# TARGET T0365 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0365.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 164 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.014 0.007 0.002 0.012 0.082 0.882 2 P 0.042 0.013 0.006 0.052 0.088 0.798 3 V 0.076 0.029 0.050 0.303 0.158 0.384 4 N 0.109 0.020 0.085 0.307 0.235 0.244 5 S 0.123 0.012 0.139 0.387 0.185 0.154 6 I 0.127 0.020 0.101 0.397 0.199 0.156 7 L 0.086 0.016 0.085 0.484 0.174 0.156 8 G 0.077 0.011 0.071 0.176 0.221 0.444 9 V 0.083 0.022 0.106 0.114 0.292 0.383 10 F 0.082 0.040 0.084 0.078 0.341 0.374 11 A 0.058 0.028 0.052 0.070 0.396 0.396 12 K 0.033 0.021 0.028 0.063 0.429 0.426 13 S 0.014 0.008 0.011 0.030 0.480 0.456 14 P 0.003 0.005 0.113 0.316 0.346 0.218 15 I 0.007 0.015 0.071 0.406 0.247 0.253 16 K 0.005 0.008 0.067 0.450 0.288 0.182 17 P 0.001 0.002 0.094 0.689 0.120 0.094 18 L 0.001 0.002 0.067 0.868 0.036 0.026 19 Q 0.001 0.001 0.037 0.928 0.026 0.009 20 E 0.001 0.001 0.029 0.938 0.019 0.013 21 H 0.001 0.001 0.013 0.971 0.008 0.008 22 M 0.001 0.001 0.005 0.988 0.004 0.003 23 D 0.001 0.001 0.004 0.988 0.004 0.003 24 K 0.001 0.001 0.004 0.987 0.004 0.004 25 V 0.001 0.001 0.003 0.991 0.003 0.003 26 Y 0.001 0.001 0.002 0.995 0.002 0.001 27 D 0.001 0.001 0.002 0.996 0.001 0.001 28 C 0.001 0.001 0.002 0.996 0.001 0.001 29 A 0.001 0.001 0.003 0.995 0.001 0.001 30 S 0.001 0.001 0.005 0.992 0.001 0.001 31 L 0.001 0.001 0.009 0.986 0.003 0.002 32 L 0.001 0.001 0.007 0.986 0.003 0.004 33 V 0.001 0.001 0.011 0.976 0.006 0.006 34 P 0.001 0.001 0.009 0.983 0.005 0.002 35 F 0.001 0.001 0.002 0.996 0.001 0.001 36 F 0.001 0.001 0.001 0.996 0.001 0.001 37 E 0.001 0.001 0.003 0.994 0.002 0.001 38 A 0.001 0.001 0.003 0.992 0.003 0.001 39 T 0.001 0.001 0.005 0.980 0.013 0.002 40 I 0.001 0.001 0.009 0.904 0.068 0.017 41 T 0.001 0.001 0.009 0.735 0.162 0.093 42 G 0.001 0.006 0.003 0.064 0.263 0.664 43 N 0.001 0.003 0.001 0.016 0.082 0.896 44 W 0.001 0.001 0.052 0.873 0.043 0.031 45 D 0.002 0.001 0.040 0.888 0.045 0.024 46 D 0.002 0.001 0.013 0.948 0.022 0.014 47 A 0.001 0.001 0.001 0.992 0.002 0.004 48 V 0.001 0.001 0.001 0.998 0.001 0.001 49 Q 0.001 0.001 0.001 0.997 0.001 0.001 50 I 0.001 0.001 0.001 0.996 0.001 0.002 51 R 0.001 0.001 0.001 0.999 0.001 0.001 52 K 0.001 0.001 0.001 0.998 0.001 0.001 53 Q 0.001 0.001 0.001 0.997 0.001 0.001 54 I 0.001 0.001 0.001 0.999 0.001 0.001 55 S 0.001 0.001 0.001 0.998 0.001 0.001 56 L 0.001 0.001 0.001 0.997 0.001 0.001 57 A 0.001 0.001 0.003 0.993 0.002 0.002 58 E 0.001 0.001 0.005 0.990 0.003 0.001 59 K 0.001 0.001 0.004 0.992 0.002 0.002 60 Q 0.001 0.001 0.004 0.979 0.003 0.014 61 G 0.001 0.001 0.007 0.932 0.011 0.049 62 D 0.001 0.001 0.007 0.963 0.011 0.018 63 S 0.001 0.001 0.004 0.992 0.002 0.002 64 L 0.001 0.001 0.001 0.998 0.001 0.001 65 K 0.001 0.001 0.001 0.998 0.001 0.001 66 R 0.001 0.001 0.001 0.997 0.001 0.001 67 E 0.001 0.001 0.001 0.995 0.002 0.001 68 I 0.001 0.001 0.003 0.991 0.003 0.001 69 R 0.002 0.001 0.010 0.980 0.006 0.001 70 L 0.005 0.001 0.009 0.973 0.008 0.004 71 T 0.014 0.005 0.011 0.783 0.036 0.152 72 L 0.030 0.044 0.026 0.208 0.302 0.390 73 P 0.045 0.011 0.060 0.044 0.615 0.225 74 S 0.065 0.004 0.079 0.018 0.690 0.144 75 G 0.309 0.011 0.053 0.011 0.468 0.148 76 L 0.699 0.019 0.011 0.006 0.099 0.166 77 F 0.807 0.034 0.005 0.004 0.037 0.112 78 M 0.675 0.014 0.004 0.005 0.078 0.224 79 P 0.294 0.008 0.007 0.008 0.170 0.513 80 V 0.100 0.023 0.018 0.028 0.187 0.644 81 E 0.042 0.014 0.015 0.056 0.126 0.748 82 R 0.001 0.001 0.078 0.899 0.012 0.010 83 T 0.001 0.001 0.045 0.938 0.010 0.006 84 D 0.001 0.001 0.042 0.951 0.005 0.001 85 L 0.001 0.001 0.007 0.990 0.002 0.001 86 L 0.001 0.001 0.005 0.993 0.002 0.001 87 E 0.001 0.001 0.003 0.994 0.002 0.001 88 L 0.001 0.001 0.003 0.994 0.002 0.001 89 L 0.001 0.001 0.003 0.989 0.003 0.004 90 T 0.001 0.001 0.005 0.984 0.006 0.005 91 Q 0.001 0.001 0.003 0.988 0.004 0.004 92 Q 0.001 0.001 0.005 0.979 0.006 0.010 93 D 0.001 0.001 0.014 0.960 0.014 0.012 94 K 0.001 0.001 0.010 0.977 0.007 0.006 95 I 0.001 0.001 0.003 0.994 0.002 0.002 96 A 0.001 0.001 0.005 0.982 0.007 0.006 97 N 0.001 0.001 0.010 0.966 0.015 0.008 98 K 0.001 0.001 0.009 0.963 0.012 0.015 99 A 0.001 0.001 0.004 0.991 0.002 0.002 100 K 0.001 0.001 0.004 0.990 0.003 0.003 101 D 0.001 0.001 0.004 0.989 0.003 0.004 102 I 0.001 0.001 0.005 0.984 0.004 0.006 103 S 0.001 0.001 0.007 0.972 0.011 0.008 104 G 0.006 0.001 0.020 0.884 0.054 0.036 105 R 0.025 0.002 0.019 0.848 0.064 0.042 106 V 0.093 0.005 0.016 0.750 0.072 0.064 107 I 0.120 0.006 0.022 0.735 0.059 0.059 108 G 0.123 0.003 0.022 0.706 0.066 0.079 109 R 0.118 0.005 0.032 0.570 0.083 0.192 110 Q 0.192 0.009 0.038 0.296 0.136 0.329 111 L 0.345 0.021 0.020 0.087 0.132 0.395 112 L 0.276 0.032 0.010 0.042 0.084 0.557 113 I 0.134 0.027 0.008 0.018 0.148 0.666 114 P 0.044 0.013 0.029 0.035 0.383 0.496 115 Q 0.010 0.004 0.171 0.095 0.497 0.222 116 A 0.008 0.007 0.251 0.213 0.386 0.136 117 L 0.008 0.011 0.117 0.372 0.273 0.219 118 Q 0.010 0.011 0.016 0.327 0.122 0.514 119 V 0.003 0.003 0.008 0.866 0.040 0.081 120 P 0.004 0.003 0.011 0.884 0.028 0.070 121 F 0.001 0.001 0.003 0.989 0.003 0.004 122 I 0.001 0.001 0.002 0.994 0.002 0.002 123 A 0.001 0.001 0.002 0.996 0.001 0.001 124 Y 0.001 0.001 0.001 0.997 0.001 0.001 125 L 0.001 0.001 0.001 0.998 0.001 0.001 126 Q 0.001 0.001 0.001 0.999 0.001 0.001 127 R 0.001 0.001 0.001 0.998 0.001 0.001 128 C 0.001 0.001 0.001 0.998 0.001 0.001 129 I 0.001 0.001 0.001 0.999 0.001 0.001 130 D 0.001 0.001 0.001 0.999 0.001 0.001 131 A 0.001 0.001 0.001 0.999 0.001 0.001 132 V 0.001 0.001 0.001 0.999 0.001 0.001 133 G 0.001 0.001 0.001 0.999 0.001 0.001 134 L 0.001 0.001 0.001 0.998 0.001 0.001 135 A 0.001 0.001 0.001 0.999 0.001 0.001 136 Q 0.001 0.001 0.001 0.999 0.001 0.001 137 Q 0.001 0.001 0.001 0.998 0.001 0.001 138 V 0.001 0.001 0.001 0.998 0.001 0.001 139 I 0.001 0.001 0.002 0.995 0.002 0.001 140 N 0.001 0.001 0.003 0.995 0.001 0.001 141 E 0.001 0.001 0.004 0.992 0.002 0.002 142 L 0.001 0.001 0.002 0.994 0.001 0.003 143 D 0.001 0.001 0.004 0.992 0.002 0.002 144 D 0.001 0.001 0.005 0.990 0.003 0.002 145 L 0.001 0.001 0.007 0.981 0.008 0.005 146 L 0.001 0.001 0.013 0.966 0.014 0.006 147 E 0.001 0.001 0.014 0.951 0.024 0.009 148 A 0.001 0.001 0.020 0.884 0.049 0.045 149 G 0.002 0.003 0.021 0.093 0.268 0.612 150 F 0.009 0.032 0.055 0.030 0.701 0.172 151 R 0.016 0.011 0.039 0.042 0.767 0.125 152 G 0.007 0.005 0.026 0.076 0.642 0.245 153 R 0.008 0.011 0.005 0.042 0.315 0.618 154 E 0.011 0.015 0.006 0.312 0.086 0.571 155 V 0.004 0.004 0.003 0.870 0.031 0.088 156 D 0.001 0.001 0.002 0.974 0.010 0.012 157 F 0.001 0.001 0.002 0.992 0.003 0.002 158 V 0.001 0.001 0.003 0.992 0.003 0.002 159 A 0.001 0.001 0.002 0.995 0.002 0.001 160 K 0.001 0.001 0.002 0.991 0.003 0.003 161 M 0.001 0.001 0.002 0.991 0.002 0.005 162 I 0.001 0.001 0.001 0.996 0.001 0.001 163 N 0.001 0.001 0.002 0.994 0.002 0.002 164 E 0.001 0.001 0.002 0.994 0.002 0.002 165 L 0.001 0.001 0.002 0.992 0.002 0.003 166 D 0.001 0.001 0.007 0.983 0.006 0.004 167 I 0.001 0.001 0.007 0.982 0.006 0.004 168 I 0.001 0.001 0.007 0.975 0.008 0.010 169 E 0.001 0.001 0.011 0.969 0.011 0.008 170 E 0.001 0.001 0.009 0.968 0.010 0.013 171 D 0.001 0.001 0.014 0.911 0.017 0.057 172 T 0.001 0.001 0.009 0.852 0.033 0.104 173 D 0.001 0.001 0.005 0.921 0.024 0.049 174 D 0.001 0.001 0.001 0.996 0.001 0.001 175 L 0.001 0.001 0.001 0.999 0.001 0.001 176 Q 0.001 0.001 0.001 0.999 0.001 0.001 177 I 0.001 0.001 0.001 0.999 0.001 0.001 178 Q 0.001 0.001 0.001 0.999 0.001 0.001 179 L 0.001 0.001 0.001 0.999 0.001 0.001 180 R 0.001 0.001 0.001 0.999 0.001 0.001 181 R 0.001 0.001 0.001 0.998 0.001 0.001 182 Q 0.001 0.001 0.001 0.996 0.001 0.001 183 L 0.001 0.001 0.003 0.988 0.003 0.006 184 F 0.001 0.001 0.013 0.960 0.013 0.013 185 A 0.002 0.001 0.024 0.908 0.036 0.030 186 L 0.004 0.003 0.027 0.814 0.071 0.081 187 E 0.005 0.003 0.052 0.736 0.116 0.088 188 S 0.010 0.004 0.073 0.460 0.242 0.212 189 E 0.008 0.006 0.065 0.224 0.304 0.393 190 L 0.015 0.026 0.008 0.055 0.249 0.646 191 N 0.008 0.004 0.001 0.012 0.079 0.897 192 P 0.001 0.001 0.015 0.959 0.011 0.014 193 V 0.002 0.001 0.012 0.968 0.012 0.007 194 D 0.004 0.001 0.021 0.959 0.010 0.006 195 V 0.004 0.001 0.003 0.987 0.002 0.003 196 M 0.002 0.001 0.003 0.993 0.001 0.001 197 F 0.001 0.001 0.003 0.995 0.001 0.001 198 L 0.001 0.001 0.002 0.997 0.001 0.001 199 Y 0.001 0.001 0.002 0.997 0.001 0.001 200 K 0.001 0.001 0.003 0.996 0.001 0.001 201 T 0.001 0.001 0.001 0.998 0.001 0.001 202 I 0.001 0.001 0.001 0.998 0.001 0.001 203 E 0.001 0.001 0.003 0.995 0.002 0.001 204 W 0.001 0.001 0.004 0.992 0.003 0.001 205 V 0.001 0.001 0.007 0.983 0.004 0.005 206 G 0.001 0.001 0.012 0.979 0.005 0.004 207 G 0.001 0.001 0.012 0.972 0.006 0.010 208 L 0.001 0.001 0.006 0.989 0.002 0.003 209 A 0.001 0.001 0.006 0.981 0.005 0.008 210 D 0.001 0.001 0.009 0.969 0.013 0.008 211 L 0.001 0.001 0.011 0.966 0.013 0.010 212 A 0.001 0.001 0.014 0.963 0.013 0.009 213 E 0.001 0.001 0.021 0.967 0.009 0.003 214 R 0.001 0.001 0.012 0.979 0.004 0.004 215 V 0.001 0.001 0.007 0.983 0.002 0.008 216 G 0.001 0.001 0.013 0.954 0.009 0.022 217 S 0.002 0.001 0.018 0.922 0.030 0.027 218 R 0.015 0.002 0.019 0.890 0.046 0.029 219 L 0.020 0.001 0.010 0.919 0.034 0.016 220 E 0.043 0.001 0.008 0.888 0.046 0.014 221 L 0.047 0.001 0.002 0.942 0.007 0.003 222 M 0.083 0.001 0.001 0.910 0.002 0.004 223 L 0.241 0.001 0.001 0.738 0.004 0.016 224 A 0.354 0.002 0.001 0.552 0.008 0.083 225 R 0.329 0.005 0.001 0.153 0.030 0.482 226 V 0.032 0.002 0.001 0.006 0.026 0.934