# List of top-scoring protein chains for T0365.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sumB 235 2.01e-07 a.7.12.1 106025 1t72A 227 2.91e-06 1xwmA 217 1.83e-03 1vctA 205 1.50e+00 1l4aA 80 3.90e+00 h.1.15.1 73559 1keaA 221 4.49e+00 a.96.1.2 68491 1s4bP 674 5.47e+00 d.92.1.5 105252 1sd4A 126 7.15e+00 a.4.5.39 105428 1fgkA 310 7.16e+00 1fgkA d.144.1.7 41693 2fo7A 136 8.10e+00 1vljA 407 8.33e+00 e.22.1.2 108832 2ct8A 497 8.38e+00 1sfcA 96 9.15e+00 1sfcA h.1.15.1 45643 1bmtA 246 9.26e+00 1bmtA a.46.1.1,c.23.6.1 17757,31235 1hn0A 1021 9.37e+00 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1wkbA 810 1.00e+01 1wz2A 967 1.23e+01 2eshA 118 1.34e+01 1j1vA 94 2.41e+01 a.4.12.2 83981 1gvhA 396 2.51e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1vkhA 273 2.69e+01 c.69.1.32 108662 1ofcX 304 2.69e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1oecA 316 2.97e+01 1kilA 66 3.18e+01 h.1.15.1 72518 1lh0A 213 3.19e+01 c.61.1.1 73896 1n7sA 63 3.22e+01 h.1.15.1 80271 1sto 213 3.34e+01 1opr c.61.1.1 34092 1euzA 419 3.55e+01 1k89 c.2.1.7,c.58.1.1 59513,59514 1gtmA 419 3.65e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 2fvoA 333 3.69e+01 1rq0A 342 3.70e+01 e.38.1.1 105044 1lpbB 449 3.72e+01 1gpl b.12.1.2,c.69.1.19 23643,34791 2c07A 285 3.74e+01 1kk9A 221 3.98e+01 d.115.1.1 77432 1ktbA 405 4.20e+01 b.71.1.1,c.1.8.1 72960,72961 1hjp 203 4.41e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16274,17947,25266 1hx1B 114 4.47e+01 1hx1B a.7.7.1 61350 1xgkA 352 4.62e+01 1k6xA 352 4.62e+01 c.2.1.2 68238 1k7jA 206 4.84e+01 d.115.1.1 72103 1t5jA 313 4.87e+01 a.209.1.1 99125 1ue8A 367 4.87e+01 a.104.1.1 107781 1w1oA 534 4.92e+01 d.58.32.4,d.145.1.1 109071,109072 1q0uA 219 5.01e+01 c.37.1.19 95512 2f3iA 150 5.03e+01 1kwgA 645 5.03e+01 b.71.1.1,c.1.8.1,c.23.16.5 77561,77562,77563 2abk 211 5.12e+01 2abk a.96.1.1 18743 1qi1A 475 5.29e+01 1euhA c.82.1.1 35381 1dkzA 219 5.29e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1nvmA 345 5.35e+01 a.5.7.1,c.1.10.5 86249,86250 1efm 393 5.38e+01 1efcA c.37.1.8 64732 1efuA 385 5.40e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25682,25722,32115 1d8tA 393 5.41e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25686,25726,32119 1efcA 393 5.41e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25680,25720,32113 1dg1G 394 5.41e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25684,25724,32117 1ob2A 393 5.41e+01 b.43.3.1,b.44.1.1,c.37.1.8 103900,103901,103902 1etu 394 5.44e+01 1efcA c.37.1.8 64737 2am1A 454 5.53e+01 1cuk 203 5.58e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1z8kA 193 5.90e+01 1wy5A 317 5.95e+01 2cy5A 140 6.07e+01 1noj 842 6.32e+01 1a8i c.87.1.4 35479 1xc7A 842 6.33e+01 1h5uA 842 6.33e+01 1a8i c.87.1.4 60655 1c50A 830 6.33e+01 1a8i c.87.1.4 35512 1abbA 828 6.44e+01 1a8i c.87.1.4 35536 2ffrA 825 6.46e+01 1tis 286 6.55e+01 1bkpA d.117.1.1 41040 2fug4 409 6.59e+01 2dc3A 193 6.63e+01 1liaA 164 6.63e+01 1cpcA a.1.1.3 15661 1esc 306 6.65e+01 1esc c.23.10.1 31334 1oroA 213 6.87e+01 1opr c.61.1.1 34093 1e0sA 174 6.93e+01 1hurA c.37.1.8 32057 2a5dA 175 6.94e+01 1dgd 432 7.07e+01 2dkb c.67.1.4 34443 2bfwA 200 7.08e+01 1d7uA 433 7.08e+01 2dkb c.67.1.4 34439 1ckv 141 7.10e+01 1ckv d.137.1.1 41452 1z3zA 431 7.17e+01 1m0qA 433 7.17e+01 c.67.1.4 78350 1hfvA 174 7.18e+01 1hurA c.37.1.8 32058 1b5pA 385 7.25e+01 c.67.1.1 90403 1b5oA 385 7.25e+01 c.67.1.1 90401 5bj3A 385 7.30e+01 c.67.1.1 100871 5bj4A 385 7.31e+01 c.67.1.1 100875 1zofA 198 7.32e+01 1uzrA 296 7.37e+01 a.25.1.2 108178 1dkxA 219 7.54e+01 1dkzA a.8.4.1,b.130.1.1 90339,90340 1afrA 345 7.56e+01 1afrA a.25.1.2 16805 1x9dA 538 7.62e+01 1bjwA 382 7.70e+01 1bjwA c.67.1.1 34349 1j9gA 147 7.70e+01 c.23.5.1 62757 1wswA 148 7.76e+01 2cunA 410 7.82e+01 1bkgA 385 7.92e+01 1bjwA c.67.1.1 34351 1t0gA 109 8.18e+01 d.120.1.2 99063 1j03A 102 8.19e+01 d.120.1.2 90733 1f4pA 147 8.23e+01 5nul c.23.5.1 59651 1oq9A 363 8.24e+01 a.25.1.2 87257 2a6tA 271 8.26e+01 1x42A 232 8.79e+01 1jihA 513 8.86e+01 d.240.1.1,e.8.1.7 90374,90375 1r71A 178 8.89e+01 a.4.14.1 104823 2bisA 440 8.89e+01