# TARGET T0365 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0365.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 170 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.002 0.001 0.001 0.001 0.001 0.001 0.996 2 P 0.020 0.023 0.003 0.035 0.003 0.008 0.908 3 V 0.032 0.009 0.054 0.418 0.058 0.104 0.325 4 N 0.040 0.004 0.122 0.406 0.083 0.152 0.193 5 S 0.047 0.005 0.183 0.479 0.062 0.069 0.155 6 I 0.038 0.010 0.103 0.650 0.039 0.062 0.098 7 L 0.026 0.008 0.142 0.494 0.045 0.201 0.084 8 G 0.016 0.005 0.105 0.278 0.080 0.410 0.107 9 V 0.040 0.017 0.133 0.248 0.133 0.189 0.242 10 F 0.051 0.050 0.083 0.153 0.213 0.129 0.322 11 A 0.024 0.014 0.084 0.117 0.105 0.437 0.219 12 K 0.013 0.008 0.076 0.109 0.181 0.394 0.218 13 S 0.012 0.015 0.019 0.034 0.308 0.056 0.556 14 P 0.010 0.021 0.033 0.100 0.135 0.251 0.449 15 I 0.011 0.011 0.045 0.421 0.114 0.131 0.267 16 K 0.008 0.003 0.024 0.720 0.133 0.019 0.093 17 P 0.006 0.006 0.019 0.869 0.017 0.018 0.063 18 L 0.001 0.001 0.006 0.974 0.002 0.009 0.008 19 Q 0.001 0.001 0.002 0.993 0.001 0.002 0.001 20 E 0.001 0.001 0.002 0.992 0.001 0.004 0.001 21 H 0.001 0.001 0.001 0.992 0.001 0.005 0.001 22 M 0.001 0.001 0.001 0.998 0.001 0.001 0.001 23 D 0.001 0.001 0.001 0.997 0.001 0.003 0.001 24 K 0.001 0.001 0.001 0.995 0.001 0.005 0.001 25 V 0.001 0.001 0.001 0.996 0.001 0.004 0.001 26 Y 0.001 0.001 0.001 0.998 0.001 0.002 0.001 27 D 0.001 0.001 0.001 0.989 0.001 0.010 0.001 28 C 0.001 0.001 0.001 0.985 0.001 0.012 0.001 29 A 0.001 0.001 0.003 0.989 0.001 0.006 0.001 30 S 0.001 0.001 0.008 0.958 0.002 0.031 0.001 31 L 0.001 0.001 0.006 0.889 0.002 0.102 0.001 32 L 0.001 0.001 0.004 0.944 0.004 0.037 0.010 33 V 0.001 0.001 0.008 0.985 0.001 0.004 0.002 34 P 0.001 0.001 0.009 0.984 0.001 0.005 0.001 35 F 0.001 0.001 0.009 0.978 0.001 0.011 0.001 36 F 0.001 0.001 0.004 0.976 0.002 0.014 0.003 37 E 0.001 0.001 0.003 0.974 0.002 0.016 0.003 38 A 0.001 0.001 0.003 0.973 0.002 0.016 0.004 39 T 0.002 0.001 0.005 0.956 0.003 0.026 0.007 40 I 0.004 0.003 0.011 0.867 0.014 0.081 0.020 41 T 0.005 0.002 0.017 0.631 0.035 0.274 0.036 42 G 0.004 0.003 0.011 0.310 0.178 0.352 0.141 43 N 0.007 0.009 0.008 0.127 0.186 0.093 0.570 44 W 0.002 0.003 0.039 0.743 0.036 0.069 0.107 45 D 0.001 0.001 0.054 0.805 0.035 0.073 0.031 46 D 0.001 0.002 0.024 0.884 0.024 0.035 0.029 47 A 0.001 0.001 0.001 0.990 0.001 0.004 0.004 48 V 0.001 0.001 0.001 0.995 0.001 0.002 0.001 49 Q 0.001 0.001 0.001 0.995 0.001 0.002 0.001 50 I 0.001 0.001 0.001 0.996 0.001 0.002 0.001 51 R 0.001 0.001 0.001 0.995 0.001 0.003 0.001 52 K 0.001 0.001 0.001 0.991 0.001 0.008 0.001 53 Q 0.001 0.001 0.001 0.987 0.001 0.011 0.002 54 I 0.001 0.001 0.001 0.989 0.001 0.005 0.004 55 S 0.001 0.001 0.001 0.992 0.001 0.005 0.001 56 L 0.001 0.001 0.001 0.985 0.001 0.012 0.001 57 A 0.001 0.001 0.002 0.980 0.001 0.014 0.003 58 E 0.001 0.001 0.005 0.971 0.003 0.015 0.004 59 K 0.001 0.001 0.011 0.920 0.007 0.056 0.005 60 Q 0.001 0.001 0.004 0.940 0.003 0.047 0.005 61 G 0.001 0.001 0.002 0.960 0.007 0.016 0.015 62 D 0.001 0.001 0.002 0.964 0.007 0.013 0.013 63 S 0.001 0.001 0.002 0.982 0.001 0.010 0.003 64 L 0.001 0.001 0.001 0.993 0.001 0.003 0.002 65 K 0.001 0.001 0.001 0.994 0.001 0.001 0.002 66 R 0.001 0.001 0.001 0.996 0.001 0.001 0.001 67 E 0.001 0.001 0.001 0.995 0.001 0.003 0.001 68 I 0.001 0.001 0.001 0.982 0.001 0.014 0.001 69 R 0.001 0.001 0.008 0.969 0.002 0.018 0.002 70 L 0.003 0.001 0.021 0.886 0.004 0.080 0.006 71 T 0.004 0.002 0.050 0.703 0.033 0.179 0.029 72 L 0.014 0.011 0.011 0.090 0.460 0.034 0.380 73 P 0.014 0.006 0.073 0.031 0.158 0.283 0.435 74 S 0.044 0.008 0.154 0.036 0.147 0.515 0.096 75 G 0.139 0.010 0.167 0.046 0.152 0.294 0.192 76 L 0.385 0.026 0.056 0.022 0.125 0.090 0.297 77 F 0.466 0.044 0.011 0.009 0.075 0.026 0.370 78 M 0.463 0.041 0.004 0.003 0.125 0.013 0.351 79 P 0.252 0.044 0.006 0.004 0.090 0.028 0.577 80 V 0.098 0.050 0.017 0.015 0.247 0.055 0.517 81 E 0.027 0.029 0.013 0.018 0.108 0.023 0.784 82 R 0.001 0.001 0.081 0.886 0.002 0.024 0.006 83 T 0.001 0.001 0.044 0.937 0.002 0.016 0.001 84 D 0.001 0.001 0.025 0.960 0.002 0.009 0.003 85 L 0.001 0.001 0.001 0.995 0.001 0.003 0.001 86 L 0.001 0.001 0.001 0.997 0.001 0.002 0.001 87 E 0.001 0.001 0.001 0.997 0.001 0.003 0.001 88 L 0.001 0.001 0.001 0.995 0.001 0.004 0.001 89 L 0.001 0.001 0.002 0.989 0.001 0.007 0.001 90 T 0.001 0.001 0.002 0.950 0.002 0.045 0.001 91 Q 0.001 0.001 0.002 0.909 0.003 0.082 0.003 92 Q 0.001 0.001 0.003 0.959 0.003 0.029 0.006 93 D 0.001 0.001 0.007 0.957 0.008 0.019 0.009 94 K 0.001 0.001 0.016 0.944 0.003 0.031 0.006 95 I 0.001 0.001 0.007 0.967 0.001 0.022 0.002 96 A 0.001 0.001 0.003 0.979 0.004 0.010 0.004 97 N 0.001 0.001 0.003 0.972 0.006 0.014 0.005 98 K 0.001 0.001 0.002 0.978 0.001 0.017 0.002 99 A 0.001 0.001 0.001 0.992 0.001 0.005 0.001 100 K 0.001 0.001 0.001 0.995 0.001 0.003 0.001 101 D 0.001 0.001 0.001 0.990 0.001 0.007 0.001 102 I 0.001 0.001 0.002 0.982 0.001 0.014 0.002 103 S 0.001 0.001 0.002 0.984 0.001 0.010 0.002 104 G 0.001 0.001 0.003 0.977 0.002 0.015 0.002 105 R 0.002 0.001 0.003 0.973 0.001 0.017 0.003 106 V 0.009 0.001 0.005 0.950 0.003 0.028 0.006 107 I 0.023 0.002 0.008 0.858 0.008 0.084 0.016 108 G 0.037 0.001 0.018 0.762 0.023 0.120 0.039 109 R 0.056 0.004 0.024 0.538 0.052 0.251 0.075 110 Q 0.083 0.007 0.036 0.277 0.078 0.329 0.190 111 L 0.132 0.012 0.025 0.122 0.142 0.107 0.460 112 L 0.120 0.026 0.022 0.076 0.099 0.139 0.518 113 I 0.044 0.016 0.004 0.020 0.125 0.014 0.777 114 P 0.021 0.007 0.013 0.014 0.025 0.014 0.907 115 Q 0.011 0.004 0.260 0.238 0.106 0.251 0.131 116 A 0.007 0.004 0.374 0.161 0.052 0.282 0.119 117 L 0.012 0.016 0.126 0.225 0.079 0.085 0.456 118 Q 0.007 0.008 0.024 0.334 0.035 0.039 0.553 119 V 0.001 0.001 0.017 0.912 0.037 0.019 0.013 120 P 0.001 0.001 0.011 0.958 0.004 0.014 0.010 121 F 0.001 0.001 0.003 0.991 0.001 0.004 0.002 122 I 0.001 0.001 0.001 0.997 0.001 0.002 0.001 123 A 0.001 0.001 0.001 0.997 0.001 0.003 0.001 124 Y 0.001 0.001 0.001 0.995 0.001 0.004 0.001 125 L 0.001 0.001 0.001 0.999 0.001 0.001 0.001 126 Q 0.001 0.001 0.001 0.998 0.001 0.002 0.001 127 R 0.001 0.001 0.001 0.997 0.001 0.003 0.001 128 C 0.001 0.001 0.001 0.998 0.001 0.002 0.001 129 I 0.001 0.001 0.001 0.999 0.001 0.001 0.001 130 D 0.001 0.001 0.001 0.998 0.001 0.002 0.001 131 A 0.001 0.001 0.001 0.997 0.001 0.003 0.001 132 V 0.001 0.001 0.001 0.998 0.001 0.002 0.001 133 G 0.001 0.001 0.001 0.994 0.001 0.005 0.001 134 L 0.001 0.001 0.001 0.989 0.001 0.010 0.001 135 A 0.001 0.001 0.001 0.995 0.001 0.003 0.001 136 Q 0.001 0.001 0.001 0.998 0.001 0.002 0.001 137 Q 0.001 0.001 0.001 0.991 0.001 0.008 0.001 138 V 0.001 0.001 0.001 0.985 0.001 0.013 0.001 139 I 0.001 0.001 0.002 0.990 0.001 0.006 0.001 140 N 0.001 0.001 0.004 0.963 0.001 0.031 0.001 141 E 0.001 0.001 0.003 0.903 0.001 0.091 0.001 142 L 0.001 0.001 0.003 0.959 0.004 0.020 0.013 143 D 0.001 0.001 0.006 0.983 0.001 0.008 0.002 144 D 0.001 0.001 0.006 0.976 0.001 0.016 0.001 145 L 0.001 0.001 0.019 0.952 0.001 0.024 0.003 146 L 0.002 0.001 0.025 0.934 0.005 0.028 0.005 147 E 0.004 0.001 0.032 0.845 0.011 0.098 0.009 148 A 0.005 0.002 0.034 0.640 0.019 0.275 0.026 149 G 0.010 0.009 0.038 0.299 0.081 0.427 0.136 150 F 0.016 0.019 0.056 0.156 0.170 0.221 0.364 151 R 0.011 0.008 0.049 0.112 0.140 0.535 0.145 152 G 0.005 0.002 0.034 0.096 0.197 0.554 0.112 153 R 0.013 0.012 0.024 0.192 0.235 0.172 0.353 154 E 0.029 0.037 0.020 0.288 0.105 0.072 0.449 155 V 0.004 0.002 0.016 0.884 0.012 0.011 0.071 156 D 0.002 0.001 0.012 0.959 0.006 0.008 0.014 157 F 0.001 0.001 0.009 0.975 0.003 0.006 0.005 158 V 0.001 0.001 0.001 0.993 0.001 0.003 0.002 159 A 0.001 0.001 0.001 0.997 0.001 0.002 0.001 160 K 0.001 0.001 0.001 0.993 0.001 0.005 0.001 161 M 0.001 0.001 0.002 0.989 0.001 0.008 0.001 162 I 0.001 0.001 0.002 0.989 0.001 0.007 0.001 163 N 0.001 0.001 0.001 0.979 0.001 0.018 0.001 164 E 0.001 0.001 0.001 0.970 0.001 0.026 0.002 165 L 0.001 0.001 0.001 0.989 0.002 0.005 0.003 166 D 0.001 0.001 0.001 0.992 0.001 0.004 0.002 167 I 0.001 0.001 0.001 0.990 0.001 0.007 0.001 168 I 0.001 0.001 0.003 0.984 0.001 0.010 0.002 169 E 0.001 0.001 0.007 0.968 0.003 0.019 0.002 170 E 0.001 0.001 0.008 0.889 0.006 0.093 0.003 171 D 0.001 0.001 0.004 0.915 0.008 0.066 0.007 172 T 0.001 0.001 0.002 0.964 0.007 0.017 0.011 173 D 0.001 0.001 0.002 0.924 0.019 0.017 0.037 174 D 0.001 0.001 0.002 0.985 0.003 0.008 0.002 175 L 0.001 0.001 0.001 0.993 0.001 0.003 0.002 176 Q 0.001 0.001 0.001 0.995 0.001 0.002 0.002 177 I 0.001 0.001 0.001 0.996 0.001 0.001 0.001 178 Q 0.001 0.001 0.001 0.997 0.001 0.002 0.001 179 L 0.001 0.001 0.001 0.994 0.001 0.004 0.002 180 R 0.001 0.001 0.001 0.996 0.001 0.002 0.002 181 R 0.001 0.001 0.001 0.996 0.001 0.002 0.001 182 Q 0.001 0.001 0.001 0.991 0.001 0.007 0.001 183 L 0.001 0.001 0.002 0.971 0.001 0.024 0.001 184 F 0.001 0.001 0.006 0.929 0.005 0.053 0.006 185 A 0.002 0.001 0.019 0.801 0.011 0.141 0.025 186 L 0.002 0.002 0.036 0.716 0.031 0.145 0.068 187 E 0.004 0.007 0.125 0.513 0.093 0.141 0.118 188 S 0.004 0.002 0.214 0.231 0.078 0.413 0.058 189 E 0.004 0.003 0.154 0.149 0.120 0.503 0.067 190 L 0.012 0.019 0.020 0.078 0.456 0.085 0.330 191 N 0.005 0.009 0.001 0.012 0.064 0.008 0.901 192 P 0.001 0.001 0.017 0.963 0.001 0.013 0.005 193 V 0.001 0.001 0.012 0.981 0.001 0.005 0.001 194 D 0.001 0.001 0.006 0.992 0.001 0.002 0.001 195 V 0.001 0.001 0.001 0.998 0.001 0.001 0.001 196 M 0.001 0.001 0.001 0.998 0.001 0.002 0.001 197 F 0.001 0.001 0.001 0.995 0.001 0.005 0.001 198 L 0.001 0.001 0.001 0.996 0.001 0.003 0.001 199 Y 0.001 0.001 0.001 0.999 0.001 0.001 0.001 200 K 0.001 0.001 0.001 0.996 0.001 0.003 0.001 201 T 0.001 0.001 0.001 0.997 0.001 0.003 0.001 202 I 0.001 0.001 0.001 0.999 0.001 0.001 0.001 203 E 0.001 0.001 0.001 0.998 0.001 0.002 0.001 204 W 0.001 0.001 0.001 0.995 0.001 0.004 0.001 205 V 0.001 0.001 0.001 0.995 0.001 0.004 0.001 206 G 0.001 0.001 0.001 0.991 0.001 0.008 0.001 207 G 0.001 0.001 0.001 0.953 0.001 0.044 0.001 208 L 0.001 0.001 0.002 0.959 0.001 0.034 0.004 209 A 0.001 0.001 0.002 0.981 0.003 0.009 0.004 210 D 0.001 0.001 0.006 0.970 0.005 0.015 0.004 211 L 0.001 0.001 0.005 0.970 0.001 0.021 0.002 212 A 0.001 0.001 0.004 0.977 0.002 0.013 0.003 213 E 0.001 0.001 0.004 0.978 0.002 0.014 0.001 214 R 0.001 0.001 0.004 0.956 0.002 0.033 0.004 215 V 0.001 0.001 0.007 0.956 0.001 0.032 0.004 216 G 0.001 0.001 0.009 0.971 0.003 0.011 0.005 217 S 0.001 0.001 0.009 0.964 0.005 0.015 0.004 218 R 0.003 0.001 0.007 0.945 0.002 0.040 0.002 219 L 0.026 0.002 0.003 0.926 0.003 0.026 0.015 220 E 0.121 0.001 0.005 0.823 0.010 0.012 0.028 221 L 0.150 0.001 0.008 0.810 0.007 0.010 0.014 222 M 0.194 0.001 0.006 0.743 0.008 0.032 0.017 223 L 0.292 0.006 0.007 0.602 0.015 0.059 0.019 224 A 0.394 0.009 0.005 0.411 0.025 0.084 0.072 225 R 0.159 0.007 0.004 0.125 0.015 0.081 0.608 226 V 0.011 0.001 0.001 0.008 0.008 0.004 0.968