# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fe5A 94 9.90e-18 2fcfA 103 1.13e-17 2fneA 117 1.60e-17 1g9oA 91 3.25e-17 1pdr b.36.1.1 60400 1qavA 90 7.61e-17 1qauA b.36.1.1 24777 1tp5A 119 7.81e-17 1q3oA 109 2.25e-16 b.36.1.1 95700 2h2bA 107 3.68e-16 1n7eA 97 1.53e-15 b.36.1.1 91691 1n7fA 97 4.01e-15 b.36.1.1 91692 1kwaA 88 5.90e-15 1kwaA b.36.1.1 24772 1ihjA 98 6.04e-15 1pdr b.36.1.1 62382 1qauA 112 1.62e-14 1qauA b.36.1.1 24779 2f0aA 98 2.74e-14 1nf3C 128 5.13e-14 b.36.1.1 85596 1wf7A 103 6.99e-14 2f5yA 91 7.16e-14 2h3lA 103 1.19e-13 1mfgA 95 1.72e-13 b.36.1.1 79043 1r6jA 82 1.22e-12 b.36.1.1 97151 1fc6A 388 1.96e-09 1fc6A b.36.1.3,c.14.1.2 64738,64739 1lcyA 325 1.21e-07 b.36.1.4,b.47.1.1 73834,73835 1te0A 318 6.06e-07 1y8tA 324 6.60e-06 1zn8A 180 7.99e-03 1qb7A 236 8.92e-02 1qb7A c.61.1.1 34087 1fxlA 167 1.50e-01 1b7fA d.58.7.1,d.58.7.1 39183,39184 1o6dA 163 3.03e-01 c.116.1.3 92567 1fr3A 67 6.05e-01 1fr3A b.40.6.1 25436 1t6t1 118 6.07e-01 1bx4A 345 6.41e-01 1bx4A c.72.1.1 34935 1g2qA 187 7.72e-01 c.61.1.1 65117 1h3gA 601 8.13e-01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1se8A 301 1.10e+00 b.40.4.3 105448 1h72C 296 1.22e+00 d.14.1.5,d.58.26.1 60712,60713 1q52A 314 1.59e+00 c.14.1.3 95846 1y0bA 197 1.59e+00 1mkmA 249 1.81e+00 a.4.5.33,d.110.2.2 79242,79243 1xx6A 191 1.81e+00 1n6aA 259 2.17e+00 b.76.2.1,b.85.7.1 80121,80122 1vchA 175 2.32e+00 2f69A 261 2.36e+00 1vdmA 153 2.72e+00 1vqqA 646 2.85e+00 1zh5A 195 2.90e+00 1fsgA 233 2.98e+00 1qk3A c.61.1.1 34029 1yg9A 330 3.00e+00 1ecfA 504 3.08e+00 1ecfB c.61.1.1,d.153.1.1 34053,41820 1ti6A 875 3.10e+00 b.52.2.2,c.81.1.1 106974,106975 1o57A 291 3.19e+00 a.4.5.40,c.61.1.1 92483,92484 1jmuB 666 3.25e+00 1l0bA 229 3.62e+00 c.15.1.3,c.15.1.3 73391,73392 1cliA 345 3.76e+00 1cliA d.79.4.1,d.139.1.1 39816,41459 2gm5A 139 4.08e+00 1fm0E 150 4.16e+00 1fmaE d.41.5.1 38629 1cq3A 233 4.17e+00 1cq3A b.27.1.1 23923 1l1qA 186 4.52e+00 c.61.1.1 77653 1x3mA 415 4.66e+00 1i1wA 303 4.70e+00 c.1.8.3 76732 1a8y 367 5.04e+00 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1htrB 329 5.08e+00 1smrA 2bsyA 278 5.18e+00 1vpqA 273 5.20e+00 2fa1A 160 5.29e+00 2fxqA 264 5.31e+00 1lh0A 213 5.35e+00 c.61.1.1 73896 1r31A 428 5.35e+00 d.58.20.1,d.179.1.1 96897,96898 2aamA 309 5.86e+00 2cu5A 129 6.20e+00 1ta3B 303 6.23e+00 c.1.8.3 106732 1kw4A 89 6.57e+00 a.60.1.2 73077 1zkpA 268 6.69e+00 2b8tA 223 6.98e+00 1uc2A 481 7.01e+00 d.261.1.1 99161 1poiA 317 7.47e+00 1poiA c.124.1.2 34153 2c5qA 240 7.68e+00 1bg4 302 7.79e+00 1taxA c.1.8.3 28806 1g57A 217 7.82e+00 1g57A d.115.1.2 60253 1zq9A 285 7.94e+00 2abwA 227 8.07e+00 1wlsA 328 8.12e+00 1a62 130 8.90e+00 1a62 a.140.3.1,b.40.4.5 64708,64709 2bhoA 130 9.00e+00 2bh8A 101 9.43e+00 2ghpA 292 9.55e+00 2bsjA 133 9.61e+00 1earA 147 9.72e+00 b.107.1.1,d.58.38.1 64875,64876 2f9dA 125 1.01e+01 2c1lA 358 1.04e+01 1yy6A 155 1.07e+01 1hgxA 183 1.07e+01 1tc1A c.61.1.1 34027 1w94A 156 1.09e+01 1rutX 188 1.11e+01 1r62A 160 1.12e+01 d.122.1.3 104816 1vj0A 380 1.13e+01 b.35.1.2,c.2.1.1 100786,100787 1y791 680 1.15e+01 2b4aA 138 1.20e+01 2fojA 155 1.24e+01 2d4pA 141 1.27e+01 2fvgA 340 1.28e+01 1oi7A 288 1.29e+01 c.2.1.8,c.23.4.1 87049,87050 1vkmA 297 1.37e+01 c.138.1.1 108670 1xebA 150 1.38e+01 2iu4A 336 1.39e+01 1q3iA 214 1.48e+01 d.220.1.1 104524 1w78A 422 1.50e+01 1s29A 92 1.52e+01 a.4.5.46 98373 1hw7A 255 1.58e+01 1i7fA d.193.1.1 61297 1jalA 363 1.64e+01 c.37.1.8,d.15.10.2 84138,84139 1a53 247 1.64e+01 1a53 c.1.2.4 28564 1xv5A 401 1.67e+01 1yloA 348 1.71e+01 1to2I 64 1.73e+01 1mk4A 157 1.78e+01 d.108.1.1 84979 2g8oA 264 1.79e+01 2g8mA 264 1.80e+01 1qqqA 264 1.82e+01 1bkpA d.117.1.1 40931 1uh5A 329 1.82e+01 c.2.1.2 107840 1eceA 358 1.87e+01 1eceA c.1.8.3 28813 1ypvA 313 1.91e+01 2brfA 110 1.99e+01 1e0tA 470 2.02e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1u9yA 284 2.04e+01 1zsyA 357 2.07e+01 2bw3A 534 2.08e+01 2rslA 140 2.15e+01 2rslA c.53.1.1 33345 1wexA 104 2.18e+01 1kv7A 488 2.24e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1y7lA 316 2.26e+01 1sv6A 269 2.29e+01 d.177.1.1 106043 1eyqA 222 2.29e+01 1eypA d.36.1.1 38534 1rypB 250 2.33e+01 1rypB d.153.1.4 41933 1koe 172 2.36e+01 1koe d.169.1.5 42448 1dekA 241 2.37e+01 1dekA c.37.1.1 31842 1zkkA 167 2.37e+01 2apr 325 2.37e+01 2er7E b.50.1.2 26819 1hh1A 143 2.41e+01 1gefA c.52.1.18 61036 1tif 78 2.45e+01 1tif d.15.8.1 37836 2fe7A 166 2.45e+01 2f51A 118 2.47e+01 1wvhA 134 2.47e+01 1vraB 215 2.48e+01 2cw8A 537 2.52e+01 1yqfA 203 2.54e+01 2fnjA 226 2.57e+01 1d4oA 184 2.58e+01 1d4oA c.31.1.4 31748 1cozA 129 2.59e+01 1cozA c.26.1.2 31598 2f6rA 281 2.60e+01 1dmgA 225 2.67e+01 1dmgA c.22.1.1 31036 1fdr 248 2.72e+01 1fdr b.43.4.2,c.25.1.1 25653,31543 2ptd 298 2.78e+01 2plc c.1.18.2 29605 1g7sA 594 2.78e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1vhxA 150 2.78e+01 c.55.3.8 100712 1xtqA 177 2.80e+01 1kk1A 410 2.80e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1p2hA 571 2.85e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1gpr 162 2.94e+01 1gpr b.84.3.1 28267 1ep3B 262 2.96e+01 1ep2B b.43.4.2,c.25.1.3 25664,31554 1qzzA 374 3.03e+01 a.4.5.29,c.66.1.12 96719,96720 1g8aA 227 3.11e+01 c.66.1.3 90506 1ycoA 279 3.13e+01 1gutA 68 3.17e+01 b.40.6.1 65576 1xdnA 277 3.21e+01 2ckiA 262 3.23e+01 1wvqA 167 3.27e+01 1yb3A 175 3.31e+01 2a19A 175 3.33e+01 1jhfA 202 3.33e+01 a.4.5.2,b.87.1.1 63057,63058 1r7lA 110 3.37e+01 d.277.1.1 104837 1sfdA 105 3.37e+01 b.6.1.1 105480 1m65A 245 3.42e+01 c.6.3.1 84847 2ahqA 76 3.48e+01 1uzvA 114 3.61e+01 1vplA 256 3.64e+01 1l5aA 436 3.71e+01 c.43.1.2,c.43.1.2 75923,75924 1trb 320 3.71e+01 1trb c.3.1.5,c.3.1.5 30529,30530 2f4wA 187 3.75e+01 1iscA 192 3.76e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1vjyA 303 3.78e+01 d.144.1.7 108633 1g6sA 427 3.78e+01 1eps d.68.2.2 39584 1npuA 117 3.81e+01 b.1.1.1 92038 1lvaA 258 3.83e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1tzfA 259 3.89e+01 c.68.1.13 107476 1mjhA 162 3.93e+01 1mjhA c.26.2.4 31639 2aefA 234 3.97e+01 2cq2A 114 4.02e+01 3gcb 470 4.05e+01 3gcb d.3.1.1 37032 1wl4A 397 4.08e+01 1n12A 138 4.13e+01 b.2.3.2 79779 1wd5A 208 4.13e+01 1id2A 106 4.15e+01 1aac b.6.1.1 62288 2f6uA 234 4.20e+01 1o8bA 219 4.20e+01 c.124.1.4,d.58.40.1 81180,81181 1bxvA 91 4.24e+01 1aac b.6.1.1 22875 1gvhA 396 4.26e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1avaC 181 4.31e+01 1avaC b.42.4.1 25604 1amm 174 4.32e+01 1amm b.11.1.1,b.11.1.1 23587,23588 1vlrA 350 4.35e+01 d.13.1.3,d.246.1.1 108860,108861 1siqA 392 4.42e+01 a.29.3.1,e.6.1.1 105585,105586 1cl1A 395 4.60e+01 1cl2A c.67.1.3 34395 1bouA 139 4.72e+01 1bouA a.88.1.1 18521 1ef8A 261 4.72e+01 1ef8A c.14.1.3 30921 1e87A 118 4.74e+01 1b6e d.169.1.1 42327 1vlmA 219 4.75e+01 c.66.1.41 108836 2f23A 156 4.76e+01 1zxxA 319 4.76e+01 1xtmA 175 4.78e+01 1j1lA 290 4.79e+01 b.82.1.12 90766 2fhqA 141 4.84e+01 2cc0A 195 4.84e+01 2cdcA 366 4.86e+01 1vc3B 97 4.92e+01 1p7tA 731 4.94e+01 c.1.13.1 94319 1a2yB 116 5.01e+01 1gc1H b.1.1.1 19927 1ojhA 65 5.02e+01 a.214.1.1 103976 1u09A 476 5.04e+01 e.8.1.4 107545 1w99A 558 5.06e+01 1wkvA 389 5.09e+01 1h9oA 112 5.11e+01 1qadA d.93.1.1 60837 2bcgG 453 5.14e+01 1t9fA 187 5.17e+01 b.42.6.1 106710 2bkfA 87 5.18e+01 1eaxA 241 5.19e+01 b.47.1.2 64889 1dq3A 454 5.21e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1y55X 126 5.26e+01 1xtoA 311 5.27e+01 1i8kB 124 5.29e+01 b.1.1.1 71131 1wrvA 308 5.31e+01 2anuA 255 5.33e+01 1rxdA 159 5.36e+01 2ck3A 510 5.43e+01 2bs3A 656 5.48e+01 1yh2A 175 5.49e+01 1w9gA 104 5.49e+01 1xm7A 195 5.55e+01 1l1dA 152 5.56e+01 b.88.1.3 73452 1nulA 152 5.56e+01 1nulA c.61.1.1 34011 2a6hC 1119 5.65e+01 1odkA 235 5.69e+01 c.56.2.1 86863 1rf6A 427 5.70e+01 d.68.2.2 97366 1aop 497 5.76e+01 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1zm8A 259 5.76e+01 1yvcA 70 5.81e+01 2eulA 156 5.81e+01 1zn6A 227 5.90e+01 1p2fA 220 5.98e+01 a.4.6.1,c.23.1.1 87720,87721 2g7jA 124 6.03e+01 1wbiA 129 6.04e+01 1n0qA 93 6.06e+01 k.37.1.1 79754 1vheA 373 6.06e+01 b.49.3.1,c.56.5.4 100669,100670 1z8gA 372 6.11e+01 1jnyA 435 6.11e+01 b.43.3.1,b.44.1.1,c.37.1.8 66982,66983,66984 1g2bA 62 6.11e+01 1tud b.34.2.1 24488 2d1pC 95 6.12e+01 1wyzA 242 6.13e+01 2d8aA 348 6.22e+01 1x65A 89 6.22e+01 1vybA 238 6.24e+01 d.151.1.1 108897 1dg6A 191 6.27e+01 1d4vB b.22.1.1 23883 1mexH 215 6.36e+01 b.1.1.1,b.1.1.2 91257,91258 1sw5A 275 6.37e+01 c.94.1.1 106069 1unkA 87 6.37e+01 1cei a.28.2.1 16935 1zrjA 50 6.53e+01 1ugmA 125 6.54e+01 d.15.1.3 107827 1kmvA 186 6.64e+01 c.71.1.1 72757 1d7oA 297 6.68e+01 1enp c.2.1.2 29907 1eexA 554 6.72e+01 1dioA c.1.19.3 29650 1vcoA 550 6.77e+01 c.23.16.1,c.37.1.10 108508,108509 1v93A 296 6.77e+01 c.1.23.1 100532 1uheA 97 6.81e+01 1wxxA 382 6.81e+01 1z47A 355 6.87e+01 1nwaA 203 6.89e+01 d.58.28.1 86295 1bvoA 175 6.90e+01 1a3qA b.2.5.3 22457 2az4A 429 6.90e+01 1wdiA 345 7.05e+01 1z96A 40 7.09e+01 2fb5A 205 7.16e+01 1smxA 96 7.25e+01 b.40.4.5 105772 1vqoH 171 7.29e+01 1dkuA 317 7.29e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1rz3A 201 7.29e+01 c.37.1.6 98132 1f20A 435 7.33e+01 b.43.4.1,c.25.1.4 64932,64933 1h8eA 510 7.35e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1rd5A 262 7.37e+01 1rypH 205 7.39e+01 d.153.1.4 41876 2cokA 113 7.43e+01 1o63A 219 7.46e+01 c.94.1.1 92540 1s98A 107 7.50e+01 b.124.1.1 105377 1g2hA 61 7.50e+01 1g2hA a.4.1.12 60224 1gky 187 7.53e+01 1gky c.37.1.1 31839 1in6A 334 7.53e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1o6aA 96 7.54e+01 b.139.1.1 92562 1rwzA 245 7.60e+01 d.131.1.2,d.131.1.2 98005,98006 1iieA 75 7.66e+01 1iieA a.109.1.1 19039 1mi3A 322 7.67e+01 c.1.7.1 91274 1yz7A 188 7.70e+01 1kamA 194 7.72e+01 c.26.1.3 72254 1tul 108 7.73e+01 1tul b.85.5.1 28373 2cxaA 256 7.73e+01 1x47A 98 7.73e+01 1yqgA 263 7.73e+01 2f7fA 494 7.87e+01 2d00A 109 8.02e+01 1h65A 270 8.04e+01 c.37.1.8 65640 2bjbA 462 8.08e+01 1j24A 143 8.15e+01 c.52.1.20 84008 1xkzA 255 8.17e+01 1olmA 403 8.27e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1fjgK 129 8.29e+01 1fjfK c.55.4.1 33733 1cjaA 342 8.30e+01 1cjaA d.144.1.3 41708 1nbwA 607 8.34e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1p99A 295 8.38e+01 c.94.1.1 94384 1umdA 367 8.39e+01 c.36.1.11 99599 2cb4A 291 8.42e+01 2d9bA 109 8.43e+01 1u9aA 160 8.47e+01 1u9aA d.20.1.1 38333 1bb9 115 8.48e+01 1bb9 b.34.2.1 24554 1m8jA 181 8.49e+01 c.26.1.3 84875 1mpp 361 8.49e+01 2rmpA b.50.1.2 26856 2fliA 220 8.51e+01 1neq 74 8.55e+01 1neq a.35.1.2 17063 1h9dB 134 8.56e+01 2jhbA b.54.1.1 60822 1bdfA 235 8.61e+01 1bdfA d.74.3.1,d.181.1.1 39727,42602 1uc7A 125 8.62e+01 c.47.1.1 99163 1vzyA 291 8.65e+01 1iq8A 582 8.65e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 1mb3A 124 8.68e+01 c.23.1.1 78907 1vfsA 386 8.75e+01 b.49.2.2,c.1.6.1 108584,108585 1o50A 157 8.81e+01 d.37.1.1,d.37.1.1 92478,92479 1h3fA 432 8.87e+01 c.26.1.1,d.66.1.4 76631,76632 1xfiA 367 8.89e+01 e.50.1.1 109584 1sflA 238 8.91e+01 1h1yA 228 8.92e+01 c.1.2.2 76506 1uarA 285 8.98e+01 c.46.1.2,c.46.1.2 107762,107763 1aozA 552 9.00e+01 1aozA b.6.1.3,b.6.1.3,b.6.1.3 23124,23125,23126