# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sumB 235 4.34e-12 a.7.12.1 106025 1xwmA 217 1.19e-09 1vctA 205 7.41e-02 1o5hA 214 8.09e-02 a.191.1.1 92497 1sd4A 126 3.93e-01 a.4.5.39 105428 1hw1A 239 5.77e-01 1e2xA a.4.5.6,a.78.1.1 16111,18441 2b7aA 293 8.86e-01 1keaA 221 1.46e+00 a.96.1.2 68491 1vljA 407 1.74e+00 e.22.1.2 108832 1cuk 203 1.89e+00 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1bg1A 722 1.92e+00 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1eerA 166 1.98e+00 1eerA a.26.1.2 16846 1l8rA 101 2.62e+00 a.6.1.4 73700 1bf5A 545 2.62e+00 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 2g2dA 193 2.67e+00 1o9iA 266 2.89e+00 a.25.1.3 92671 1e0bA 68 3.01e+00 1e0bA b.34.13.2 37476 1urvA 190 3.40e+00 1zczA 464 3.82e+00 1j1vA 94 4.32e+00 a.4.12.2 83981 1in6A 334 4.91e+00 1hqcA a.4.5.11,c.37.1.20 62601,62602 1aep 161 5.32e+00 1aep a.63.1.1 18139 2g09A 297 5.66e+00 1uujA 88 6.67e+00 a.221.1.1 108046 1ymtA 246 6.80e+00 1yrcA 414 6.90e+00 1s4bP 674 6.99e+00 d.92.1.5 105252 1t0iA 191 7.08e+00 c.23.5.4 106209 1h5uA 842 7.17e+00 1a8i c.87.1.4 60655 1in4A 334 7.20e+00 1hqcA a.4.5.11,c.37.1.20 62597,62598 1ngnA 155 8.73e+00 a.96.1.2 85697 1n81A 186 1.06e+01 a.185.1.1 85388 2d5xA 141 1.07e+01 1mwwA 128 1.07e+01 d.80.1.4 91483 1v4xA 144 1.08e+01 a.1.1.2 108363 1ohuA 175 1.09e+01 f.1.4.1 93029 1w2yA 229 1.11e+01 a.204.1.1 109140 1fgkA 310 1.14e+01 1fgkA d.144.1.7 41693 1t33A 224 1.23e+01 a.4.1.9,a.121.1.1 106295,106296 1vp4A 425 1.26e+01 1qw9A 502 1.32e+01 b.71.1.2,c.1.8.3 96466,96467 1k6iA 352 1.33e+01 c.2.1.2 68223 1sr9A 644 1.72e+01 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962 2abk 211 1.77e+01 2abk a.96.1.1 18743 1irdA 141 1.86e+01 a.1.1.2 66286 1mxrA 375 1.95e+01 a.25.1.2 85197 1c3mA 147 2.09e+01 1jotA b.77.3.1 27983 2etsA 128 2.10e+01 1z8oA 404 2.12e+01 1na3A 91 2.16e+01 k.38.1.1 85481 2d8dA 90 2.17e+01 1em8B 112 2.18e+01 c.126.1.1 90458 1d02A 202 2.18e+01 1d02A c.52.1.8 33313 2g50A 530 2.19e+01 1ei7A 158 2.23e+01 1rmvA a.24.5.1 16584 1q1fA 151 2.29e+01 a.1.1.2 104476 1e4mM 501 2.32e+01 1e70M c.1.8.4 59226 1n7sA 63 2.44e+01 h.1.15.1 80271 2bk9A 153 2.46e+01 2cy5A 140 2.47e+01 1q5dA 419 2.73e+01 a.104.1.1 95891 1xgkA 352 2.81e+01 1q0gA 117 2.88e+01 a.24.22.1 104428 2b8iA 77 2.97e+01 1tqgA 105 3.02e+01 a.24.10.3 107224 1t9bA 677 3.11e+01 1r8mE 203 3.14e+01 a.118.3.1 97242 2dc3A 193 3.15e+01 1txuA 273 3.21e+01 a.222.1.1 107439 1spgA 144 3.27e+01 1abwA a.1.1.2 15409 2aeuA 374 3.28e+01 1odoA 408 3.38e+01 a.104.1.1 92783 1chuA 540 3.75e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1b79A 119 3.78e+01 1b79A a.81.1.1 18451 1v33A 366 3.83e+01 d.264.1.1 100278 1wmhA 89 4.01e+01 1fqiA 147 4.03e+01 1agrE a.91.1.1 18542 1vhcA 224 4.07e+01 c.1.10.1 100661 1wu4A 396 4.17e+01 1n5nA 180 4.21e+01 d.167.1.1 85336 1wy1A 172 4.27e+01 1wixA 164 4.28e+01 1jy2N 53 4.28e+01 h.1.8.1 67440 1r8sE 203 4.32e+01 a.118.3.1 97248 1qpcA 279 4.40e+01 1fgkA d.144.1.7 41685 1elrA 131 4.44e+01 1a17 a.118.8.1 19209 1cpt 412 4.45e+01 1cpt a.104.1.1 18968 1chmA 401 4.49e+01 1chmA c.55.2.1,d.127.1.1 33545,41142 2fldA 165 4.50e+01 1h3lA 87 4.52e+01 a.177.1.1 76639 1p4oA 322 4.53e+01 d.144.1.7 87775 1o65A 246 4.56e+01 b.58.1.2 92544 1r0vA 305 4.60e+01 c.52.2.1,c.52.2.1,d.75.1.1 96742,96743,96744 1zbpA 273 4.62e+01 1zxaA 67 4.66e+01 1obbA 480 4.72e+01 c.2.1.5,d.162.1.2 86760,86761 1ylmA 144 4.74e+01 2a33A 215 4.97e+01 2fji1 399 5.03e+01 2e2aA 105 5.14e+01 a.7.2.1 88499 1wc3A 219 5.17e+01 1g6aA 271 5.26e+01 1btl e.3.1.1 42704 1vhnA 318 5.30e+01 c.1.4.1 100693 1p2fA 220 5.36e+01 a.4.6.1,c.23.1.1 87720,87721 1ornA 226 5.60e+01 a.96.1.1 87342 1puc 105 5.68e+01 1puc d.97.1.1 40675 2f42A 179 5.78e+01 1lc5A 364 5.79e+01 c.67.1.1 73827 1wy6A 172 5.80e+01 1w9gA 104 5.81e+01 1elkA 157 5.94e+01 1dvpA a.118.9.2 19217 2c2qA 199 6.02e+01 1twfB 1224 6.03e+01 1sziA 247 6.04e+01 a.24.23.1 106159 1l7mA 211 6.20e+01 c.108.1.4 73664 1p7gA 222 6.23e+01 a.2.11.1,d.44.1.1 94223,94224 2govA 195 6.27e+01 1k47A 337 6.40e+01 d.14.1.5,d.58.26.4 72040,72041 1xk4A 93 6.54e+01 1ep3A 311 6.57e+01 2dorA c.1.4.1 28597 1vj7A 393 6.60e+01 a.211.1.1,d.218.1.8 100801,100802 1ffyA 917 6.73e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1m7kA 99 6.81e+01 a.7.7.1 74573 1khdA 345 6.82e+01 a.46.2.1,c.27.1.1 77400,77401 2fug7 129 6.97e+01 1o5kA 306 7.03e+01 c.1.10.1 92504 1pb6A 212 7.25e+01 a.4.1.9,a.121.1.1 88017,88018 1usmA 80 7.38e+01 d.74.1.1 99876 1tqhA 247 7.54e+01 c.69.1.29 107225 1owcA 427 7.84e+01 a.103.1.1 104039 1ir6A 424 7.87e+01 c.107.1.2 71342 1e0tA 470 7.89e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1wy2A 351 7.98e+01 1jpzA 473 8.01e+01 a.104.1.1 67069 1pa7A 130 8.07e+01 a.40.1.1 94410 1b5pA 385 8.08e+01 c.67.1.1 90403 1u7kA 131 8.12e+01 2gh1A 301 8.21e+01 1oj5A 132 8.33e+01 d.110.3.8 93087 1tadA 324 8.37e+01 1cipA a.66.1.1,c.37.1.8 18194,32077 3caoA 103 8.62e+01 3caoA a.138.1.1 19661 1fgyA 127 8.65e+01 1faoA b.55.1.1 26976 1t7vA 278 8.69e+01 1z8kA 193 8.73e+01 1qv9A 283 8.76e+01 c.127.1.1 96356 2ck3H 146 8.95e+01