# TARGET T0365 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0365.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 170 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.003 0.001 0.001 0.005 0.031 0.960 2 P 0.041 0.013 0.005 0.034 0.083 0.824 3 V 0.040 0.010 0.108 0.278 0.192 0.372 4 N 0.070 0.009 0.251 0.259 0.227 0.184 5 S 0.091 0.005 0.287 0.321 0.187 0.110 6 I 0.073 0.014 0.143 0.421 0.186 0.163 7 L 0.047 0.011 0.071 0.507 0.201 0.163 8 G 0.042 0.009 0.057 0.271 0.288 0.333 9 V 0.045 0.021 0.073 0.249 0.274 0.338 10 F 0.056 0.026 0.075 0.181 0.343 0.320 11 A 0.038 0.018 0.055 0.184 0.376 0.330 12 K 0.033 0.018 0.039 0.196 0.310 0.404 13 S 0.020 0.013 0.019 0.060 0.392 0.496 14 P 0.008 0.006 0.041 0.197 0.351 0.397 15 I 0.012 0.010 0.035 0.463 0.205 0.275 16 K 0.007 0.010 0.054 0.607 0.159 0.162 17 P 0.004 0.004 0.077 0.670 0.145 0.100 18 L 0.001 0.001 0.095 0.861 0.031 0.013 19 Q 0.001 0.001 0.049 0.920 0.024 0.007 20 E 0.001 0.001 0.049 0.917 0.025 0.008 21 H 0.001 0.001 0.023 0.959 0.011 0.007 22 M 0.001 0.001 0.007 0.983 0.007 0.003 23 D 0.001 0.001 0.005 0.988 0.005 0.002 24 K 0.001 0.001 0.005 0.986 0.006 0.003 25 V 0.001 0.001 0.003 0.991 0.004 0.002 26 Y 0.001 0.001 0.003 0.993 0.003 0.001 27 D 0.001 0.001 0.002 0.995 0.002 0.001 28 C 0.001 0.001 0.003 0.995 0.002 0.001 29 A 0.001 0.001 0.004 0.994 0.001 0.001 30 S 0.001 0.001 0.009 0.988 0.002 0.001 31 L 0.001 0.001 0.012 0.982 0.004 0.002 32 L 0.001 0.001 0.006 0.987 0.003 0.004 33 V 0.001 0.001 0.020 0.971 0.005 0.003 34 P 0.001 0.001 0.017 0.972 0.007 0.003 35 F 0.001 0.001 0.015 0.976 0.005 0.003 36 F 0.001 0.001 0.007 0.981 0.006 0.004 37 E 0.001 0.001 0.010 0.978 0.008 0.002 38 A 0.001 0.001 0.007 0.977 0.012 0.003 39 T 0.001 0.001 0.007 0.959 0.024 0.009 40 I 0.001 0.002 0.013 0.894 0.065 0.026 41 T 0.001 0.001 0.025 0.688 0.176 0.108 42 G 0.001 0.002 0.014 0.082 0.345 0.556 43 N 0.002 0.004 0.007 0.023 0.284 0.679 44 W 0.003 0.003 0.074 0.501 0.232 0.186 45 D 0.005 0.003 0.059 0.674 0.147 0.111 46 D 0.002 0.001 0.031 0.882 0.056 0.027 47 A 0.001 0.001 0.009 0.972 0.010 0.008 48 V 0.001 0.001 0.006 0.985 0.005 0.003 49 Q 0.001 0.001 0.010 0.971 0.012 0.006 50 I 0.001 0.001 0.006 0.975 0.009 0.010 51 R 0.001 0.001 0.004 0.985 0.006 0.005 52 K 0.001 0.001 0.004 0.984 0.007 0.005 53 Q 0.001 0.001 0.003 0.984 0.005 0.007 54 I 0.001 0.001 0.002 0.984 0.007 0.006 55 S 0.001 0.001 0.003 0.984 0.007 0.005 56 L 0.001 0.001 0.004 0.983 0.008 0.004 57 A 0.001 0.001 0.006 0.968 0.013 0.012 58 E 0.001 0.001 0.008 0.973 0.013 0.005 59 K 0.001 0.001 0.009 0.966 0.015 0.009 60 Q 0.001 0.001 0.010 0.950 0.014 0.026 61 G 0.001 0.001 0.018 0.898 0.036 0.045 62 D 0.001 0.001 0.013 0.944 0.025 0.018 63 S 0.001 0.001 0.009 0.974 0.009 0.006 64 L 0.001 0.001 0.004 0.988 0.005 0.003 65 K 0.001 0.001 0.003 0.987 0.006 0.002 66 R 0.003 0.001 0.003 0.982 0.009 0.003 67 E 0.006 0.001 0.005 0.970 0.015 0.004 68 I 0.005 0.001 0.009 0.963 0.017 0.005 69 R 0.007 0.001 0.017 0.952 0.021 0.002 70 L 0.013 0.001 0.015 0.929 0.032 0.010 71 T 0.014 0.005 0.016 0.708 0.085 0.172 72 L 0.020 0.027 0.025 0.158 0.359 0.411 73 P 0.026 0.007 0.079 0.058 0.606 0.223 74 S 0.031 0.004 0.103 0.049 0.661 0.151 75 G 0.098 0.010 0.073 0.038 0.582 0.199 76 L 0.339 0.019 0.021 0.030 0.243 0.346 77 F 0.666 0.048 0.009 0.011 0.062 0.205 78 M 0.627 0.021 0.006 0.007 0.077 0.262 79 P 0.292 0.017 0.011 0.013 0.145 0.521 80 V 0.093 0.021 0.014 0.011 0.162 0.698 81 E 0.047 0.013 0.014 0.026 0.167 0.733 82 R 0.003 0.001 0.227 0.673 0.053 0.043 83 T 0.002 0.001 0.113 0.820 0.037 0.027 84 D 0.001 0.001 0.053 0.926 0.014 0.005 85 L 0.001 0.001 0.007 0.989 0.002 0.001 86 L 0.001 0.001 0.004 0.994 0.002 0.001 87 E 0.001 0.001 0.005 0.991 0.003 0.001 88 L 0.001 0.001 0.002 0.994 0.002 0.001 89 L 0.001 0.001 0.002 0.994 0.002 0.002 90 T 0.001 0.001 0.003 0.988 0.006 0.003 91 Q 0.001 0.001 0.005 0.975 0.011 0.009 92 Q 0.001 0.001 0.010 0.949 0.025 0.016 93 D 0.001 0.001 0.017 0.951 0.025 0.007 94 K 0.001 0.001 0.016 0.960 0.018 0.005 95 I 0.001 0.001 0.006 0.987 0.005 0.003 96 A 0.001 0.001 0.003 0.990 0.004 0.003 97 N 0.001 0.001 0.005 0.984 0.008 0.003 98 K 0.001 0.001 0.008 0.967 0.018 0.006 99 A 0.001 0.001 0.010 0.969 0.015 0.005 100 K 0.001 0.001 0.016 0.964 0.016 0.003 101 D 0.002 0.001 0.017 0.948 0.023 0.010 102 I 0.001 0.001 0.013 0.947 0.017 0.022 103 S 0.002 0.001 0.013 0.918 0.041 0.026 104 G 0.011 0.001 0.021 0.829 0.096 0.043 105 R 0.061 0.001 0.014 0.827 0.055 0.041 106 V 0.126 0.004 0.009 0.777 0.044 0.039 107 I 0.182 0.004 0.013 0.720 0.037 0.044 108 G 0.196 0.003 0.023 0.630 0.052 0.097 109 R 0.162 0.004 0.034 0.466 0.076 0.258 110 Q 0.183 0.013 0.047 0.273 0.132 0.351 111 L 0.186 0.020 0.022 0.128 0.157 0.486 112 L 0.109 0.017 0.018 0.124 0.181 0.551 113 I 0.054 0.022 0.012 0.081 0.215 0.617 114 P 0.024 0.010 0.028 0.068 0.371 0.499 115 Q 0.010 0.003 0.258 0.299 0.276 0.154 116 A 0.013 0.005 0.328 0.341 0.216 0.097 117 L 0.015 0.009 0.170 0.463 0.192 0.150 118 Q 0.015 0.006 0.018 0.513 0.090 0.358 119 V 0.006 0.004 0.019 0.814 0.051 0.107 120 P 0.008 0.005 0.024 0.829 0.059 0.075 121 F 0.001 0.001 0.024 0.953 0.013 0.008 122 I 0.001 0.001 0.016 0.968 0.010 0.005 123 A 0.001 0.001 0.014 0.972 0.010 0.004 124 Y 0.001 0.001 0.006 0.987 0.004 0.003 125 L 0.001 0.001 0.001 0.995 0.002 0.001 126 Q 0.001 0.001 0.001 0.997 0.001 0.001 127 R 0.001 0.001 0.001 0.996 0.002 0.001 128 C 0.001 0.001 0.001 0.996 0.002 0.001 129 I 0.001 0.001 0.002 0.996 0.002 0.001 130 D 0.001 0.001 0.002 0.996 0.002 0.001 131 A 0.001 0.001 0.001 0.996 0.001 0.001 132 V 0.001 0.001 0.001 0.996 0.002 0.001 133 G 0.001 0.001 0.002 0.996 0.002 0.001 134 L 0.001 0.001 0.002 0.995 0.002 0.001 135 A 0.001 0.001 0.001 0.996 0.001 0.001 136 Q 0.001 0.001 0.001 0.997 0.001 0.001 137 Q 0.001 0.001 0.003 0.994 0.002 0.001 138 V 0.001 0.001 0.003 0.992 0.003 0.002 139 I 0.001 0.001 0.005 0.986 0.007 0.002 140 N 0.001 0.001 0.007 0.984 0.008 0.001 141 E 0.001 0.001 0.007 0.979 0.010 0.004 142 L 0.001 0.001 0.012 0.975 0.008 0.005 143 D 0.001 0.001 0.019 0.973 0.007 0.001 144 D 0.001 0.001 0.016 0.973 0.009 0.002 145 L 0.001 0.001 0.012 0.973 0.009 0.006 146 L 0.001 0.001 0.019 0.963 0.011 0.006 147 E 0.001 0.001 0.017 0.956 0.020 0.006 148 A 0.001 0.001 0.028 0.879 0.041 0.050 149 G 0.004 0.002 0.033 0.085 0.245 0.631 150 F 0.011 0.034 0.102 0.053 0.648 0.151 151 R 0.013 0.010 0.071 0.045 0.751 0.110 152 G 0.005 0.005 0.055 0.091 0.695 0.148 153 R 0.020 0.019 0.023 0.074 0.530 0.335 154 E 0.022 0.020 0.009 0.187 0.122 0.640 155 V 0.008 0.004 0.010 0.757 0.054 0.168 156 D 0.002 0.001 0.010 0.941 0.021 0.026 157 F 0.001 0.001 0.009 0.976 0.010 0.004 158 V 0.001 0.001 0.006 0.981 0.008 0.004 159 A 0.001 0.001 0.004 0.990 0.004 0.002 160 K 0.001 0.001 0.005 0.985 0.007 0.003 161 M 0.001 0.001 0.003 0.988 0.004 0.004 162 I 0.001 0.001 0.002 0.991 0.004 0.003 163 N 0.001 0.001 0.003 0.989 0.005 0.003 164 E 0.001 0.001 0.003 0.984 0.006 0.007 165 L 0.001 0.001 0.003 0.972 0.012 0.011 166 D 0.001 0.001 0.005 0.976 0.012 0.006 167 I 0.001 0.001 0.005 0.978 0.010 0.005 168 I 0.001 0.001 0.007 0.968 0.011 0.014 169 E 0.001 0.001 0.012 0.967 0.013 0.007 170 E 0.001 0.001 0.012 0.955 0.018 0.014 171 D 0.001 0.001 0.015 0.939 0.019 0.026 172 T 0.001 0.001 0.009 0.943 0.028 0.019 173 D 0.001 0.001 0.004 0.968 0.018 0.009 174 D 0.001 0.001 0.002 0.992 0.004 0.001 175 L 0.001 0.001 0.003 0.992 0.004 0.001 176 Q 0.001 0.001 0.002 0.993 0.003 0.001 177 I 0.001 0.001 0.001 0.994 0.003 0.001 178 Q 0.001 0.001 0.001 0.993 0.003 0.002 179 L 0.001 0.001 0.001 0.992 0.003 0.003 180 R 0.001 0.001 0.002 0.994 0.003 0.002 181 R 0.001 0.001 0.002 0.992 0.004 0.001 182 Q 0.001 0.001 0.004 0.982 0.008 0.005 183 L 0.001 0.001 0.008 0.964 0.013 0.014 184 F 0.004 0.001 0.025 0.902 0.041 0.027 185 A 0.006 0.002 0.038 0.781 0.091 0.082 186 L 0.009 0.008 0.039 0.610 0.140 0.194 187 E 0.007 0.006 0.103 0.531 0.199 0.155 188 S 0.009 0.005 0.128 0.305 0.335 0.218 189 E 0.013 0.008 0.088 0.119 0.412 0.360 190 L 0.016 0.024 0.012 0.061 0.268 0.620 191 N 0.004 0.003 0.001 0.005 0.056 0.932 192 P 0.001 0.001 0.011 0.953 0.016 0.019 193 V 0.001 0.001 0.011 0.966 0.015 0.006 194 D 0.001 0.001 0.016 0.970 0.009 0.003 195 V 0.003 0.001 0.004 0.985 0.004 0.004 196 M 0.002 0.001 0.005 0.988 0.003 0.003 197 F 0.002 0.001 0.005 0.989 0.002 0.002 198 L 0.001 0.001 0.002 0.992 0.003 0.002 199 Y 0.001 0.001 0.002 0.994 0.003 0.001 200 K 0.001 0.001 0.004 0.990 0.004 0.001 201 T 0.001 0.001 0.003 0.993 0.003 0.001 202 I 0.001 0.001 0.003 0.994 0.002 0.001 203 E 0.001 0.001 0.004 0.992 0.003 0.001 204 W 0.001 0.001 0.004 0.990 0.005 0.002 205 V 0.001 0.001 0.002 0.993 0.003 0.002 206 G 0.001 0.001 0.005 0.988 0.005 0.001 207 G 0.001 0.001 0.010 0.975 0.011 0.004 208 L 0.001 0.001 0.010 0.975 0.008 0.006 209 A 0.001 0.001 0.010 0.971 0.011 0.007 210 D 0.001 0.001 0.015 0.957 0.019 0.008 211 L 0.001 0.001 0.017 0.945 0.027 0.010 212 A 0.001 0.001 0.015 0.950 0.021 0.013 213 E 0.001 0.001 0.028 0.948 0.019 0.005 214 R 0.001 0.001 0.028 0.938 0.023 0.010 215 V 0.001 0.001 0.022 0.953 0.011 0.014 216 G 0.001 0.001 0.026 0.936 0.022 0.015 217 S 0.002 0.001 0.023 0.924 0.034 0.017 218 R 0.008 0.001 0.017 0.939 0.023 0.013 219 L 0.017 0.001 0.007 0.935 0.030 0.010 220 E 0.036 0.001 0.006 0.916 0.034 0.008 221 L 0.045 0.001 0.002 0.943 0.007 0.003 222 M 0.038 0.001 0.001 0.950 0.005 0.006 223 L 0.052 0.001 0.003 0.932 0.005 0.008 224 A 0.154 0.002 0.003 0.769 0.016 0.056 225 R 0.100 0.004 0.003 0.319 0.030 0.544 226 V 0.001 0.001 0.001 0.001 0.005 0.993