# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fneA 117 2.85e-15 1tp5A 119 4.44e-14 1be9A 119 7.61e-14 1pdr b.36.1.1 24774 2fe5A 94 7.93e-14 2fcfA 103 1.89e-13 1qavA 90 6.35e-13 1qauA b.36.1.1 24777 1g9oA 91 1.02e-12 1pdr b.36.1.1 60400 2h2bA 107 1.58e-12 1n7eA 97 4.47e-12 b.36.1.1 91691 1l6oA 95 8.98e-12 b.36.1.1 84534 1ihjA 98 1.06e-11 1pdr b.36.1.1 62382 2f0aA 98 1.24e-11 2h3lA 103 1.33e-11 1q3oA 109 1.67e-11 b.36.1.1 95700 1nf3C 128 3.25e-11 b.36.1.1 85596 1v5lA 103 3.42e-11 b.36.1.1 108378 1mfgA 95 5.22e-11 b.36.1.1 79043 1n7fA 97 5.86e-11 b.36.1.1 91692 1qauA 112 6.66e-11 1qauA b.36.1.1 24779 1wf7A 103 6.76e-11 1kwaA 88 3.41e-10 1kwaA b.36.1.1 24772 2f5yA 91 1.95e-09 1r6jA 82 4.66e-08 b.36.1.1 97151 1nteA 82 6.16e-08 b.36.1.1 86163 1lcyA 325 2.54e-05 b.36.1.4,b.47.1.1 73834,73835 1fc6A 388 2.81e-05 1fc6A b.36.1.3,c.14.1.2 64738,64739 1te0A 318 4.76e-04 1sotA 320 6.58e-03 b.36.1.4,b.47.1.1 105852,105853 2a6tA 271 1.55e-01 1y8tA 324 1.44e+00 2bh4X 134 1.46e+00 1jhfA 202 2.07e+00 a.4.5.2,b.87.1.1 63057,63058 1o63A 219 3.91e+00 c.94.1.1 92540 1fxlA 167 4.24e+00 1b7fA d.58.7.1,d.58.7.1 39183,39184 1sw5A 275 5.25e+00 c.94.1.1 106069 1p99A 295 6.79e+00 c.94.1.1 94384 1a6f 119 6.80e+00 1a6f d.14.1.2 37564 1p35A 299 6.85e+00 1p35A b.28.1.1 23925 1xtmA 175 7.81e+00 1cot 129 8.99e+00 1ycc a.3.1.1 15899 2byjA 439 9.05e+00 1sw5B 275 9.07e+00 c.94.1.1 106070 1oiaA 95 9.39e+00 d.58.7.1 87051 1xtlA 175 1.02e+01 1j24A 143 1.04e+01 c.52.1.20 84008 1r13A 148 1.10e+01 d.169.1.1,h.1.1.1 96782,96783 2axcA 264 1.11e+01 1s4iA 175 1.14e+01 1rm6A 769 1.19e+01 1r61A 207 1.20e+01 c.8.8.1 97138 1th7A 81 1.25e+01 1xrsA 516 1.27e+01 1eo6A 117 1.29e+01 1eo6A d.15.1.3 37609 2bylA 439 1.29e+01 1x6vA 630 1.30e+01 1db3A 372 1.35e+01 1db3A c.2.1.2 29813 1ucyH 150 1.39e+01 1ucyH 1nz0A 118 1.50e+01 d.14.1.2 86433 1cruA 454 1.55e+01 1c9uA b.68.2.1 27617 1vpqA 273 1.57e+01 1bx4A 345 1.58e+01 1bx4A c.72.1.1 34935 1t3qB 788 1.63e+01 d.41.1.1,d.133.1.1 106369,106370 1urnA 97 1.64e+01 1urnA d.58.7.1 39153 1dpuA 99 1.70e+01 1dpuA a.4.5.16 16150 1xebA 150 1.74e+01 1koe 172 1.80e+01 1koe d.169.1.5 42448 1a8y 367 1.90e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1l1dA 152 1.92e+01 b.88.1.3 73452 1z1dA 103 1.96e+01 1u6bA 98 2.03e+01 d.58.7.1 107703 1j08A 226 2.13e+01 c.47.1.2,c.47.1.2 83855,83856 1nu4A 97 2.19e+01 d.58.7.1 80731 1wcuA 153 2.27e+01 1kgsA 225 2.27e+01 a.4.6.1,c.23.1.1 68596,68597 1avaC 181 2.28e+01 1avaC b.42.4.1 25604 2b4aA 138 2.42e+01 1yvcA 70 2.44e+01 1ti6A 875 2.44e+01 b.52.2.2,c.81.1.1 106974,106975 1se8A 301 2.51e+01 b.40.4.3 105448 1wvqA 167 2.56e+01 1qo0D 196 2.79e+01 1qo0D c.23.1.3 31125 1tz9A 367 2.80e+01 c.1.15.6 107466 1dg6A 191 2.85e+01 1d4vB b.22.1.1 23883 2brfA 110 3.01e+01 1x1zA 252 3.06e+01 1lw6I 64 3.26e+01 d.40.1.1 74294 1quqA 129 3.36e+01 1quqA b.40.4.3 25303 1xe0A 114 3.38e+01 1l3iA 192 3.39e+01 c.66.1.22 77676 2as0A 396 3.45e+01 2oatA 439 3.53e+01 2dkb c.67.1.4 34452 2aqwA 332 3.58e+01 1f3z 161 3.62e+01 1gpr b.84.3.1 28273 1rfmA 344 3.68e+01 c.122.1.1 97385 1to2I 64 3.74e+01 1nciA 110 3.75e+01 1edhA b.1.6.1 22191 1h9oA 112 3.87e+01 1qadA d.93.1.1 60837 2etxA 209 3.97e+01 2masA 314 3.98e+01 2masA c.70.1.1 34810 1jmuB 666 4.07e+01 2adoA 196 4.15e+01 2cdqA 510 4.19e+01 1oatA 439 4.26e+01 2dkb c.67.1.4 34461 2cc0A 195 4.28e+01 1rypL 212 4.52e+01 d.153.1.4 41880 2atvA 196 4.73e+01 1jjtA 228 4.80e+01 1a7tA d.157.1.1 63139 1wdiA 345 4.87e+01 1npuA 117 4.93e+01 b.1.1.1 92038 1a8l 226 4.96e+01 1a8l c.47.1.2,c.47.1.2 32777,32778 1mq7A 154 4.98e+01 b.85.4.1 79404 1gnuA 117 5.01e+01 d.15.1.3 65403 1xewY 172 5.09e+01 1ql3A 99 5.09e+01 1ycc a.3.1.1 15822 1g8sA 230 5.14e+01 c.66.1.3 90507 2astC 69 5.24e+01 1yi9A 309 5.35e+01 1xdyA 298 5.43e+01 1reqB 637 5.47e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 1fx3A 169 5.47e+01 1fx3B d.33.1.1 38524 1fbnA 230 5.48e+01 1fbnA c.66.1.3 34181 1c4kA 730 5.50e+01 1ordA c.23.1.4,c.67.1.5,d.125.1.1 31273,34502,41123 1ihgA 370 5.51e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1j1vA 94 5.52e+01 a.4.12.2 83981 1mk4A 157 5.52e+01 d.108.1.1 84979 1srrA 124 5.58e+01 1dz3A c.23.1.1 31110 1wy0A 342 5.58e+01 1z7lA 276 5.62e+01 2bikB 313 5.63e+01 1zbtA 371 5.67e+01 1ctqA 166 5.72e+01 1ctqA c.37.1.8 31965 1xwsA 313 5.74e+01 1i8fA 81 5.75e+01 1i8fA b.38.1.1 61959 1shbA 104 5.83e+01 1fmk d.93.1.1 40425 1rwzA 245 5.87e+01 d.131.1.2,d.131.1.2 98005,98006 2h03A 291 5.89e+01 1f9aA 168 5.89e+01 1f9aA c.26.1.3 31602 1r6xA 395 5.93e+01 b.122.1.3,c.26.1.5 97167,97168 1gky 187 5.96e+01 1gky c.37.1.1 31839 1r1qA 100 6.02e+01 d.93.1.1 104763 1sdwA 314 6.07e+01 b.121.1.2,b.121.1.2 98810,98811 2bl1A 172 6.17e+01 1obfO 335 6.19e+01 c.2.1.3,d.81.1.1 86768,86769 2bhoA 130 6.27e+01 1l2mA 118 6.31e+01 d.89.1.4 77657 1k8wA 327 6.32e+01 b.122.1.1,d.265.1.2 83094,90388 1i8lC 126 6.33e+01 1ah1 b.1.1.1 61974 2ghpA 292 6.44e+01 2evwX 166 6.53e+01 1yljA 263 6.54e+01 1bxeA 113 6.64e+01 1bxeA d.55.1.1 38898 1rxwA 336 6.65e+01 a.60.7.1,c.120.1.2 98059,98060 1wvhA 134 6.70e+01 1xsnA 335 6.79e+01 1ww7A 160 6.86e+01 1xpjA 126 6.93e+01 2eu9A 355 7.00e+01 1nvmA 345 7.03e+01 a.5.7.1,c.1.10.5 86249,86250 2affA 120 7.03e+01 1kw4A 89 7.06e+01 a.60.1.2 73077 1s29A 92 7.11e+01 a.4.5.46 98373 1eso 154 7.14e+01 1yaiA b.1.8.1 22293 2aa4A 289 7.35e+01 1mb3A 124 7.39e+01 c.23.1.1 78907 1wqsA 173 7.46e+01 2f7fA 494 7.46e+01 1shsA 147 7.55e+01 1shsA b.15.1.1 23675 1ex7A 186 7.57e+01 1gky c.37.1.1 59537 1vs0A 310 7.58e+01 1pueE 89 7.58e+01 1awcA a.4.5.21 16165 1oroA 213 7.59e+01 1opr c.61.1.1 34093 1xo5A 183 7.81e+01 1xv5A 401 7.84e+01 2gu3A 136 7.92e+01 1ijgA 309 7.96e+01 1fouA e.27.1.1 62493 1y96A 86 8.01e+01 2bw3A 534 8.11e+01 1cliA 345 8.17e+01 1cliA d.79.4.1,d.139.1.1 39816,41459 1zpwX 90 8.24e+01 2fe7A 166 8.24e+01 1tmy 120 8.35e+01 1dbwA c.23.1.1 31083 1unkA 87 8.37e+01 1cei a.28.2.1 16935 2bcqA 335 8.41e+01 1ztxE 108 8.44e+01 1cei 94 8.52e+01 1cei a.28.2.1 16939 1zj6A 187 8.55e+01 1pgl2 370 8.57e+01 2bsjA 133 8.61e+01 1cozA 129 8.67e+01 1cozA c.26.1.2 31598 1rtu 114 8.70e+01 9rnt d.1.1.4 36139 2bshA 125 8.75e+01 1rz2A 254 8.87e+01 b.100.1.1 105130 1yoeA 322 8.91e+01 1w94A 156 8.99e+01