# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sumB 235 7.40e-05 a.7.12.1 106025 1xwmA 217 5.86e-03 1vctA 205 4.54e-01 1xqsA 280 5.91e-01 1xqrA 296 6.66e-01 1a8h 500 7.50e-01 1a8h a.27.1.1,c.26.1.1 16922,31589 1ofcX 304 8.50e-01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 2dc3A 193 1.32e+00 1urvA 190 1.51e+00 1ut0A 190 1.51e+00 a.1.1.2 108012 1keaA 221 1.71e+00 a.96.1.2 68491 1jk0A 419 1.78e+00 a.25.1.2 63142 1n81A 186 2.33e+00 a.185.1.1 85388 1wkbA 810 2.76e+00 1vj7A 393 3.27e+00 a.211.1.1,d.218.1.8 100801,100802 1woyA 500 3.62e+00 1vljA 407 4.06e+00 e.22.1.2 108832 2ligA 164 5.65e+00 1vls a.24.2.1 16530 1np3A 338 7.10e+00 a.100.1.2,c.2.1.6 85946,85947 1nc5A 373 7.13e+00 a.102.1.6 85548 2b05A 246 7.39e+00 1tffA 234 7.55e+00 d.3.1.11 106854 1brd 248 7.94e+00 1c3wA f.13.1.1 43404 1us6A 102 7.99e+00 a.2.13.1 107999 2c6cA 707 8.11e+00 1t33A 224 8.13e+00 a.4.1.9,a.121.1.1 106295,106296 1s4bP 674 8.63e+00 d.92.1.5 105252 2db0A 253 8.96e+00 1hx1B 114 9.33e+00 1hx1B a.7.7.1 61350 1orjA 130 9.73e+00 a.24.19.1 93456 1vls 146 1.01e+01 1vls a.24.2.1 16532 1i50A 1733 1.01e+01 e.29.1.2 61754 1ka2A 499 1.03e+01 d.92.1.5 77305 1twfA 1733 1.03e+01 1ithA 141 1.05e+01 1ithA a.1.1.2 15623 2br9A 234 1.07e+01 1z1lA 345 1.08e+01 1kgnA 329 1.12e+01 a.25.1.2 68584 2ah6A 208 1.15e+01 1oq9A 363 1.16e+01 a.25.1.2 87257 1eumA 165 1.19e+01 1eumA a.25.1.1 59507 2abk 211 1.25e+01 2abk a.96.1.1 18743 1z72A 225 1.30e+01 2fq4A 192 1.31e+01 1cojA 212 1.34e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1rfyA 102 1.43e+01 1ouvA 273 1.46e+01 a.118.18.1 93570 1afrA 345 1.51e+01 1afrA a.25.1.2 16805 1j1vA 94 1.57e+01 a.4.12.2 83981 2es4D 332 1.63e+01 1ku1A 230 1.64e+01 a.118.3.1 72996 1i1iP 681 1.67e+01 1i1iP d.92.1.5 40297 1sig 339 1.81e+01 1sig a.177.1.1 19068 1k6iA 352 1.85e+01 c.2.1.2 68223 1k6xA 352 1.90e+01 c.2.1.2 68238 1jq0A 84 2.03e+01 h.3.2.1 71786 1x0vA 354 2.04e+01 1xgkA 352 2.06e+01 2ethA 154 2.12e+01 1pk5A 248 2.14e+01 a.123.1.1 88139 1f44A 324 2.28e+01 a.60.9.1,d.163.1.1 64982,64983 2f6hX 419 2.31e+01 1wqgA 185 2.31e+01 1r9dA 787 2.33e+01 c.7.1.1 104865 1sd4A 126 2.45e+01 a.4.5.39 105428 2g38A 99 2.46e+01 1wcrA 103 2.49e+01 1t5oA 351 2.51e+01 c.124.1.5 106459 1o5hA 214 2.51e+01 a.191.1.1 92497 1nr6A 473 2.54e+01 a.104.1.1 92085 1l2iA 261 2.58e+01 a.123.1.1 73503 1dowA 205 2.83e+01 1dovA a.24.9.1 16626 1iqcA 308 2.84e+01 a.3.1.5,a.3.1.5 66266,66267 1mroA 548 2.84e+01 1mroA a.89.1.1,d.58.31.2 18525,39443 1hbnA 549 2.84e+01 1mroA a.89.1.1,d.58.31.2 60898,60899 1z6aA 500 2.85e+01 1zgmA 248 2.88e+01 2fnoA 248 2.88e+01 1yozA 116 2.90e+01 3crxA 343 2.92e+01 4crxA a.60.9.1,d.163.1.1 18101,42161 2fupA 168 3.11e+01 1kbuA 349 3.15e+01 a.60.9.1,d.163.1.1 72284,72285 1r2fA 319 3.27e+01 1r2fA a.25.1.2 16800 1ymtA 246 3.29e+01 1vgmA 378 3.30e+01 1xo0A 324 3.32e+01 2choA 716 3.35e+01 1cn4C 166 3.37e+01 1eerA a.26.1.2 16847 2erbA 125 3.44e+01 1g2cL 43 3.49e+01 1g2cL 2chnA 716 3.54e+01 1aijM 307 3.59e+01 6prcM f.26.1.1 43462 1c3wA 222 3.63e+01 1c3wA f.13.1.1 43405 1vjlA 164 3.70e+01 d.257.1.1 100822 1z5hA 780 3.73e+01 1o7xB 377 3.76e+01 a.103.1.1 81172 1y8aA 332 3.78e+01 1bcfA 158 3.82e+01 1bcfA a.25.1.1 16648 1aijS 301 3.82e+01 6prcM f.26.1.1 43465 1sly 618 3.89e+01 1qsaA a.118.5.1,d.2.1.6 19184,36990 1i6zA 135 3.90e+01 a.7.7.1 61861 1bpe 335 3.90e+01 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 18076,75815,75816 1wphA 201 3.95e+01 1dxrM 323 3.95e+01 6prcM f.26.1.1 43432 2fpqA 444 3.99e+01 1g2cB 43 4.03e+01 1g2cB 4crxA 322 4.05e+01 4crxA a.60.9.1,d.163.1.1 18095,42155 2fcjA 119 4.21e+01 1h2kA 349 4.23e+01 b.82.2.6 76572 2cbiA 594 4.45e+01 1ciy 590 4.49e+01 1ciy b.18.1.3,b.77.2.1,f.1.3.1 23720,27977,43392 1po5A 476 4.55e+01 a.104.1.1 94963 1sgmA 191 4.56e+01 a.4.1.9,a.121.1.1 105537,105538 1m98A 317 4.67e+01 a.175.1.1,d.17.4.6 78866,78867 1bbhA 131 4.75e+01 1bbhA a.24.3.2 16546 1khoA 370 4.76e+01 a.124.1.1,b.12.1.3 72489,72490 1l8qA 324 4.79e+01 a.4.12.2,c.37.1.20 77809,77810 1wrdA 103 4.94e+01 1r71A 178 5.16e+01 a.4.14.1 104823 1wwpA 119 5.19e+01 1ornA 226 5.23e+01 a.96.1.1 87342 1fpzA 212 5.28e+01 1fpzA c.45.1.1 59976 1opjA 293 5.33e+01 d.144.1.7 87230 1wovA 250 5.34e+01 1f5qB 252 5.37e+01 1f5qB a.74.1.1,a.74.1.1 18362,18363 1mzeA 351 5.38e+01 b.82.2.6 79694 1xlyA 234 5.42e+01 1qbqA 333 5.43e+01 1ft1A a.118.6.1 19187 1irxA 523 5.47e+01 a.97.1.2,c.26.1.1 71378,71379 1rzhM 307 5.57e+01 f.26.1.1 98165 1elkA 157 5.64e+01 1dvpA a.118.9.2 19217 1cuk 203 5.86e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1keyA 235 5.92e+01 a.118.16.1 72389 1m0kA 262 5.93e+01 f.13.1.1 78344 1n7oA 721 5.93e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1eyyA 510 5.97e+01 1eyyA c.82.1.1 35389 1mkiA 330 6.00e+01 e.3.1.2 84994 1tqgA 105 6.05e+01 a.24.10.3 107224 1r9jA 673 6.09e+01 1gtmA 419 6.11e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1nom 248 6.13e+01 1bpyA a.60.12.1,d.218.1.2 75929,75930 1vgoA 253 6.15e+01 1ez0A 510 6.24e+01 1eyyA c.82.1.1 35385 1l4aD 87 6.27e+01 h.1.15.1 73562 1ialA 453 6.39e+01 1bk5A a.118.1.1 19116 1qv9A 283 6.53e+01 c.127.1.1 96356 1eguA 731 6.54e+01 1eguA a.102.3.2,b.24.1.1,b.30.5.2 18850,23899,24423 1gw5A 621 6.74e+01 a.118.1.10 70629 2cfuA 658 6.82e+01 1crxA 322 6.86e+01 4crxA a.60.9.1,d.163.1.1 18097,42157 1o17A 345 6.89e+01 a.46.2.1,c.27.1.1 80765,80766 1f4tA 368 6.93e+01 1f4tA a.104.1.1 18973 4blmA 265 6.96e+01 1btl e.3.1.1 42721 1rfzA 168 7.00e+01 a.195.1.1 97411 1qdbA 473 7.11e+01 1qdbA a.138.1.3 19688 1txdA 385 7.12e+01 a.87.1.1,b.55.1.1 107422,107423 1itwA 741 7.17e+01 c.77.1.2 76793 1o9rA 162 7.21e+01 a.25.1.1 86706 1wleA 501 7.26e+01 1dovA 181 7.36e+01 1dovA a.24.9.1 16627 2gmyA 153 7.48e+01 1i2sA 282 7.48e+01 e.3.1.1 71104 1pgjA 478 7.49e+01 2pgd a.100.1.1,c.2.1.6 18783,30195 1sfcE 96 7.56e+01 1sfcE h.1.15.1 45647 1clc 639 7.60e+01 1clc a.102.1.2,b.1.18.2 18835,21872 1o26A 232 7.66e+01 d.207.1.1 86566 6prcM 323 7.67e+01 6prcM f.26.1.1 43435 1aisB 200 7.73e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1a76 326 7.84e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1gmjA 84 7.85e+01 h.4.8.1 65310 2a2mA 258 7.87e+01 2aexA 346 7.93e+01 1in6A 334 7.96e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1ylmA 144 7.99e+01 1in4A 334 8.01e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1uby 367 8.06e+01 1uby a.128.1.1 19435 1k1gA 131 8.11e+01 d.51.1.1 68015 1qsaA 618 8.16e+01 1qsaA a.118.5.1,d.2.1.6 19182,36988 1lvl 458 8.17e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1dt6A 473 8.18e+01 1dt6A a.104.1.1 18977 1kw4A 89 8.54e+01 a.60.1.2 73077 1n4kA 381 8.54e+01 a.118.22.1,b.42.6.1 79992,79993 1yg2A 179 8.60e+01 1xk4A 93 8.78e+01 2occA 514 8.80e+01 2occA f.24.1.1 43518 1q06A 135 8.86e+01 a.6.1.3 95493 1kq4A 232 8.86e+01 d.207.1.1 68791