# List of top-scoring protein chains for T0364.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cyeA 133 2.64e-09 1s5uA 138 3.07e-09 d.38.1.1 98573 1njkA 156 3.66e-09 d.38.1.1 85818 2av9A 147 1.12e-08 1z54A 132 2.19e-08 2aliA 158 7.53e-08 1vpmA 169 1.69e-07 1yliA 153 2.32e-07 2gf6A 135 2.59e-07 1y7uA 174 3.02e-06 1lo7A 141 3.08e-06 d.38.1.1 74144 1lo9A 141 4.02e-06 d.38.1.1 74146 2gvhA 288 8.52e-06 2essA 248 2.36e-05 2h4uA 145 6.02e-04 2cy9A 140 1.31e-03 1psuA 140 6.61e-03 d.38.1.5 88285 2fs2A 151 6.62e-03 1wluA 136 7.38e-03 1zkiA 133 9.17e-03 1ixlA 131 2.04e-02 d.38.1.5 90717 2b3nA 159 2.88e-02 1u1zA 168 5.25e-02 d.38.1.6 107602 1iq6A 134 2.46e-01 d.38.1.4 76755 2b6eA 146 2.65e-01 1o0iA 138 3.02e-01 d.38.1.5 86532 2cwzA 141 4.05e-01 1q6wA 161 8.04e-01 d.38.1.4 96000 1q4uA 151 9.79e-01 d.38.1.5 95828 1t82A 155 1.12e+00 d.38.1.5 106639 1sh8A 154 1.93e+00 d.38.1.5 105549 1c8uA 285 2.01e+00 1c8uA d.38.1.3,d.38.1.3 38547,38548 1zhgA 139 2.64e+00 2bdvA 231 2.73e+00 1z6bA 154 2.75e+00 2fl8A 602 5.33e+00 1vh9A 149 5.68e+00 d.38.1.5 100653 1k77A 260 9.80e+00 c.1.15.5 72096 1eg0B 148 9.83e+00 1pkp i.1.1.1 45808 1pkp 150 9.88e+00 1pkp d.14.1.1,d.50.1.2 37551,38787 1dv4E 145 9.91e+00 i.1.1.3 45875 2f4pA 147 1.01e+01 2a4eA 215 1.06e+01 2a62A 322 1.16e+01 1zxkA 98 1.30e+01 2a4cA 99 1.86e+01 1vmkA 277 1.89e+01 2fibA 269 1.94e+01 3fib d.171.1.1 42457 1rf1C 311 1.95e+01 d.171.1.1,h.1.8.1 97351,97352 1re3C 311 1.95e+01 d.171.1.1,h.1.8.1 104894,104895 1ny71 189 1.96e+01 3fib 249 1.97e+01 3fib d.171.1.1 42455 1fzcC 319 1.98e+01 3fib d.171.1.1,h.1.8.1 42461,45592 1n86C 324 1.98e+01 d.171.1.1,h.1.8.1 80280,80281 2f4lA 297 1.98e+01 1grj 158 2.16e+01 1grj a.2.1.1,d.26.1.2 15691,38433 2bi0A 337 2.21e+01 1yocA 147 2.51e+01 1deqC 411 2.86e+01 i.9.1.1 45995 1wvuA 265 3.10e+01 1wvvA 265 3.11e+01 1khbA 625 3.12e+01 c.91.1.1,c.109.1.1 68606,68607 1hd0A 75 3.25e+01 1ha1 d.58.7.1 39188 1vh5A 148 3.33e+01 d.38.1.5 100642 1eif 135 3.56e+01 1bkb b.34.5.2,b.40.4.5 24608,25340 2eifA 136 3.58e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1szzA 177 3.82e+01 1vorV 113 3.88e+01 2b7uA 257 3.89e+01 2d3oS 115 3.90e+01 1y69U 91 3.95e+01 1vorX 86 4.04e+01 1te5A 257 4.04e+01 d.153.1.1 106795 1y6hA 177 4.29e+01 1sbkA 144 4.47e+01 d.38.1.5 98791 1j5uA 136 4.67e+01 d.208.1.1 71584 1hc1 657 4.70e+01 1lla a.85.1.1,a.86.1.1,b.1.18.3 18494,18505,21870 1l0oA 150 4.78e+01 d.122.1.3 73403 1tilA 146 4.79e+01 d.122.1.3 107004 1rq1A 386 4.81e+01 a.227.1.1 105047 1rp4A 389 4.81e+01 a.227.1.1 105027 1th8A 145 4.89e+01 d.122.1.3 106908 1tidA 136 4.89e+01 d.122.1.3 106999 1pg4A 652 4.91e+01 e.23.1.1 88067 1sg0A 230 4.93e+01 1zx1A 231 4.93e+01 2bzsA 236 4.96e+01 1nfdE 212 5.13e+01 8fabA b.1.1.1,b.1.1.2 20186,21202 1lilA 212 5.23e+01 8fabA b.1.1.1,b.1.1.2 20557,21466 1tie 172 5.25e+01 1wba b.42.4.1 25592 1oysA 245 5.47e+01 d.14.1.4,d.101.1.1 93758,93759 2fdbP 220 5.52e+01 1iilE 220 5.54e+01 1cvsC b.1.1.4,b.1.1.4 62437,62438 1y6wA 148 5.56e+01 1ws0A 156 5.61e+01 1lkjA 146 5.61e+01 a.39.1.5 84623 1sgwA 214 5.66e+01 c.37.1.12 105541 1oypA 245 5.70e+01 d.14.1.4,d.101.1.1 93734,93735 1p6pA 125 5.73e+01 b.60.1.2 87839 1zovA 386 5.86e+01 1zdzA 302 5.89e+01 1ckv 141 6.13e+01 1ckv d.137.1.1 41452 1outB 146 6.20e+01 1cg5B a.1.1.2 15579 2g1lA 104 6.34e+01 1clm 148 6.36e+01 1cll a.39.1.5 17301 1exrA 148 6.39e+01 1cll a.39.1.5 17299 1gawA 314 6.48e+01 1fnc b.43.4.2,c.25.1.1 25643,31533 1js8A 394 6.62e+01 a.86.1.1,b.112.1.1 67219,67220 1u83A 276 6.76e+01 c.1.27.1 107732 1n73C 330 6.80e+01 d.171.1.1,h.1.8.1 80217,80218 1nkgA 508 6.86e+01 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1v93A 296 7.33e+01 c.1.23.1 100532 1vjzA 341 7.34e+01 c.1.8.3 100838 1lwuC 323 7.42e+01 d.171.1.1,h.1.8.1 74312,74313 2cdhS 248 7.65e+01 1ah9 71 7.77e+01 1ah9 b.40.4.5 25330 1vr9A 213 7.91e+01 1ag9A 175 7.94e+01 1rcf c.23.5.1 31178 1wguA 136 8.02e+01 1g43A 160 8.07e+01 1nbcA b.2.2.2 22392 2davA 126 8.08e+01 1nfiA 301 8.08e+01 1a3qA b.1.18.1,b.2.5.3 21942,22455 2aioA 269 8.09e+01 1rcqA 357 8.27e+01 b.49.2.2,c.1.6.1 104882,104883 1e3dB 542 8.29e+01 1h2rL e.18.1.1 59189 1j6uA 469 8.82e+01 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1gph1 465 8.97e+01 1ecfB