# List of top-scoring protein chains for T0365.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sumB 235 1.47e-05 a.7.12.1 106025 1t72A 227 7.43e-03 1xwmA 217 7.48e-01 1vljA 407 1.43e+00 e.22.1.2 108832 2eshA 118 2.22e+00 2dc3A 193 3.84e+00 1hx1B 114 4.30e+00 1hx1B a.7.7.1 61350 1b5pA 385 4.78e+00 c.67.1.1 90403 1b5oA 385 4.79e+00 c.67.1.1 90401 5bj3A 385 4.79e+00 c.67.1.1 100871 5bj4A 385 4.80e+00 c.67.1.1 100875 1bjwA 382 5.65e+00 1bjwA c.67.1.1 34349 1bkgA 385 5.76e+00 1bjwA c.67.1.1 34351 2c07A 285 6.51e+00 1uzrA 296 6.60e+00 a.25.1.2 108178 1urvA 190 6.87e+00 1sd4A 126 7.77e+00 a.4.5.39 105428 1j31A 262 8.92e+00 d.160.1.2 90808 1eerA 166 9.19e+00 1eerA a.26.1.2 16846 1cn4C 166 9.50e+00 1eerA a.26.1.2 16847 1j58A 385 1.22e+01 b.82.1.2 71531 1ithA 141 1.28e+01 1ithA a.1.1.2 15623 1lpbB 449 1.39e+01 1gpl b.12.1.2,c.69.1.19 23643,34791 1z72A 225 1.56e+01 1wr0A 81 1.57e+01 1ue8A 367 1.58e+01 a.104.1.1 107781 2f5xA 312 1.59e+01 2a6bA 234 1.59e+01 1z41A 338 1.62e+01 1hf8A 289 1.69e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 1ofcX 304 1.73e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1xqrA 296 1.78e+01 1ka2A 499 1.97e+01 d.92.1.5 77305 1k6xA 352 2.09e+01 c.2.1.2 68238 1xgkA 352 2.09e+01 2gh1A 301 2.12e+01 1xqsA 280 2.16e+01 1gxiE 73 2.27e+01 b.34.4.2 83373 2cg4A 152 2.40e+01 1qi1A 475 2.65e+01 1euhA c.82.1.1 35381 2cptA 117 2.94e+01 2azeB 106 3.31e+01 1l4aA 80 3.45e+01 h.1.15.1 73559 1qruA 553 3.53e+01 1gtrA b.53.1.2,c.26.1.1 26946,31585 1qrsA 553 3.55e+01 1gtrA b.53.1.2,c.26.1.1 26941,31580 1qrtA 553 3.57e+01 1gtrA b.53.1.2,c.26.1.1 26943,31582 1nylA 539 3.75e+01 b.53.1.2,c.26.1.1 80741,80742 1euyA 548 3.78e+01 1gtrA b.53.1.2,c.26.1.1 26945,31584 1qtqA 553 3.79e+01 1gtrA b.53.1.2,c.26.1.1 26940,31579 1o0cA 554 3.79e+01 b.53.1.2,c.26.1.1 86529,86530 1s9cA 298 4.10e+01 1qpdA 279 4.15e+01 1fmk d.144.1.7 41687 1h6xA 170 4.38e+01 b.18.1.7 70903 1b00A 127 4.43e+01 3chy c.23.1.1 31122 1zesA 125 4.50e+01 1dyoA 160 4.76e+01 1dyoA b.18.1.7 23771 1n81A 186 4.90e+01 a.185.1.1 85388 1pse 69 5.04e+01 1pse b.34.4.2 24595 1xuvA 178 5.10e+01 1b9hA 388 5.19e+01 1b9hA c.67.1.4 34488 1b9iA 388 5.22e+01 1b9hA c.67.1.4 34489 1jykA 254 5.30e+01 c.68.1.13 67458 1t0iA 191 5.41e+01 c.23.5.4 106209 1fx1 148 5.43e+01 1rcf c.23.5.1 31169 1uuhA 159 5.44e+01 d.169.1.4 100008 2esdA 475 5.88e+01 2fvoA 333 6.01e+01 1q1hA 110 6.01e+01 a.4.5.41 95580 1fywA 149 6.03e+01 1fyvA c.23.2.1 31129 1fyxA 149 6.06e+01 1fyvA c.23.2.1 31128 1mblA 256 6.16e+01 1btl e.3.1.1 42723 1euhA 475 6.17e+01 1euhA c.82.1.1 35369 1rq0A 342 6.33e+01 e.38.1.1 105044 1z8kA 193 6.39e+01 2f51A 118 6.58e+01 1khmA 89 6.97e+01 1dt4A d.51.1.1 38809 1o77A 146 7.27e+01 c.23.2.1 81125 1z8mA 88 7.31e+01 1jndA 420 7.35e+01 c.1.8.5,d.26.3.1 71757,71758 1vctA 205 7.37e+01 2av5A 120 7.52e+01 1j1vA 94 7.82e+01 a.4.12.2 83981 1y9jA 159 8.05e+01 1gqeA 365 8.10e+01 e.38.1.1 70351 1ml5Z 365 8.10e+01 i.1.1.1 79280 2bz6H 254 8.43e+01 1keaA 221 8.46e+01 a.96.1.2 68491 1o4yA 288 8.53e+01 b.29.1.2 92473 1jb0E 75 8.65e+01 1pse b.34.4.2 62824 1vluA 468 8.90e+01 c.82.1.1 108864 1ylmA 144 8.98e+01