# TARGET T0365 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghstl-dssp-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0365.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 164 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.002 0.001 0.001 0.001 0.001 0.001 0.995 2 P 0.018 0.019 0.002 0.040 0.003 0.007 0.911 3 V 0.023 0.006 0.041 0.586 0.041 0.092 0.212 4 N 0.030 0.003 0.091 0.572 0.056 0.113 0.135 5 S 0.036 0.005 0.133 0.625 0.039 0.046 0.117 6 I 0.028 0.006 0.070 0.757 0.026 0.047 0.066 7 L 0.025 0.007 0.111 0.588 0.033 0.184 0.053 8 G 0.016 0.005 0.086 0.336 0.061 0.419 0.077 9 V 0.044 0.012 0.112 0.291 0.127 0.199 0.214 10 F 0.066 0.045 0.062 0.172 0.250 0.116 0.288 11 A 0.046 0.021 0.070 0.108 0.119 0.271 0.364 12 K 0.027 0.015 0.078 0.105 0.206 0.263 0.305 13 S 0.015 0.016 0.019 0.029 0.260 0.056 0.604 14 P 0.009 0.014 0.027 0.061 0.123 0.207 0.560 15 I 0.011 0.014 0.035 0.288 0.136 0.127 0.390 16 K 0.009 0.005 0.022 0.624 0.185 0.022 0.133 17 P 0.007 0.009 0.019 0.826 0.023 0.023 0.093 18 L 0.001 0.001 0.007 0.971 0.002 0.009 0.010 19 Q 0.001 0.001 0.002 0.992 0.001 0.002 0.002 20 E 0.001 0.001 0.003 0.991 0.001 0.005 0.001 21 H 0.001 0.001 0.001 0.992 0.001 0.005 0.002 22 M 0.001 0.001 0.001 0.998 0.001 0.001 0.001 23 D 0.001 0.001 0.001 0.996 0.001 0.003 0.001 24 K 0.001 0.001 0.001 0.994 0.001 0.006 0.001 25 V 0.001 0.001 0.001 0.995 0.001 0.004 0.001 26 Y 0.001 0.001 0.001 0.997 0.001 0.002 0.001 27 D 0.001 0.001 0.001 0.988 0.001 0.011 0.001 28 C 0.001 0.001 0.002 0.982 0.001 0.014 0.001 29 A 0.001 0.001 0.005 0.986 0.001 0.006 0.001 30 S 0.001 0.001 0.011 0.950 0.003 0.035 0.001 31 L 0.001 0.001 0.008 0.873 0.002 0.115 0.002 32 L 0.001 0.001 0.005 0.936 0.004 0.041 0.011 33 V 0.001 0.001 0.010 0.982 0.001 0.004 0.002 34 P 0.001 0.001 0.011 0.981 0.001 0.006 0.001 35 F 0.001 0.001 0.012 0.974 0.001 0.012 0.001 36 F 0.002 0.001 0.005 0.969 0.002 0.018 0.004 37 E 0.002 0.001 0.004 0.968 0.003 0.019 0.004 38 A 0.002 0.001 0.004 0.969 0.003 0.016 0.006 39 T 0.004 0.001 0.005 0.951 0.004 0.026 0.008 40 I 0.009 0.005 0.011 0.844 0.019 0.086 0.026 41 T 0.010 0.003 0.018 0.568 0.048 0.303 0.050 42 G 0.007 0.004 0.011 0.220 0.237 0.353 0.168 43 N 0.010 0.011 0.007 0.091 0.220 0.082 0.578 44 W 0.003 0.003 0.041 0.750 0.036 0.068 0.099 45 D 0.001 0.001 0.056 0.809 0.032 0.074 0.027 46 D 0.001 0.002 0.024 0.891 0.020 0.034 0.028 47 A 0.001 0.001 0.001 0.991 0.001 0.003 0.004 48 V 0.001 0.001 0.001 0.996 0.001 0.002 0.001 49 Q 0.001 0.001 0.001 0.996 0.001 0.002 0.001 50 I 0.001 0.001 0.001 0.996 0.001 0.002 0.001 51 R 0.001 0.001 0.001 0.995 0.001 0.003 0.001 52 K 0.001 0.001 0.001 0.991 0.001 0.009 0.001 53 Q 0.001 0.001 0.001 0.986 0.001 0.012 0.002 54 I 0.001 0.001 0.001 0.989 0.001 0.005 0.004 55 S 0.001 0.001 0.001 0.993 0.001 0.005 0.001 56 L 0.001 0.001 0.001 0.986 0.001 0.012 0.001 57 A 0.001 0.001 0.002 0.981 0.001 0.013 0.003 58 E 0.001 0.001 0.004 0.976 0.003 0.012 0.004 59 K 0.001 0.001 0.009 0.932 0.006 0.047 0.004 60 Q 0.001 0.001 0.004 0.944 0.003 0.044 0.005 61 G 0.001 0.001 0.002 0.965 0.006 0.014 0.012 62 D 0.001 0.001 0.002 0.969 0.006 0.011 0.012 63 S 0.001 0.001 0.002 0.984 0.001 0.009 0.003 64 L 0.001 0.001 0.001 0.993 0.001 0.003 0.002 65 K 0.001 0.001 0.001 0.995 0.001 0.002 0.002 66 R 0.001 0.001 0.001 0.995 0.001 0.002 0.001 67 E 0.001 0.001 0.001 0.995 0.001 0.004 0.001 68 I 0.001 0.001 0.001 0.982 0.001 0.014 0.001 69 R 0.001 0.001 0.007 0.969 0.002 0.018 0.002 70 L 0.003 0.001 0.017 0.887 0.003 0.084 0.005 71 T 0.004 0.002 0.041 0.707 0.034 0.182 0.030 72 L 0.014 0.010 0.010 0.083 0.463 0.032 0.389 73 P 0.015 0.005 0.063 0.028 0.176 0.294 0.419 74 S 0.061 0.009 0.127 0.030 0.166 0.496 0.110 75 G 0.220 0.012 0.128 0.041 0.156 0.240 0.204 76 L 0.519 0.025 0.044 0.019 0.092 0.074 0.227 77 F 0.571 0.035 0.011 0.008 0.066 0.026 0.285 78 M 0.529 0.036 0.004 0.003 0.125 0.013 0.291 79 P 0.291 0.045 0.005 0.002 0.091 0.025 0.540 80 V 0.093 0.048 0.015 0.012 0.255 0.048 0.529 81 E 0.024 0.027 0.012 0.015 0.109 0.021 0.792 82 R 0.001 0.001 0.085 0.886 0.002 0.023 0.004 83 T 0.001 0.001 0.048 0.934 0.001 0.016 0.001 84 D 0.001 0.001 0.025 0.961 0.002 0.009 0.003 85 L 0.001 0.001 0.001 0.995 0.001 0.003 0.001 86 L 0.001 0.001 0.001 0.997 0.001 0.002 0.001 87 E 0.001 0.001 0.001 0.997 0.001 0.003 0.001 88 L 0.001 0.001 0.001 0.995 0.001 0.003 0.001 89 L 0.001 0.001 0.001 0.990 0.001 0.006 0.001 90 T 0.001 0.001 0.002 0.955 0.001 0.041 0.001 91 Q 0.001 0.001 0.002 0.914 0.003 0.079 0.003 92 Q 0.001 0.001 0.002 0.959 0.003 0.029 0.006 93 D 0.001 0.001 0.006 0.959 0.008 0.017 0.009 94 K 0.001 0.001 0.013 0.950 0.003 0.027 0.006 95 I 0.001 0.001 0.006 0.969 0.002 0.021 0.002 96 A 0.001 0.001 0.003 0.978 0.004 0.011 0.004 97 N 0.001 0.001 0.004 0.965 0.006 0.019 0.006 98 K 0.001 0.001 0.003 0.971 0.002 0.022 0.002 99 A 0.001 0.001 0.001 0.989 0.001 0.007 0.002 100 K 0.001 0.001 0.002 0.992 0.001 0.004 0.001 101 D 0.001 0.001 0.002 0.987 0.001 0.009 0.001 102 I 0.001 0.001 0.003 0.977 0.001 0.017 0.002 103 S 0.001 0.001 0.004 0.977 0.002 0.014 0.003 104 G 0.002 0.001 0.005 0.967 0.002 0.021 0.003 105 R 0.004 0.001 0.005 0.963 0.002 0.022 0.004 106 V 0.016 0.002 0.006 0.935 0.004 0.030 0.008 107 I 0.042 0.003 0.009 0.834 0.010 0.082 0.020 108 G 0.069 0.002 0.020 0.723 0.025 0.113 0.047 109 R 0.092 0.004 0.025 0.494 0.055 0.253 0.075 110 Q 0.121 0.008 0.038 0.238 0.093 0.324 0.178 111 L 0.178 0.011 0.020 0.083 0.120 0.093 0.496 112 L 0.141 0.028 0.014 0.038 0.076 0.084 0.619 113 I 0.063 0.025 0.004 0.014 0.106 0.012 0.775 114 P 0.022 0.006 0.010 0.011 0.027 0.011 0.913 115 Q 0.007 0.002 0.258 0.354 0.083 0.236 0.059 116 A 0.004 0.002 0.354 0.215 0.039 0.305 0.080 117 L 0.010 0.017 0.136 0.284 0.066 0.101 0.387 118 Q 0.007 0.012 0.020 0.369 0.037 0.041 0.514 119 V 0.001 0.001 0.014 0.937 0.022 0.018 0.008 120 P 0.001 0.001 0.009 0.967 0.003 0.013 0.007 121 F 0.001 0.001 0.002 0.994 0.001 0.003 0.001 122 I 0.001 0.001 0.001 0.998 0.001 0.001 0.001 123 A 0.001 0.001 0.001 0.998 0.001 0.002 0.001 124 Y 0.001 0.001 0.001 0.996 0.001 0.003 0.001 125 L 0.001 0.001 0.001 0.999 0.001 0.001 0.001 126 Q 0.001 0.001 0.001 0.998 0.001 0.002 0.001 127 R 0.001 0.001 0.001 0.997 0.001 0.003 0.001 128 C 0.001 0.001 0.001 0.998 0.001 0.002 0.001 129 I 0.001 0.001 0.001 0.999 0.001 0.001 0.001 130 D 0.001 0.001 0.001 0.998 0.001 0.002 0.001 131 A 0.001 0.001 0.001 0.997 0.001 0.003 0.001 132 V 0.001 0.001 0.001 0.998 0.001 0.002 0.001 133 G 0.001 0.001 0.001 0.995 0.001 0.005 0.001 134 L 0.001 0.001 0.001 0.990 0.001 0.009 0.001 135 A 0.001 0.001 0.001 0.995 0.001 0.003 0.001 136 Q 0.001 0.001 0.001 0.998 0.001 0.002 0.001 137 Q 0.001 0.001 0.001 0.992 0.001 0.008 0.001 138 V 0.001 0.001 0.001 0.985 0.001 0.013 0.001 139 I 0.001 0.001 0.003 0.987 0.001 0.008 0.001 140 N 0.001 0.001 0.007 0.946 0.001 0.046 0.001 141 E 0.001 0.001 0.005 0.862 0.002 0.129 0.002 142 L 0.001 0.001 0.004 0.931 0.009 0.029 0.027 143 D 0.001 0.001 0.009 0.976 0.001 0.011 0.003 144 D 0.001 0.001 0.011 0.965 0.001 0.021 0.002 145 L 0.001 0.001 0.026 0.940 0.002 0.028 0.003 146 L 0.003 0.001 0.028 0.925 0.006 0.031 0.006 147 E 0.004 0.001 0.034 0.838 0.012 0.101 0.009 148 A 0.004 0.002 0.032 0.620 0.019 0.299 0.024 149 G 0.009 0.008 0.037 0.260 0.079 0.455 0.151 150 F 0.015 0.020 0.047 0.107 0.179 0.226 0.406 151 R 0.012 0.012 0.038 0.075 0.176 0.493 0.194 152 G 0.005 0.003 0.028 0.071 0.280 0.461 0.151 153 R 0.012 0.011 0.022 0.157 0.257 0.175 0.366 154 E 0.027 0.041 0.021 0.273 0.119 0.081 0.438 155 V 0.004 0.002 0.016 0.889 0.011 0.011 0.067 156 D 0.001 0.001 0.011 0.960 0.005 0.007 0.014 157 F 0.001 0.001 0.010 0.974 0.003 0.006 0.005 158 V 0.001 0.001 0.002 0.992 0.001 0.003 0.002 159 A 0.001 0.001 0.001 0.996 0.001 0.002 0.001 160 K 0.001 0.001 0.002 0.991 0.001 0.006 0.001 161 M 0.001 0.001 0.002 0.987 0.001 0.010 0.001 162 I 0.001 0.001 0.002 0.989 0.001 0.007 0.001 163 N 0.001 0.001 0.001 0.980 0.001 0.017 0.001 164 E 0.001 0.001 0.001 0.973 0.001 0.024 0.001 165 L 0.001 0.001 0.001 0.990 0.001 0.005 0.003 166 D 0.001 0.001 0.001 0.993 0.001 0.003 0.002 167 I 0.001 0.001 0.001 0.991 0.001 0.006 0.001 168 I 0.001 0.001 0.003 0.986 0.001 0.009 0.001 169 E 0.001 0.001 0.006 0.974 0.002 0.015 0.002 170 E 0.001 0.001 0.007 0.907 0.005 0.077 0.003 171 D 0.001 0.001 0.003 0.918 0.006 0.065 0.006 172 T 0.001 0.001 0.002 0.964 0.006 0.017 0.011 173 D 0.001 0.001 0.002 0.929 0.017 0.015 0.036 174 D 0.001 0.001 0.002 0.985 0.002 0.008 0.002 175 L 0.001 0.001 0.001 0.993 0.001 0.003 0.001 176 Q 0.001 0.001 0.001 0.995 0.001 0.002 0.002 177 I 0.001 0.001 0.001 0.996 0.001 0.001 0.001 178 Q 0.001 0.001 0.001 0.997 0.001 0.002 0.001 179 L 0.001 0.001 0.001 0.994 0.001 0.004 0.002 180 R 0.001 0.001 0.001 0.996 0.001 0.002 0.001 181 R 0.001 0.001 0.001 0.996 0.001 0.002 0.001 182 Q 0.001 0.001 0.001 0.991 0.001 0.007 0.001 183 L 0.001 0.001 0.002 0.975 0.001 0.021 0.001 184 F 0.001 0.001 0.006 0.945 0.004 0.040 0.005 185 A 0.001 0.001 0.021 0.831 0.008 0.120 0.018 186 L 0.001 0.001 0.036 0.766 0.016 0.145 0.035 187 E 0.003 0.006 0.113 0.537 0.084 0.159 0.098 188 S 0.003 0.002 0.188 0.239 0.068 0.456 0.045 189 E 0.003 0.002 0.135 0.145 0.102 0.560 0.054 190 L 0.009 0.016 0.023 0.084 0.465 0.095 0.307 191 N 0.005 0.009 0.001 0.011 0.070 0.008 0.896 192 P 0.001 0.001 0.018 0.962 0.001 0.013 0.005 193 V 0.001 0.001 0.013 0.980 0.001 0.005 0.001 194 D 0.001 0.001 0.006 0.991 0.001 0.002 0.001 195 V 0.001 0.001 0.001 0.998 0.001 0.001 0.001 196 M 0.001 0.001 0.001 0.998 0.001 0.002 0.001 197 F 0.001 0.001 0.001 0.994 0.001 0.005 0.001 198 L 0.001 0.001 0.001 0.996 0.001 0.003 0.001 199 Y 0.001 0.001 0.001 0.999 0.001 0.001 0.001 200 K 0.001 0.001 0.001 0.996 0.001 0.003 0.001 201 T 0.001 0.001 0.001 0.997 0.001 0.003 0.001 202 I 0.001 0.001 0.001 0.999 0.001 0.001 0.001 203 E 0.001 0.001 0.001 0.998 0.001 0.002 0.001 204 W 0.001 0.001 0.001 0.995 0.001 0.005 0.001 205 V 0.001 0.001 0.001 0.996 0.001 0.004 0.001 206 G 0.001 0.001 0.001 0.992 0.001 0.007 0.001 207 G 0.001 0.001 0.001 0.959 0.001 0.039 0.001 208 L 0.001 0.001 0.002 0.962 0.001 0.032 0.003 209 A 0.001 0.001 0.002 0.983 0.003 0.009 0.004 210 D 0.001 0.001 0.005 0.971 0.004 0.015 0.004 211 L 0.001 0.001 0.005 0.971 0.001 0.021 0.002 212 A 0.001 0.001 0.004 0.979 0.002 0.012 0.002 213 E 0.001 0.001 0.004 0.980 0.002 0.013 0.001 214 R 0.001 0.001 0.004 0.958 0.002 0.032 0.003 215 V 0.001 0.001 0.008 0.947 0.001 0.039 0.004 216 G 0.001 0.001 0.009 0.969 0.003 0.012 0.006 217 S 0.001 0.001 0.011 0.961 0.005 0.017 0.004 218 R 0.003 0.001 0.010 0.920 0.003 0.060 0.003 219 L 0.032 0.002 0.005 0.893 0.004 0.041 0.022 220 E 0.167 0.002 0.007 0.738 0.020 0.018 0.048 221 L 0.206 0.001 0.010 0.735 0.012 0.014 0.022 222 M 0.247 0.001 0.006 0.682 0.009 0.036 0.019 223 L 0.365 0.006 0.007 0.537 0.012 0.056 0.018 224 A 0.501 0.006 0.004 0.346 0.018 0.062 0.063 225 R 0.254 0.008 0.005 0.123 0.014 0.098 0.498 226 V 0.014 0.001 0.001 0.005 0.005 0.002 0.973