26e+01 2fojA 155 1.26e+01 1gjjA 168 1.31e+01 a.140.1.1,a.140.1.1 83291,83292 1xtqA 177 1.40e+01 2bsyA 278 1.41e+01 1zxxA 319 1.41e+01 1uheA 97 1.42e+01 1jmuB 666 1.46e+01 1uylA 236 1.46e+01 d.122.1.1 108147 1xv5A 401 1.46e+01 1l0bA 229 1.49e+01 c.15.1.3,c.15.1.3 73391,73392 2az4A 429 1.52e+01 1tzfA 259 1.53e+01 c.68.1.13 107476 1o63A 219 1.70e+01 c.94.1.1 92540 1u4nA 310 1.75e+01 1w78A 422 1.76e+01 1vj0A 380 1.83e+01 b.35.1.2,c.2.1.1 100786,100787 1vkmA 297 1.92e+01 c.138.1.1 108670 1ta3B 303 1.93e+01 c.1.8.3 106732 2gwnA 452 1.94e+01 1lh0A 213 1.96e+01 c.61.1.1 73896 1cq3A 233 2.01e+01 1cq3A b.27.1.1 23923 1y791 680 2.04e+01 1bg4 302 2.10e+01 1taxA c.1.8.3 28806 1n6aA 259 2.11e+01 b.76.2.1,b.85.7.1 80121,80122 2fxqA 264 2.11e+01 1yloA 348 2.11e+01 1to2I 64 2.11e+01 1h3gA 601 2.18e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1d7oA 297 2.20e+01 1enp c.2.1.2 29907 2d4pA 141 2.22e+01 1hgxA 183 2.28e+01 1tc1A c.61.1.1 34027 1zq9A 285 2.34e+01 1fdr 248 2.35e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 1gpr 162 2.39e+01 1gpr b.84.3.1 28267 1i6pA 220 2.46e+01 1ddzA c.53.2.1 61848 1mexH 215 2.51e+01 b.1.1.1,b.1.1.2 91257,91258 2fa1A 160 2.60e+01 1zh5A 195 2.61e+01 1kw4A 89 2.64e+01 a.60.1.2 73077 2rslA 140 2.65e+01 2rslA c.53.1.1 33345 1i52A 236 2.67e+01 1i52A c.68.1.13 61767 1se8A 301 2.68e+01 b.40.4.3 105448 1a62 130 2.69e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1dmgA 225 2.81e+01 1dmgA c.22.1.1 31036 1xebA 150 2.84e+01 1p7tA 731 2.87e+01 c.1.13.1 94319 1wtaA 275 2.87e+01 1wlsA 328 2.93e+01 1x65A 89 2.96e+01 1zkpA 268 3.06e+01 1fjrA 195 3.11e+01 1fjrA b.102.1.1 59855 1oi2A 366 3.21e+01 c.119.1.2 103802 1lk2B 99 3.26e+01 b.1.1.2 91058 1eceA 358 3.28e+01 1eceA c.1.8.3 28813 1ti6A 875 3.33e+01 b.52.2.2,c.81.1.1 106974,106975 1ueoA 63 3.33e+01 j.107.1.1 99269 1amm 174 3.51e+01 1amm b.11.1.1,b.11.1.1 23587,23588 1eaxA 241 3.51e+01 b.47.1.2 64889 2d9bA 109 3.54e+01 2ghpA 292 3.57e+01 1p42A 270 3.59e+01 d.14.1.7,d.14.1.7 87754,87755 1r62A 160 3.62e+01 d.122.1.3 104816 1y7lA 316 3.67e+01 2ckiA 262 3.75e+01 1ecfA 504 3.84e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1hh1A 143 3.97e+01 1gefA c.52.1.18 61036 1ycoA 279 4.03e+01 1xdnA 277 4.15e+01 2c5qA 240 4.15e+01 1mk4A 157 4.17e+01 d.108.1.1 84979 1u9yA 284 4.21e+01 3gcb 470 4.29e+01 3gcb d.3.1.1 37032 1vc3B 97 4.30e+01 1fl1A 230 4.52e+01 1at3A b.57.1.1 27023 1jk8B 190 4.53e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 1npuA 117 4.56e+01 b.1.1.1 92038 2ahqA 76 4.63e+01 2abwA 227 4.66e+01 2b0jA 358 4.76e+01 2bw4A 340 4.76e+01 1cbf 285 4.83e+01 1cbf c.90.1.1 35587 1vlrA 350 4.84e+01 d.13.1.3,d.246.1.1 108860,108861 2b8tA 223 4.84e+01 1iscA 192 4.87e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1h05A 146 4.91e+01 c.23.13.1 76433 1iukA 140 4.95e+01 c.2.1.8 83712 1koe 172 4.99e+01 1koe d.169.1.5 42448 1js8A 394 5.03e+01 a.86.1.1,b.112.1.1 67219,67220 1eyqA 222 5.09e+01 1eypA d.36.1.1 38534 1ta3A 274 5.10e+01 c.1.8.5 106731 1vhxA 150 5.10e+01 c.55.3.8 100712 1v93A 296 5.11e+01 c.1.23.1 100532 1oq1A 223 5.14e+01 b.29.1.17 93408 1mj5A 302 5.21e+01 c.69.1.8 91285 1uc2A 481 5.22e+01 d.261.1.1 99161 1h5rA 293 5.23e+01 c.68.1.6 65623 1jy5A 212 5.23e+01 d.124.1.1 71940 1wxxA 382 5.27e+01 1wm1A 317 5.28e+01 c.69.1.7 109405 1qzzA 374 5.42e+01 a.4.5.29,c.66.1.12 96719,96720 1avaC 181 5.47e+01 1avaC b.42.4.1 25604 1cl1A 395 5.60e+01 1cl2A c.67.1.3 34395 1o3yA 166 5.62e+01 c.37.1.8 86618 1a8y 367 5.66e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1hw7A 255 5.67e+01 1i7fA d.193.1.1 61297 1e7uA 961 5.69e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 2ptd 298 5.76e+01 2plc c.1.18.2 29605 1k8qA 377 5.76e+01 c.69.1.6 72177 1wdiA 345 5.93e+01 1d4oA 184 5.99e+01 1d4oA c.31.1.4 31748 2a5dA 175 6.12e+01 1qgdA 662 6.16e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1nulA 152 6.16e+01 1nulA c.61.1.1 34011 1zj6A 187 6.23e+01 2anuA 255 6.25e+01 1siqA 392 6.26e+01 a.29.3.1,e.6.1.1 105585,105586 1ppjB 439 6.29e+01 d.185.1.1,d.185.1.1 104254,104255 1llnA 262 6.37e+01 d.165.1.1 84625 1yb3A 175 6.38e+01 1zp4A 304 6.50e+01 1evhA 112 6.52e+01 1evhA b.55.1.4 26997 1ppo 216 6.57e+01 1cs8A d.3.1.1 37020 1umdA 367 6.59e+01 c.36.1.11 99599 1kv7A 488 6.83e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1wkyA 464 6.98e+01 1qy5A 269 7.00e+01 d.122.1.1 96573 1vplA 256 7.00e+01 1vkpA 383 7.03e+01 d.126.1.6 108686 1wvhA 134 7.09e+01 1wexA 104 7.16e+01 1vraA 208 7.18e+01 1unkA 87 7.22e+01 1cei a.28.2.1 16935 2d9iA 96 7.33e+01 1yqfA 203 7.33e+01 1r7lA 110 7.45e+01 d.277.1.1 104837 2a2pA 129 7.51e+01 1yb2A 275 7.61e+01 1g6hA 257 7.66e+01 1gajA c.37.1.12 60318 1fit 147 7.82e+01 1fit d.13.1.1 37499 1htrB 329 8.05e+01 1smrA 1dkuA 317 8.08e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1rtu 114 8.17e+01 9rnt d.1.1.4 36139 1ep3B 262 8.19e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1zyiA 171 8.24e+01 1a2yB 116 8.29e+01 1gc1H b.1.1.1 19927 2apr 325 8.29e+01 2er7E b.50.1.2 26819 1deuA 277 8.40e+01 1theB d.3.1.1 37085 1whmA 92 8.41e+01 2ebn 289 8.47e+01 2ebn c.1.8.5 28990 1vjyA 303 8.53e+01 d.144.1.7 108633 1hkfA 122 8.79e+01 b.1.1.1 83553 1tyv 542 8.84e+01 1tyv b.80.1.6 28038 1vzoA 355 8.85e+01 d.144.1.7 108971 1dq3A 454 8.85e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1vr0A 247 8.94e+01 1uzvA 114 8.96e+01