# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sumB 235 1.20e-06 a.7.12.1 106025 1xwmA 217 3.52e-03 1vctA 205 8.51e-02 1vljA 407 2.75e-01 e.22.1.2 108832 1eumA 165 3.87e-01 1eumA a.25.1.1 59507 1o5hA 214 6.80e-01 a.191.1.1 92497 1hx1B 114 7.44e-01 1hx1B a.7.7.1 61350 1wcrA 103 9.19e-01 1cn4C 166 9.43e-01 1eerA a.26.1.2 16847 1eerA 166 1.06e+00 1eerA a.26.1.2 16846 1buyA 166 1.46e+00 1eerA a.26.1.2 16848 1j1vA 94 2.64e+00 a.4.12.2 83981 1i6zA 135 3.52e+00 a.7.7.1 61861 1y8aA 332 4.18e+00 1gqeA 365 4.83e+00 e.38.1.1 70351 1sd4A 126 5.19e+00 a.4.5.39 105428 1hw1A 239 5.37e+00 1e2xA a.4.5.6,a.78.1.1 16111,18441 1n81A 186 6.74e+00 a.185.1.1 85388 1ithA 141 7.05e+00 1ithA a.1.1.2 15623 1tjoA 182 7.20e+00 2dbnA 461 7.67e+00 1elkA 157 7.88e+00 1dvpA a.118.9.2 19217 1a52A 258 8.08e+00 3erdA a.123.1.1 19296 1jadA 251 8.86e+00 h.4.10.1 66461 1oq9A 363 8.96e+00 a.25.1.2 87257 1cpt 412 9.14e+00 1cpt a.104.1.1 18968 1o5kA 306 9.33e+00 c.1.10.1 92504 1sig 339 9.74e+00 1sig a.177.1.1 19068 1wqgA 185 1.01e+01 1mojA 182 1.01e+01 a.25.1.1 91367 1ofcX 304 1.01e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1z72A 225 1.28e+01 1io1A 398 1.36e+01 1io1A e.32.1.1 62611 1ev7A 317 1.45e+01 1ev7B c.52.1.9 33315 1ew3A 159 1.61e+01 1mup b.60.1.1 27114 1bbhA 131 1.62e+01 1bbhA a.24.3.2 16546 1afrA 345 1.69e+01 1afrA a.25.1.2 16805 1e2xA 243 1.71e+01 1e2xA a.4.5.6,a.78.1.1 16113,18443 2btzA 394 1.73e+01 1tzvA 142 1.75e+01 a.79.1.1 107526 1qqeA 292 1.75e+01 1qqeA a.118.8.1 19210 1xbiA 120 1.79e+01 1sr2A 116 1.86e+01 1qghA 156 1.86e+01 1qghA a.25.1.1 16728 1qoyA 318 1.87e+01 1qoyA h.4.4.1 45788 1sr9A 644 1.95e+01 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 1iawA 317 1.95e+01 c.52.1.9 62126 2azeB 106 2.01e+01 1z7mA 344 2.19e+01 1rv3A 483 2.23e+01 c.67.1.4 105101 1qpcA 279 2.23e+01 1fgkA d.144.1.7 41685 1ev7B 317 2.23e+01 1ev7B c.52.1.9 33316 1n7sA 63 2.24e+01 h.1.15.1 80271 1vkeA 133 2.36e+01 a.152.1.2 108650 2etdA 171 2.37e+01 1orjA 130 2.38e+01 a.24.19.1 93456 1kezA 300 2.38e+01 c.69.1.22 68546 1tv8A 340 2.41e+01 c.1.28.3 107352 1qkmA 255 2.42e+01 3erdA a.123.1.1 19309 1xpcA 248 2.44e+01 1ir6A 424 2.51e+01 c.107.1.2 71342 3lck 271 2.55e+01 1fmk d.144.1.7 41686 2gyqA 175 2.56e+01 2fupA 168 2.58e+01 1p4oA 322 2.65e+01 d.144.1.7 87775 1wrdA 103 2.85e+01 1sdsA 117 2.85e+01 d.79.3.1 105439 1urvA 190 2.88e+01 1ut0A 190 2.88e+01 a.1.1.2 108012 1elrA 131 2.94e+01 1a17 a.118.8.1 19209 1gm6A 175 2.99e+01 b.60.1.1 70272 1yrbA 262 3.09e+01 1wixA 164 3.13e+01 4blmA 265 3.16e+01 1btl e.3.1.1 42721 1ymtA 246 3.19e+01 1l2iA 261 3.20e+01 a.123.1.1 73503 1y8oA 419 3.24e+01 1wdaA 670 3.29e+01 b.2.9.1,b.6.1.6,d.126.1.5 109243,109244,109245 2bduA 297 3.32e+01 2gh1A 301 3.33e+01 1u00A 227 3.43e+01 1jqhA 308 3.49e+01 d.144.1.7 71793 1rdfA 267 3.51e+01 c.108.1.3 104884 1tqgA 105 3.55e+01 a.24.10.3 107224 1ka2A 499 3.55e+01 d.92.1.5 77305 1ffyA 917 3.57e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1qu2A 917 3.57e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16925,26890,31592 1lq7A 67 3.57e+01 k.9.1.1 74183 1sfcE 96 3.58e+01 1sfcE h.1.15.1 45647 1ihoA 283 3.58e+01 1ihoA c.26.1.4 62390 3ertA 261 3.63e+01 3erdA a.123.1.1 19292 1i5nA 146 3.70e+01 1i5nA a.24.10.3 61805 2c6cA 707 3.73e+01 2cy7A 396 3.73e+01 1kfd 605 3.74e+01 1xwl c.55.3.5,e.8.1.1 33694,42987 1zjcA 418 3.86e+01 1g6uA 48 3.89e+01 1g6uA k.9.1.1 46425 2dexX 671 3.92e+01 1fmk 452 3.93e+01 1fmk b.34.2.1,d.93.1.1,d.144.1.7 24511,40436,41690 1csyA 112 3.96e+01 1lckA d.93.1.1 40519 1db2A 377 4.06e+01 1sek e.1.1.1 42672 1ntyA 311 4.08e+01 a.87.1.1,b.55.1.1 103873,103874 1e2aA 105 4.15e+01 1e2aA a.7.2.1 16322 1t5oA 351 4.22e+01 c.124.1.5 106459 1f32A 149 4.24e+01 1f32A d.62.1.1 39539 2e2aA 105 4.35e+01 a.7.2.1 88499 1q1fA 151 4.41e+01 a.1.1.2 104476 1rcwA 231 4.45e+01 a.132.1.4 97299 1bp7A 152 4.51e+01 1bp7A d.95.2.1 40568 2choA 716 4.60e+01 3erdA 261 4.65e+01 3erdA a.123.1.1 19293 1wzuA 300 4.73e+01 1zbpA 273 4.76e+01 2gdnA 267 4.81e+01 1vj7A 393 4.85e+01 a.211.1.1,d.218.1.8 100801,100802 1zndA 174 4.90e+01 1j31A 262 4.96e+01 d.160.1.2 90808 1fezA 256 4.97e+01 1fezA c.108.1.3 43343 2a3nA 355 5.06e+01 2ftuA 118 5.08e+01 1s12A 94 5.10e+01 1xv5A 401 5.11e+01 1g9zA 152 5.13e+01 1bp7A d.95.2.1 60408 1i2sA 282 5.20e+01 e.3.1.1 71104 1k47A 337 5.28e+01 d.14.1.5,d.58.26.4 72040,72041 1uujA 88 5.33e+01 a.221.1.1 108046 1qy1A 174 5.33e+01 b.60.1.1 96568 1uw4B 248 5.47e+01 a.118.1.14 100072 1e85A 127 5.53e+01 1bbhA a.24.3.2 16549 1hwwA 1015 5.55e+01 a.8.3.1,b.30.5.6,c.6.2.1 83067,83068,83069 2c07A 285 5.55e+01 1jekB 36 5.56e+01 1jekB 1usmA 80 5.58e+01 d.74.1.1 99876 1s9kD 53 5.62e+01 1sfcA 96 5.72e+01 1sfcA h.1.15.1 45643 1xuvA 178 5.77e+01 1lxjA 104 6.06e+01 d.58.48.1 84736 2dbgA 103 6.11e+01 1ppjA 446 6.14e+01 d.185.1.1,d.185.1.1 104252,104253 1sedA 117 6.17e+01 a.219.1.1 105449 1df3A 162 6.23e+01 1mup b.60.1.1 27134 2fcjA 119 6.28e+01 1wleA 501 6.31e+01 1u59A 287 6.33e+01 d.144.1.7 107681 1jv4A 162 6.34e+01 b.60.1.1 67343 1xezA 721 6.34e+01 2dh4A 340 6.40e+01 1cgo 127 6.41e+01 1cpq a.24.3.2 16550 2bk9A 153 6.43e+01 1a02F 56 6.43e+01 1a02F h.1.3.1 45534 1x42A 232 6.46e+01 2f6mB 109 6.48e+01 1ep3A 311 6.64e+01 2dorA c.1.4.1 28597 2hmzA 113 6.69e+01 2mhr a.24.4.1 16564 1htyA 1015 6.79e+01 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1b9hA 388 6.92e+01 1b9hA c.67.1.4 34488 1gpb 842 6.95e+01 1a8i c.87.1.4 35478 1inzA 148 6.98e+01 1eduA a.118.9.1 62610 1hxkA 1015 7.05e+01 a.8.3.1,b.30.5.6,c.6.2.1 83070,83071,83072 1dgcA 62 7.16e+01 2dgcA h.1.3.1 45506 1a1w 91 7.17e+01 1a1z a.77.1.4 18425 1eemA 241 7.19e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 2dgcA 63 7.22e+01 2dgcA h.1.3.1 45497 1ej5A 107 7.31e+01 1ej5A a.68.1.1 18268 1aoy 78 7.35e+01 1aoy a.4.5.3 16087 1na3A 91 7.36e+01 k.38.1.1 85481 1x46A 150 7.42e+01 1dd5A 185 7.46e+01 1dd5A d.67.3.1 39564 1i05A 180 7.49e+01 1mup b.60.1.1 27130 2hmqA 113 7.49e+01 2mhr a.24.4.1 16568 1h5uA 842 7.67e+01 1a8i c.87.1.4 60655 1a6r 471 7.68e+01 3gcb d.3.1.1 37033 1be3A 446 7.71e+01 1be3A d.185.1.1,d.185.1.1 58950,58951 1umnA 165 7.80e+01 a.25.1.1 99607 1b6q 63 7.80e+01 1nkd a.30.1.1 16977 1c8kA 842 7.88e+01 1a8i c.87.1.4 35491 1gcb 454 7.95e+01 3gcb d.3.1.1 37034 1i06A 180 7.99e+01 1mup b.60.1.1 27131 2avpA 70 8.06e+01 1sflA 238 8.10e+01 1l0lA 446 8.27e+01 d.185.1.1,d.185.1.1 84482,84483 2esbA 188 8.33e+01 1l4aD 87 8.44e+01 h.1.15.1 73562 1m0uA 249 8.48e+01 a.45.1.1,c.47.1.5 78359,78360 2chnA 716 8.54e+01 1go4E 100 8.70e+01 h.1.22.1 70296 1gakA 141 8.72e+01 1gakA a.19.1.1 16415