# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sumB 235 1.96e-07 a.7.12.1 106025 1xwmA 217 2.91e-06 1vctA 205 2.90e-02 1wkbA 810 1.24e-01 1keaA 221 2.68e-01 a.96.1.2 68491 2c6cA 707 6.41e-01 2dc3A 193 8.11e-01 1oq9A 363 9.70e-01 a.25.1.2 87257 2abk 211 1.13e+00 2abk a.96.1.1 18743 1urvA 190 1.20e+00 1ofcX 304 1.27e+00 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1vj7A 393 1.27e+00 a.211.1.1,d.218.1.8 100801,100802 2ah6A 208 1.49e+00 2f6hX 419 1.50e+00 1j1vA 94 1.53e+00 a.4.12.2 83981 1mkiA 330 1.67e+00 e.3.1.2 84994 1ku1A 230 2.18e+00 a.118.3.1 72996 1kgnA 329 2.26e+00 a.25.1.2 68584 1r8mE 203 2.47e+00 a.118.3.1 97242 1ouvA 273 2.75e+00 a.118.18.1 93570 1wphA 201 2.89e+00 1ngnA 155 3.12e+00 a.96.1.2 85697 1vls 146 3.52e+00 1vls a.24.2.1 16532 1xqsA 280 3.54e+00 1w2yA 229 3.61e+00 a.204.1.1 109140 1x42A 232 4.41e+00 1s4bP 674 4.93e+00 d.92.1.5 105252 2b7aA 293 5.14e+00 1cuk 203 5.24e+00 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1xqrA 296 5.27e+00 1rzhL 281 5.31e+00 f.26.1.1 98164 1rzhM 307 5.33e+00 f.26.1.1 98165 1qsaA 618 5.65e+00 1qsaA a.118.5.1,d.2.1.6 19182,36988 1yozA 116 5.77e+00 1cnt1 187 6.02e+00 1cnt3 1paqA 189 6.47e+00 a.118.1.14 94413 2awiA 317 6.53e+00 1ho8A 480 6.56e+00 1ho8A a.118.1.9 61107 1n7sA 63 7.03e+00 h.1.15.1 80271 1nm2A 317 7.41e+00 c.19.1.1,d.58.23.1 80654,80655 1n81A 186 7.50e+00 a.185.1.1 85388 1siqA 392 7.70e+00 a.29.3.1,e.6.1.1 105585,105586 1woyA 500 7.76e+00 1jdhA 529 8.26e+00 a.118.1.1 66549 1k04A 162 8.39e+00 a.24.14.1 67904 2bb6A 414 8.52e+00 1wy6A 172 8.54e+00 1tffA 234 8.71e+00 d.3.1.11 106854 1twfA 1733 8.72e+00 1in4A 334 8.86e+00 1hqcA a.4.5.11,c.37.1.20 62597,62598 1in6A 334 8.93e+00 1hqcA a.4.5.11,c.37.1.20 62601,62602 2cj4A 150 9.36e+00 1v54A 514 9.81e+00 f.24.1.1 100321 1na3A 91 1.00e+01 k.38.1.1 85481 1fgkA 310 1.04e+01 1fgkA d.144.1.7 41693 1iw0A 215 1.04e+01 a.132.1.1 83720 1j1jA 240 1.06e+01 a.118.16.1 90762 2fmpA 335 1.08e+01 1x8vA 455 1.09e+01 1z72A 225 1.14e+01 1aisB 200 1.15e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1wleA 501 1.20e+01 1o5hA 214 1.22e+01 a.191.1.1 92497 2fq4A 192 1.24e+01 1xk4A 93 1.27e+01 1jsdB 176 1.30e+01 h.3.1.1 63259 1ir6A 424 1.33e+01 c.107.1.2 71342 2btdA 210 1.34e+01 1dxrM 323 1.35e+01 6prcM f.26.1.1 43432 1h3lA 87 1.35e+01 a.177.1.1 76639 1vi0A 206 1.36e+01 a.4.1.9,a.121.1.1 100720,100721 1dowA 205 1.40e+01 1dovA a.24.9.1 16626 2fpqA 444 1.40e+01 2fnoA 248 1.42e+01 1wwpA 119 1.42e+01 1z5hA 780 1.43e+01 2db0A 253 1.43e+01 1nvmA 345 1.49e+01 a.5.7.1,c.1.10.5 86249,86250 1q0gA 117 1.52e+01 a.24.22.1 104428 1r8sE 203 1.52e+01 a.118.3.1 97248 1wy0A 342 1.54e+01 1n4kA 381 1.57e+01 a.118.22.1,b.42.6.1 79992,79993 1wzdA 215 1.64e+01 1k6iA 352 1.79e+01 c.2.1.2 68223 1vhnA 318 1.84e+01 c.1.4.1 100693 1gnlA 544 1.84e+01 e.26.1.1 70287 1dkzA 219 1.86e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1khyA 148 1.91e+01 a.174.1.1 77410 1pjr 724 1.99e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 1nc5A 373 2.03e+01 a.102.1.6 85548 1xv5A 401 2.06e+01 1ka2A 499 2.07e+01 d.92.1.5 77305 1vljA 407 2.13e+01 e.22.1.2 108832 1gmjA 84 2.13e+01 h.4.8.1 65310 1mgtA 174 2.16e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1nznA 126 2.19e+01 a.118.8.1 92382 1h4vB 421 2.20e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 2erbA 125 2.30e+01 1eexA 554 2.31e+01 1dioA c.1.19.3 29650 1fcyA 236 2.34e+01 2lbd a.123.1.1 19282 1wusA 180 2.36e+01 2d5xA 141 2.37e+01 1p3qQ 54 2.39e+01 a.5.2.4 87748 1gvhA 396 2.41e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1txuA 273 2.43e+01 a.222.1.1 107439 1g8iA 190 2.46e+01 1rec a.39.1.5 60363 1sd4A 126 2.47e+01 a.4.5.39 105428 1xgkA 352 2.48e+01 1fxxA 482 2.55e+01 1fxxA c.55.3.5 33726 1x0vA 354 2.55e+01 1x1iA 752 2.59e+01 2aaxA 275 2.62e+01 1q5nA 454 2.67e+01 a.127.1.1 95901 1h2kA 349 2.69e+01 b.82.2.6 76572 2f31A 233 2.70e+01 1tn6A 382 2.74e+01 1vgmA 378 2.80e+01 1ornA 226 2.80e+01 a.96.1.1 87342 1zs9A 261 2.82e+01 1eexG 173 2.83e+01 1dioG a.23.2.1 16490 1yakA 263 2.84e+01 1s0pA 176 2.84e+01 a.192.1.1 98300 2fflA 756 2.84e+01 1m7kA 99 2.85e+01 a.7.7.1 74573 1m48A 133 2.86e+01 a.26.1.2 74443 1hw1A 239 2.86e+01 1e2xA a.4.5.6,a.78.1.1 16111,18441 2cwcA 303 2.93e+01 1qusA 322 2.95e+01 1ltm d.2.1.6 36991 2cfuA 658 2.98e+01 1r9kA 172 3.11e+01 a.168.1.1 104869 1np3A 338 3.14e+01 a.100.1.2,c.2.1.6 85946,85947 1ajsA 412 3.17e+01 1ajsA c.67.1.1 34276 1n97A 389 3.25e+01 a.104.1.1 80335 1qbzA 123 3.25e+01 1qbzA h.3.2.1 45729 1chuA 540 3.28e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1hbnA 549 3.31e+01 1mroA a.89.1.1,d.58.31.2 60898,60899 2fbnA 198 3.31e+01 1yg2A 179 3.32e+01 1z82A 335 3.35e+01 1mxrA 375 3.57e+01 a.25.1.2 85197 1z1lA 345 3.59e+01 1hlvA 131 3.61e+01 a.4.1.7,a.4.1.7 65854,65855 2gtsA 86 3.64e+01 1wovA 250 3.66e+01 1tdpA 111 3.68e+01 a.29.8.1 106781 2ftuA 118 3.69e+01 1ppjA 446 3.69e+01 d.185.1.1,d.185.1.1 104252,104253 2be3A 226 3.73e+01 2f6mB 109 3.74e+01 1vdkA 466 3.76e+01 a.127.1.1 100561 2e2aA 105 3.93e+01 a.7.2.1 88499 1h3nA 878 3.99e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1vp7A 100 4.00e+01 2aexA 346 4.01e+01 1aoy 78 4.02e+01 1aoy a.4.5.3 16087 1gtmA 419 4.04e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1mtyG 162 4.05e+01 1mtyG a.23.3.1 16498 1qpcA 279 4.06e+01 1fgkA d.144.1.7 41685 1elrA 131 4.08e+01 1a17 a.118.8.1 19209 1h5uA 842 4.16e+01 1a8i c.87.1.4 60655 1xlyA 234 4.31e+01 1opjA 293 4.31e+01 d.144.1.7 87230 2ch7A 309 4.34e+01 1wmuB 146 4.34e+01 a.1.1.2 109417 1n93X 375 4.38e+01 a.206.1.1 91707 1d2tA 231 4.43e+01 1d2tA a.111.1.1 19052 1jr8A 117 4.45e+01 a.24.15.1 67115 1k8kG 151 4.45e+01 a.118.13.1 68313 1r4pA 297 4.45e+01 d.165.1.2 97025 1lshA 1056 4.49e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2ayuA 417 4.51e+01 1wlmA 151 4.59e+01 1qkrA 188 4.61e+01 1qkrA a.24.9.1 16628 1fpzA 212 4.61e+01 1fpzA c.45.1.1 59976 2bw3A 534 4.68e+01 1utg 70 4.78e+01 1utg a.101.1.1 18813 1fc3A 120 4.80e+01 1fc3A a.4.6.3 16237 1e7lA 157 4.80e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1h16A 759 4.82e+01 c.7.1.1 76462 1cojA 212 4.99e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 2csgA 424 5.00e+01 1lf6A 684 5.00e+01 a.102.1.5,b.30.5.5 77918,77919 1xl3C 92 5.01e+01 1v54J 59 5.03e+01 f.23.4.1 100331 1wy5A 317 5.10e+01 1ykhB 132 5.11e+01 2bptA 861 5.11e+01 1puoA 170 5.20e+01 a.101.1.1,a.101.1.1 95134,95135 1orjA 130 5.22e+01 a.24.19.1 93456 1aq5A 47 5.32e+01 1aq5A h.1.6.1 45577 1gs9A 165 5.38e+01 a.24.1.1 83313 1tazA 365 5.39e+01 a.211.1.2 106734 1lk9A 448 5.42e+01 c.67.1.1 78057 1t33A 224 5.44e+01 a.4.1.9,a.121.1.1 106295,106296 2d0tA 406 5.50e+01 1sgmA 191 5.52e+01 a.4.1.9,a.121.1.1 105537,105538 2az0A 73 5.56e+01 1oz9A 150 5.58e+01 d.92.1.15 93808 2f1kA 279 5.61e+01 1dvpA 220 5.65e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358 2amdA 311 5.67e+01 2bl2A 156 5.68e+01 1gw5A 621 5.77e+01 a.118.1.10 70629 1dk8A 147 5.81e+01 1agrE a.91.1.1 18548 1z0kB 69 5.81e+01 1po5A 476 5.83e+01 a.104.1.1 94963 2gsvA 80 5.88e+01 1jdpA 441 5.88e+01 c.93.1.1 62906 1t6uA 117 5.90e+01 a.24.22.1 106584 1n2aA 201 5.94e+01 a.45.1.1,c.47.1.5 91553,91554 2ck3A 510 5.96e+01 1u5pA 216 6.00e+01 1pi1A 185 6.01e+01 a.29.7.1 94699 2btoA 473 6.03e+01 16vpA 366 6.03e+01 16vpA d.180.1.1 42601 1ywnA 316 6.05e+01 1dbhA 354 6.20e+01 1awe a.87.1.1,b.55.1.1 18514,26967 1khdA 345 6.20e+01 a.46.2.1,c.27.1.1 77400,77401 2d2sA 235 6.23e+01 1azsA 220 6.27e+01 1azsA d.58.29.1 39416 2fcwA 109 6.35e+01 1nf3A 195 6.37e+01 c.37.1.8 85594 1t46A 313 6.55e+01 d.144.1.7 106397 1wqgA 185 6.57e+01 1twfB 1224 6.60e+01 2cbiA 594 6.61e+01 1gntA 553 6.64e+01 e.26.1.1 70290 1tqgA 105 6.65e+01 a.24.10.3 107224 2g7gA 213 6.67e+01 1zo2A 129 6.75e+01 2es4D 332 6.75e+01 1nd4A 264 6.80e+01 d.144.1.6 91815 1odoA 408 6.82e+01 a.104.1.1 92783 2ch0A 133 6.88e+01 1uzeA 589 6.89e+01 d.92.1.5 108174 1x9iA 302 6.94e+01 1b79A 119 6.97e+01 1b79A a.81.1.1 18451 1eumA 165 7.01e+01 1eumA a.25.1.1 59507 1n7oA 721 7.02e+01 a.102.3.2,b.24.1.1,b.30.5.2 80259,80260,80261 1opc 110 7.03e+01 1opc a.4.6.1 16231 1jk0B 345 7.09e+01 a.25.1.2 63143 2f2bA 246 7.09e+01 1lla 628 7.10e+01 1lla a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 2c12A 439 7.14e+01 2fk8A 318 7.19e+01 1txdA 385 7.24e+01 a.87.1.1,b.55.1.1 107422,107423 1agjA 242 7.26e+01 1agjA b.47.1.1 25827 1zbpA 273 7.28e+01 1nkd 65 7.30e+01 1nkd a.30.1.1 16974 1uqtA 482 7.35e+01 c.87.1.6 99794 1vkeA 133 7.39e+01 a.152.1.2 108650 1ohuA 175 7.48e+01 f.1.4.1 93029 2dbnA 461 7.52e+01 1v66A 65 7.79e+01 1xm9A 457 7.82e+01 1dwkA 156 7.85e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1w6sB 74 7.91e+01 2bnxA 386 8.01e+01 1kf6C 130 8.01e+01 f.21.2.2 72399 1u2eA 289 8.02e+01 1jhgA 101 8.04e+01 1jhgA a.4.12.1 19009 1pszA 303 8.05e+01 1toaA c.92.2.2 35600 1nekC 129 8.07e+01 f.21.2.2 80431 1oaoA 674 8.10e+01 e.26.1.2 86744 1m0kA 262 8.13e+01 f.13.1.1 78344 1w9pA 433 8.13e+01 1f0lA 535 8.13e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1wrdA 103 8.15e+01 1ash 150 8.30e+01 1ash a.1.1.2 15622 1khoA 370 8.31e+01 a.124.1.1,b.12.1.3 72489,72490 1kq3A 376 8.35e+01 e.22.1.2 68790 1mtyB 384 8.35e+01 1mtyB a.25.1.2 16740 1hekA 131 8.37e+01 a.61.1.5 65818 5rubA 490 8.41e+01 1burA c.1.14.1,d.58.9.1 29382,39288 1i4mA 108 8.52e+01 d.6.1.1 66025 1hx1B 114 8.56e+01 1hx1B a.7.7.1 61350 1h6gA 256 8.60e+01 1h6gA a.24.9.1,a.24.9.1 60669,60670 2g0dA 409 8.61e+01 1u7gA 385 8.63e+01 f.44.1.1 107723 1ta3A 274 8.65e+01 c.1.8.5 106731 1epwA 1290 8.68e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2eulA 156 8.68e+01 1ohfA 644 8.71e+01 b.121.4.8 93014 1q0rA 298 8.76e+01 c.69.1.28 95508 7odcA 424 8.77e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 1q5zA 177 8.89e+01 a.196.1.1 95954 1ju3A 583 8.90e+01 b.18.1.13,c.69.1.21 67300,67301 1giqA 413 8.90e+01 d.166.1.1,d.166.1.1 76224,76225