# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cyeA 133 8.42e-15 1s5uA 138 1.09e-14 d.38.1.1 98573 1z54A 132 8.01e-14 2aliA 158 1.97e-12 2gf6A 135 6.00e-12 1yliA 153 1.68e-11 1vpmA 169 3.73e-11 1lo7A 141 4.79e-11 d.38.1.1 74144 2essA 248 6.16e-10 2gvhA 288 1.47e-08 2h4uA 145 1.27e-07 2fs2A 151 4.33e-06 1j1yA 136 8.30e-06 d.38.1.5 90776 1wluA 136 1.24e-05 1ixlA 131 2.14e-05 d.38.1.5 90717 1zkiA 133 3.46e-05 2b3nA 159 1.14e-04 1o0iA 138 4.66e-04 d.38.1.5 86532 1q4uA 151 1.09e-03 d.38.1.5 95828 2cwzA 141 1.15e-03 1iq6A 134 2.37e-03 d.38.1.4 76755 1c8uA 285 5.62e-03 1c8uA d.38.1.3,d.38.1.3 38547,38548 1vh5A 148 6.85e-03 d.38.1.5 100642 1t82A 155 7.24e-03 d.38.1.5 106639 1z6bA 154 1.05e-02 1sh8A 154 1.35e-02 d.38.1.5 105549 2bi0A 337 2.36e-01 1yocA 147 3.92e-01 1tbuA 118 9.64e-01 1zxkA 98 1.00e+00 1e8yA 966 1.08e+00 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1nlbH 218 1.61e+00 b.1.1.1,b.1.1.2 80621,80622 1pn2A 280 1.71e+00 d.38.1.4,d.38.1.4 94930,94931 2c8mA 262 2.10e+00 1z2iA 358 2.11e+00 1j5uA 136 2.38e+00 d.208.1.1 71584 1uliB 187 2.53e+00 d.17.4.4 107923 1mxmA 254 3.21e+00 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1k78A 149 3.54e+00 a.4.1.5,a.4.1.5 68255,68256 1vjzA 341 3.69e+00 c.1.8.3 100838 1d3yA 301 3.84e+00 1d3yA e.12.1.1 43252 1u7kA 131 4.12e+00 1f3mA 80 4.26e+00 1f3mA j.66.1.1 46358 1m3sA 186 4.43e+00 c.80.1.3 78573 2b7uA 257 4.44e+00 1zxfA 155 4.94e+00 1ox0A 430 5.08e+00 c.95.1.1,c.95.1.1 87495,87496 1f8rA 498 5.50e+00 1f8rA c.3.1.2,d.16.1.5 30410,37974 1jeoA 180 5.60e+00 c.80.1.3 66611 1iqzA 81 6.04e+00 d.58.1.4 66281 1b8aA 438 6.17e+00 1b8aA b.40.4.1,d.104.1.1 25244,40765 1w66A 232 6.29e+00 1exrA 148 6.60e+00 1cll a.39.1.5 17299 1q3iA 214 6.66e+00 d.220.1.1 104524 2bm3A 166 7.19e+00 2booA 247 7.40e+00 1js8A 394 7.46e+00 a.86.1.1,b.112.1.1 67219,67220 1hr0W 71 7.68e+00 1ah9 b.40.4.5 25329 1fm0D 81 7.77e+00 1fmaD d.15.3.1 37642 2bdvA 231 8.43e+00 1jkoC 52 8.62e+00 a.4.1.2 66809 1tyjA 170 8.94e+00 1kt6A 183 9.50e+00 b.60.1.1 84466 1txqA 93 9.52e+00 1j05B 121 1.01e+01 b.1.1.1 90736 1z2lA 423 1.02e+01 1to6A 371 1.10e+01 c.141.1.1 107170 1j6oA 268 1.11e+01 c.1.9.12 77088 8fabA 212 1.12e+01 8fabA b.1.1.1,b.1.1.2 19772,20882 1vcaA 202 1.14e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 1zmdA 474 1.14e+01 1a8q 274 1.16e+01 1brt c.69.1.12 34702 1jyaA 130 1.21e+01 d.198.1.1 67453 1k77A 260 1.22e+01 c.1.15.5 72096 1xc3A 302 1.26e+01 1oe4A 247 1.31e+01 c.18.1.3 86895 1v93A 296 1.31e+01 c.1.23.1 100532 1g87A 614 1.32e+01 a.102.1.2,b.2.2.2 83275,83276 1wf3A 301 1.33e+01 1l0wA 580 1.35e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1se8A 301 1.37e+01 b.40.4.3 105448 1r8gA 372 1.40e+01 d.128.1.3 104845 1s7iA 124 1.41e+01 d.58.4.9 105353 1n8vA 112 1.41e+01 a.118.21.1 85457 1s4kA 120 1.43e+01 a.35.1.6 105254 1jbeA 128 1.49e+01 3chy c.23.1.1 62845 2aotA 292 1.51e+01 1zdzA 302 1.56e+01 1akhA 61 1.60e+01 1akhA a.4.1.1 15980 1yrtA 364 1.65e+01 1e3oC 160 1.66e+01 1au7A a.4.1.1,a.35.1.1 59197,59198 1vflA 356 1.69e+01 1y8aA 332 1.71e+01 2aioA 269 1.82e+01 1wmwA 330 1.84e+01 1cmcA 104 1.87e+01 1cmbA a.43.1.5 17462 1ug3A 339 1.88e+01 1nkqA 259 1.89e+01 d.177.1.1 103862 1q2yA 140 1.89e+01 d.108.1.1 95655 1aohA 147 1.90e+01 1aohA b.2.2.2 22401 1zvnA 99 1.90e+01 1wmaA 276 1.93e+01 1ka2A 499 2.00e+01 d.92.1.5 77305 2bsjA 133 2.00e+01 1widA 130 2.02e+01 1te5A 257 2.03e+01 d.153.1.1 106795 1myn 44 2.05e+01 1gpt g.3.7.4 44172 1lc5A 364 2.07e+01 c.67.1.1 73827 1u8fO 335 2.10e+01 1qksA 567 2.13e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1pp7U 131 2.23e+01 a.4.5.44 94973 1zndA 174 2.25e+01 1ztsA 139 2.30e+01 2f3yA 148 2.33e+01 1qy1A 174 2.35e+01 b.60.1.1 96568 2ezvA 269 2.37e+01 2f4lA 297 2.41e+01 1q0xH 221 2.41e+01 b.1.1.1,b.1.1.2 95517,95518 2as0A 396 2.42e+01 1zxuA 217 2.45e+01 1w7lA 422 2.49e+01 c.67.1.1 109226 1l6eA 46 2.49e+01 a.31.1.1 73607 1mjuL 219 2.54e+01 b.1.1.1,b.1.1.2 91304,91305 1oaqH 121 2.56e+01 b.1.1.1 92707 1vj1A 363 2.64e+01 b.35.1.2,c.2.1.1 100794,100795 2f6hX 419 2.69e+01 2cu3A 64 2.69e+01 1zanL 214 2.71e+01 3fib 249 2.77e+01 3fib d.171.1.1 42455 1fjlA 81 2.80e+01 2hddA a.4.1.1 16017 1hkhA 279 2.81e+01 c.69.1.12 90628 1i1jA 108 2.86e+01 1i1jA b.34.2.1 61531 2as9A 210 2.88e+01 1ns5A 155 2.89e+01 c.116.1.3 80705 2fxqA 264 2.94e+01 1p3dA 475 2.95e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1zw8A 64 2.97e+01 2ct9A 208 2.98e+01 1n4xH 120 2.99e+01 b.1.1.1 85324 1l7mA 211 3.03e+01 c.108.1.4 73664 1r77A 103 3.05e+01 1vhyA 257 3.07e+01 b.122.1.2,c.116.1.5 100714,100715 1wocA 103 3.09e+01 1jakA 512 3.09e+01 c.1.8.6,d.92.2.1 66472,66473 1v6tA 255 3.12e+01 1hq1A 105 3.15e+01 1dulA a.36.1.1 17120 1z5yE 149 3.17e+01 1yoeA 322 3.22e+01 1q1vA 70 3.31e+01 a.159.4.1 104479 1x7oA 287 3.33e+01 1i3zA 103 3.37e+01 d.93.1.1 83667 2cwsA 237 3.38e+01 1vr5A 547 3.42e+01 1ulrA 88 3.46e+01 1bwwA 109 3.47e+01 8fabA b.1.1.1 20518 1q7lA 198 3.48e+01 c.56.5.4 96044 1n0wB 35 3.50e+01 j.97.1.1 79773 2ftbA 125 3.54e+01 1a0p 290 3.54e+01 1a0p a.60.9.1,d.163.1.1 18105,42165 1otvA 259 3.56e+01 a.132.1.4 93526 1of5A 221 3.58e+01 d.17.4.2 86933 2cpgA 45 3.61e+01 2cpgA a.43.1.3 17455 1m1fA 110 3.63e+01 b.34.6.2 78401 1d2sA 170 3.66e+01 1d2sA b.29.1.4 24221 1bgvA 449 3.69e+01 1k89 c.2.1.7,c.58.1.1 30217,33865 1e7uA 961 3.70e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19147,23182,37630,41710 1yopA 83 3.72e+01 1zwyA 185 3.80e+01 1xyiA 66 3.84e+01 1vmaA 306 3.88e+01 a.24.13.1,c.37.1.10 108887,108888 1ummA 172 3.89e+01 a.3.1.1 107958 1fbr 93 3.91e+01 1fbr g.27.1.1,g.27.1.1 44948,44949 1wdiA 345 3.96e+01 1mqkH 127 3.97e+01 b.1.1.1 85053 1ufwA 95 3.97e+01 d.58.7.1 99358 1aquA 297 4.02e+01 1aquA c.37.1.5 31942 1ww7A 160 4.05e+01 1fipA 98 4.08e+01 1fipA a.4.1.12 18980 1knwA 425 4.13e+01 b.49.2.3,c.1.6.1 90969,90970 1f7lA 121 4.16e+01 1f7lA d.150.1.2 59666 1hkfA 122 4.18e+01 b.1.1.1 83553 2c8sA 172 4.19e+01 1rzfL 213 4.33e+01 b.1.1.1,b.1.1.2 98152,98153 1bkjA 240 4.34e+01 1bkjA d.90.1.1 40243 1uhvA 500 4.35e+01 b.71.1.2,c.1.8.3 99402,99403 1j09A 468 4.35e+01 a.97.1.1,c.26.1.1 77025,77026 1vkkA 154 4.37e+01 d.109.1.2 108669 1yf3A 259 4.42e+01 1khbA 625 4.44e+01 c.91.1.1,c.109.1.1 68606,68607 1s69A 124 4.44e+01 a.1.1.1 105305 1l5pA 93 4.46e+01 d.15.4.1 73598 1mqiA 263 4.51e+01 c.94.1.1 91398 1oaa 259 4.52e+01 1oaa c.2.1.2 29829 1m55A 197 4.58e+01 d.89.1.3 74469 1w68A 390 4.62e+01 a.25.1.2 109216 1wgzA 510 4.62e+01 1g7nA 131 4.64e+01 b.60.1.2 83274 1u4bA 580 4.72e+01 c.55.3.5,e.8.1.1 107664,107665 1yakA 263 4.74e+01 1ggzA 148 4.82e+01 a.39.1.5 70176 1bsmA 201 4.82e+01 1avmA a.2.11.1,d.44.1.1 15780,38743 1jcfA 344 4.83e+01 c.55.1.1,c.55.1.1 62878,62879 1m1hA 248 4.85e+01 b.114.1.1,d.58.42.1 78415,78416 1a2yA 107 4.88e+01 8fabA b.1.1.1 19926 1if1A 113 4.92e+01 2irfG a.4.5.23 16183 1yarA 233 4.96e+01 2f42A 179 4.97e+01 1uyjA 296 5.01e+01 f.8.1.2 108143 1t4wA 196 5.02e+01 b.2.5.2 106427 1ngzA 213 5.10e+01 b.1.1.1,b.1.1.2 80500,80501 2a72A 146 5.21e+01 1puc 105 5.23e+01 1puc d.97.1.1 40675 1vjqA 79 5.26e+01 k.43.1.1 100830 1g61A 228 5.29e+01 1g61A d.126.1.1 41126 1nnxA 109 5.32e+01 b.40.10.1 92013 1o4yA 288 5.33e+01 b.29.1.2 92473 1ynlH 219 5.38e+01 1i4uA 181 5.41e+01 b.60.1.1 61732 1bazA 53 5.43e+01 1bazA a.43.1.1 17421 1k4nA 192 5.48e+01 d.32.1.5 72059 1c8cA 64 5.48e+01 1azpA b.34.13.1 59084 1luzA 88 5.50e+01 b.40.4.5 74271 1uvjA 664 5.54e+01 e.8.1.6 100045 2db9A 149 5.57e+01 1pufB 73 5.57e+01 a.4.1.1 95132 2fi9A 128 5.58e+01 1auiB 169 5.58e+01 1auiB a.39.1.5 17325 1uebA 184 5.64e+01 b.34.5.2,b.40.4.5,b.40.4.5 107782,107783,107784 2hddA 61 5.66e+01 2hddA a.4.1.1 15971 2awgA 118 5.67e+01 2bhoA 130 5.71e+01 2d9gA 53 5.72e+01 1wdtA 665 5.78e+01 2fr2A 172 5.79e+01 1uu1A 335 5.84e+01 c.67.1.1 99993 2rhe 114 5.93e+01 8fabA b.1.1.1 20523 1lf7A 182 5.94e+01 b.60.1.1 73878 2c5uA 375 5.96e+01 1i40A 175 6.01e+01 b.40.5.1 66024 1ka8A 100 6.02e+01 a.4.5.20 72241 1mqkL 120 6.03e+01 b.1.1.1 85054 1e19A 314 6.04e+01 1b7bA c.73.1.1 34967 1yh3A 256 6.17e+01 1tbaA 67 6.20e+01 1tbaA a.15.1.1 16380 2bvfA 459 6.27e+01 1nxuA 333 6.28e+01 c.122.1.1 86389 2g1lA 104 6.28e+01 1y8qA 346 6.29e+01 1wwuA 99 6.34e+01 2ar0A 541 6.38e+01 2esrA 177 6.50e+01 1ws0A 156 6.51e+01 1orc 71 6.55e+01 1orc a.35.1.2 17054 1aihA 170 6.61e+01 1aihA d.163.1.1 42149 1edqA 540 6.62e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1cbs 137 6.68e+01 1hmt b.60.1.2 27201 1tfr 305 6.68e+01 1tfr a.60.7.1,c.120.1.2 18081,33351 1e2wA 251 6.70e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1sdsA 117 6.71e+01 d.79.3.1 105439 1s9uA 207 6.71e+01 a.184.1.1 105390 1jfuA 186 6.74e+01 c.47.1.10 62940 2fd5A 180 6.74e+01 1aj8A 371 6.75e+01 1aj8A a.103.1.1 18900 1g57A 217 6.75e+01 1g57A d.115.1.2 60253 1xbiA 120 6.76e+01 1r6lA 239 6.78e+01 d.14.1.4,d.101.1.1 97153,97154 1nezG 128 6.80e+01 b.1.1.1 85592 2cs8A 108 6.85e+01 1ujpA 271 6.92e+01 c.1.2.4 99462 2g2dA 193 7.02e+01 1r3eA 309 7.07e+01 b.122.1.1,d.265.1.2 96907,96908 1ne8A 117 7.07e+01 b.34.6.2 80424 2aw4P 114 7.09e+01 2d00A 109 7.21e+01 1fjgS 93 7.27e+01 1qkfA d.28.1.1 38451 1oflA 481 7.27e+01 b.80.1.4 103934 2lisA 136 7.28e+01 1lis a.19.1.1 16405 1wba 175 7.31e+01 1wba b.42.4.1 25591 1m3wA 32 7.43e+01 k.8.1.1 78575 2ah6A 208 7.51e+01 1ok8A 394 7.53e+01 b.1.18.4,f.10.1.1 93236,93237 1uzxA 169 7.54e+01 d.20.1.2 100238 1u59A 287 7.57e+01 d.144.1.7 107681 1umhA 184 7.60e+01 b.18.1.21 99605 1t8hA 277 7.62e+01 d.194.1.2 106664 1wwjA 105 7.67e+01 1neu 124 7.69e+01 1neu b.1.1.1 19704 1wwiA 148 7.75e+01 1ecmA 109 7.76e+01 1ecmA a.130.1.1 19492 2h3jA 75 7.79e+01 1mk4A 157 7.81e+01 d.108.1.1 84979 2cvxA 888 7.82e+01 1u14A 172 7.85e+01 c.51.4.3 107579 2a3qA 170 7.93e+01 1d0qA 103 7.94e+01 1d0qA g.41.3.2 45208 1bf6A 291 7.96e+01 1pscA c.1.9.3 29065 3thiA 371 7.98e+01 2thiA c.94.1.1 35792 1omrA 201 8.01e+01 a.39.1.5 93349 1tqyA 424 8.03e+01 c.95.1.1,c.95.1.1 107245,107246 1ywmA 200 8.11e+01 1t0aA 159 8.14e+01 1k61A 60 8.23e+01 a.4.1.1 77270 1zb9A 143 8.30e+01 1gmlA 178 8.33e+01 c.8.5.2 70273 1gai 472 8.35e+01 1ayx a.102.1.1 18819 2f4pA 147 8.39e+01 2a38A 194 8.40e+01 2auhB 59 8.42e+01 1uwzA 136 8.43e+01 c.97.1.1 108081 1iu4A 331 8.44e+01 d.3.1.8 71430 1vg8A 207 8.44e+01 c.37.1.8 108606 1ed8A 449 8.44e+01 1b8jA c.76.1.1 34988 1ig5A 75 8.45e+01 4icb a.39.1.1 62363 1v2dA 381 8.46e+01 c.67.1.1 108281 1yleA 342 8.47e+01 1ykhB 132 8.52e+01 1mvuB 121 8.52e+01 b.1.1.1 91475 1jw9B 249 8.55e+01 c.111.1.1 67377 1b56 135 8.65e+01 1hmt b.60.1.2 27183 1h5uA 842 8.66e+01 1a8i c.87.1.4 60655 2ajuL 216 8.72e+01 1pqhA 143 8.87e+01 b.52.2.1 95017 1udxA 416 8.92e+01 b.117.1.1,c.37.1.8,d.242.1.1 99228,99229,99230 1o3uA 135 8.94e+01 a.24.16.3 86615