# TARGET T0365 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0365.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 91 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.011 0.006 0.004 0.039 0.184 0.755 2 P 0.033 0.042 0.010 0.129 0.228 0.558 3 V 0.037 0.023 0.019 0.197 0.312 0.413 4 N 0.028 0.010 0.042 0.213 0.377 0.330 5 S 0.035 0.022 0.067 0.238 0.395 0.243 6 I 0.058 0.037 0.080 0.225 0.367 0.233 7 L 0.046 0.028 0.093 0.273 0.343 0.217 8 G 0.032 0.008 0.054 0.083 0.493 0.331 9 V 0.018 0.006 0.159 0.109 0.475 0.233 10 F 0.018 0.011 0.227 0.098 0.474 0.172 11 A 0.017 0.006 0.105 0.148 0.472 0.252 12 K 0.019 0.009 0.047 0.207 0.313 0.406 13 S 0.023 0.009 0.012 0.181 0.215 0.560 14 P 0.008 0.003 0.014 0.779 0.077 0.119 15 I 0.005 0.001 0.007 0.929 0.031 0.028 16 K 0.006 0.001 0.006 0.933 0.028 0.026 17 P 0.002 0.001 0.004 0.966 0.011 0.016 18 L 0.002 0.001 0.002 0.975 0.005 0.016 19 Q 0.001 0.001 0.001 0.995 0.001 0.002 20 E 0.001 0.001 0.001 0.996 0.001 0.002 21 H 0.001 0.001 0.001 0.996 0.001 0.002 22 M 0.001 0.001 0.001 0.999 0.001 0.001 23 D 0.001 0.001 0.001 0.999 0.001 0.001 24 K 0.001 0.001 0.001 0.998 0.001 0.001 25 V 0.001 0.001 0.001 0.998 0.001 0.001 26 Y 0.001 0.001 0.001 0.998 0.001 0.001 27 D 0.001 0.001 0.001 0.994 0.002 0.004 28 C 0.001 0.001 0.001 0.994 0.001 0.004 29 A 0.001 0.001 0.001 0.990 0.002 0.007 30 S 0.001 0.001 0.002 0.986 0.006 0.006 31 L 0.001 0.001 0.003 0.985 0.005 0.007 32 L 0.001 0.001 0.002 0.984 0.004 0.010 33 V 0.001 0.001 0.001 0.992 0.003 0.004 34 P 0.001 0.001 0.001 0.993 0.003 0.002 35 F 0.001 0.001 0.001 0.993 0.003 0.002 36 F 0.001 0.001 0.002 0.990 0.005 0.003 37 E 0.001 0.001 0.002 0.984 0.009 0.004 38 A 0.001 0.001 0.003 0.978 0.013 0.006 39 T 0.001 0.001 0.006 0.957 0.024 0.013 40 I 0.001 0.001 0.015 0.842 0.082 0.059 41 T 0.002 0.002 0.018 0.648 0.202 0.129 42 G 0.002 0.002 0.012 0.176 0.371 0.437 43 N 0.001 0.002 0.007 0.050 0.350 0.590 44 W 0.002 0.002 0.123 0.397 0.387 0.088 45 D 0.002 0.002 0.149 0.529 0.257 0.061 46 D 0.002 0.002 0.123 0.710 0.111 0.052 47 A 0.003 0.001 0.020 0.917 0.028 0.031 48 V 0.003 0.001 0.007 0.938 0.028 0.023 49 Q 0.002 0.001 0.008 0.950 0.023 0.016 50 I 0.002 0.001 0.004 0.959 0.017 0.017 51 R 0.001 0.001 0.005 0.973 0.011 0.009 52 K 0.001 0.001 0.003 0.971 0.012 0.012 53 Q 0.001 0.001 0.003 0.962 0.008 0.027 54 I 0.001 0.001 0.001 0.989 0.003 0.007 55 S 0.001 0.001 0.002 0.985 0.007 0.007 56 L 0.001 0.001 0.003 0.980 0.009 0.008 57 A 0.001 0.001 0.004 0.975 0.012 0.008 58 E 0.001 0.001 0.004 0.975 0.012 0.007 59 K 0.001 0.001 0.004 0.946 0.025 0.024 60 Q 0.001 0.001 0.007 0.940 0.021 0.031 61 G 0.001 0.001 0.004 0.967 0.011 0.017 62 D 0.001 0.001 0.006 0.946 0.020 0.028 63 S 0.001 0.001 0.004 0.973 0.010 0.012 64 L 0.001 0.001 0.003 0.975 0.007 0.013 65 K 0.001 0.001 0.001 0.994 0.002 0.003 66 R 0.001 0.001 0.001 0.995 0.002 0.002 67 E 0.001 0.001 0.001 0.995 0.002 0.002 68 I 0.001 0.001 0.002 0.994 0.002 0.001 69 R 0.001 0.001 0.009 0.982 0.007 0.002 70 L 0.001 0.001 0.020 0.960 0.016 0.004 71 T 0.001 0.001 0.037 0.852 0.067 0.042 72 L 0.007 0.018 0.053 0.363 0.288 0.271 73 P 0.015 0.004 0.110 0.100 0.558 0.212 74 S 0.021 0.002 0.236 0.089 0.511 0.141 75 G 0.189 0.010 0.179 0.056 0.406 0.161 76 L 0.638 0.012 0.030 0.026 0.145 0.149 77 F 0.617 0.008 0.006 0.010 0.071 0.287 78 M 0.753 0.022 0.003 0.007 0.056 0.159 79 P 0.502 0.021 0.008 0.019 0.152 0.298 80 V 0.090 0.031 0.006 0.031 0.249 0.592 81 E 0.023 0.006 0.008 0.056 0.213 0.695 82 R 0.002 0.001 0.209 0.607 0.110 0.071 83 T 0.002 0.001 0.145 0.670 0.094 0.088 84 D 0.001 0.001 0.150 0.779 0.042 0.027 85 L 0.001 0.001 0.008 0.978 0.006 0.007 86 L 0.001 0.001 0.003 0.989 0.006 0.002 87 E 0.001 0.001 0.003 0.979 0.011 0.006 88 L 0.001 0.001 0.002 0.977 0.012 0.009 89 L 0.001 0.001 0.001 0.991 0.005 0.003 90 T 0.001 0.001 0.002 0.986 0.008 0.004 91 Q 0.001 0.001 0.002 0.982 0.008 0.007 92 Q 0.001 0.001 0.002 0.989 0.004 0.004 93 D 0.001 0.001 0.003 0.983 0.008 0.007 94 K 0.001 0.001 0.002 0.978 0.008 0.010 95 I 0.001 0.001 0.001 0.985 0.003 0.011 96 A 0.001 0.001 0.001 0.998 0.001 0.001 97 N 0.001 0.001 0.001 0.994 0.003 0.003 98 K 0.001 0.001 0.001 0.994 0.003 0.003 99 A 0.001 0.001 0.001 0.994 0.003 0.002 100 K 0.001 0.001 0.001 0.993 0.004 0.002 101 D 0.001 0.001 0.001 0.983 0.008 0.008 102 I 0.001 0.001 0.002 0.977 0.009 0.011 103 S 0.002 0.001 0.007 0.940 0.026 0.024 104 G 0.005 0.003 0.013 0.921 0.031 0.029 105 R 0.010 0.002 0.015 0.878 0.049 0.046 106 V 0.025 0.002 0.016 0.847 0.048 0.061 107 I 0.067 0.006 0.023 0.716 0.069 0.120 108 G 0.057 0.007 0.037 0.719 0.083 0.098 109 R 0.051 0.010 0.045 0.579 0.135 0.179 110 Q 0.048 0.004 0.034 0.215 0.238 0.462 111 L 0.033 0.008 0.021 0.124 0.239 0.575 112 L 0.027 0.015 0.014 0.069 0.210 0.664 113 I 0.015 0.008 0.010 0.049 0.200 0.719 114 P 0.009 0.002 0.013 0.137 0.152 0.687 115 Q 0.004 0.001 0.028 0.587 0.132 0.248 116 A 0.002 0.001 0.032 0.783 0.087 0.096 117 L 0.001 0.001 0.027 0.850 0.056 0.064 118 Q 0.001 0.001 0.007 0.955 0.014 0.022 119 V 0.001 0.001 0.004 0.970 0.012 0.013 120 P 0.001 0.001 0.005 0.982 0.005 0.007 121 F 0.001 0.001 0.002 0.990 0.003 0.005 122 I 0.001 0.001 0.001 0.998 0.001 0.001 123 A 0.001 0.001 0.001 0.998 0.001 0.001 124 Y 0.001 0.001 0.001 0.998 0.001 0.001 125 L 0.001 0.001 0.001 0.998 0.001 0.001 126 Q 0.001 0.001 0.001 0.997 0.002 0.001 127 R 0.001 0.001 0.001 0.991 0.004 0.005 128 C 0.001 0.001 0.001 0.987 0.002 0.010 129 I 0.001 0.001 0.001 0.994 0.001 0.004 130 D 0.001 0.001 0.001 0.992 0.003 0.005 131 A 0.001 0.001 0.001 0.995 0.002 0.002 132 V 0.001 0.001 0.001 0.992 0.003 0.003 133 G 0.001 0.001 0.002 0.990 0.005 0.004 134 L 0.001 0.001 0.002 0.981 0.008 0.010 135 A 0.001 0.001 0.001 0.982 0.005 0.013 136 Q 0.001 0.001 0.001 0.989 0.003 0.007 137 Q 0.001 0.001 0.002 0.973 0.011 0.015 138 V 0.001 0.001 0.003 0.987 0.005 0.005 139 I 0.001 0.001 0.004 0.986 0.006 0.004 140 N 0.001 0.001 0.005 0.984 0.007 0.004 141 E 0.001 0.001 0.004 0.984 0.006 0.007 142 L 0.001 0.001 0.002 0.988 0.005 0.005 143 D 0.001 0.001 0.002 0.984 0.008 0.005 144 D 0.001 0.001 0.002 0.968 0.017 0.011 145 L 0.004 0.001 0.003 0.964 0.018 0.010 146 L 0.005 0.001 0.007 0.953 0.022 0.013 147 E 0.005 0.001 0.009 0.917 0.036 0.031 148 A 0.003 0.001 0.019 0.835 0.053 0.088 149 G 0.006 0.006 0.007 0.084 0.285 0.613 150 F 0.007 0.008 0.018 0.037 0.363 0.567 151 R 0.008 0.008 0.022 0.055 0.562 0.346 152 G 0.004 0.002 0.101 0.396 0.410 0.087 153 R 0.014 0.006 0.070 0.624 0.193 0.093 154 E 0.013 0.006 0.037 0.848 0.055 0.041 155 V 0.012 0.001 0.019 0.922 0.020 0.027 156 D 0.012 0.001 0.015 0.930 0.017 0.024 157 F 0.010 0.001 0.019 0.939 0.014 0.017 158 V 0.007 0.001 0.007 0.963 0.008 0.015 159 A 0.006 0.001 0.004 0.974 0.006 0.009 160 K 0.005 0.001 0.003 0.966 0.011 0.014 161 M 0.002 0.001 0.002 0.975 0.006 0.014 162 I 0.001 0.001 0.002 0.980 0.005 0.011 163 N 0.001 0.001 0.002 0.982 0.006 0.008 164 E 0.001 0.001 0.002 0.983 0.004 0.010 165 L 0.001 0.001 0.001 0.994 0.001 0.004 166 D 0.001 0.001 0.001 0.993 0.003 0.004 167 I 0.001 0.001 0.001 0.992 0.003 0.003 168 I 0.001 0.001 0.001 0.992 0.004 0.003 169 E 0.001 0.001 0.001 0.993 0.003 0.002 170 E 0.001 0.001 0.001 0.988 0.006 0.005 171 D 0.001 0.001 0.002 0.977 0.006 0.015 172 T 0.001 0.001 0.001 0.989 0.002 0.007 173 D 0.001 0.001 0.001 0.985 0.004 0.011 174 D 0.001 0.001 0.001 0.997 0.001 0.001 175 L 0.001 0.001 0.001 0.997 0.001 0.001 176 Q 0.001 0.001 0.001 0.999 0.001 0.001 177 I 0.001 0.001 0.001 0.999 0.001 0.001 178 Q 0.001 0.001 0.001 0.999 0.001 0.001 179 L 0.001 0.001 0.001 0.998 0.001 0.001 180 R 0.001 0.001 0.001 0.996 0.002 0.001 181 R 0.001 0.001 0.001 0.992 0.004 0.002 182 Q 0.001 0.001 0.002 0.986 0.007 0.005 183 L 0.001 0.001 0.005 0.966 0.014 0.014 184 F 0.003 0.002 0.017 0.847 0.066 0.065 185 A 0.005 0.003 0.024 0.734 0.120 0.115 186 L 0.008 0.005 0.042 0.551 0.219 0.175 187 E 0.008 0.005 0.135 0.485 0.283 0.084 188 S 0.008 0.004 0.170 0.343 0.368 0.107 189 E 0.004 0.006 0.123 0.303 0.389 0.175 190 L 0.005 0.010 0.020 0.226 0.319 0.420 191 N 0.001 0.002 0.002 0.068 0.088 0.839 192 P 0.001 0.001 0.007 0.955 0.015 0.023 193 V 0.001 0.001 0.005 0.981 0.009 0.004 194 D 0.001 0.001 0.006 0.983 0.006 0.003 195 V 0.001 0.001 0.002 0.994 0.002 0.001 196 M 0.001 0.001 0.001 0.996 0.001 0.001 197 F 0.001 0.001 0.001 0.995 0.001 0.001 198 L 0.001 0.001 0.001 0.996 0.001 0.002 199 Y 0.001 0.001 0.001 0.995 0.001 0.002 200 K 0.001 0.001 0.003 0.987 0.004 0.006 201 T 0.001 0.001 0.003 0.990 0.003 0.003 202 I 0.001 0.001 0.003 0.982 0.005 0.008 203 E 0.001 0.001 0.005 0.971 0.009 0.014 204 W 0.001 0.001 0.005 0.968 0.009 0.017 205 V 0.001 0.001 0.002 0.989 0.003 0.005 206 G 0.001 0.001 0.004 0.984 0.007 0.005 207 G 0.001 0.001 0.004 0.967 0.017 0.011 208 L 0.001 0.001 0.004 0.976 0.010 0.010 209 A 0.001 0.001 0.004 0.977 0.011 0.008 210 D 0.001 0.001 0.005 0.960 0.020 0.015 211 L 0.001 0.001 0.007 0.957 0.017 0.018 212 A 0.001 0.001 0.007 0.930 0.032 0.029 213 E 0.001 0.001 0.006 0.925 0.024 0.044 214 R 0.001 0.001 0.005 0.917 0.024 0.052 215 V 0.001 0.001 0.004 0.957 0.011 0.027 216 G 0.001 0.001 0.001 0.990 0.004 0.005 217 S 0.001 0.001 0.002 0.987 0.006 0.005 218 R 0.001 0.001 0.002 0.987 0.005 0.006 219 L 0.001 0.001 0.002 0.988 0.005 0.003 220 E 0.003 0.001 0.003 0.986 0.004 0.003 221 L 0.005 0.001 0.003 0.983 0.004 0.004 222 M 0.012 0.001 0.005 0.962 0.007 0.014 223 L 0.051 0.005 0.006 0.902 0.009 0.027 224 A 0.117 0.008 0.008 0.692 0.027 0.148 225 R 0.084 0.009 0.006 0.432 0.036 0.433 226 V 0.002 0.001 0.001 0.010 0.010 0.977