# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1s5uA 138 2.61e-18 d.38.1.1 98573 2cyeA 133 5.74e-18 1z54A 132 5.10e-17 2aliA 158 2.90e-15 1yliA 153 2.59e-14 1vpmA 169 6.13e-14 1lo7A 141 2.26e-13 d.38.1.1 74144 2gf6A 135 4.53e-13 2essA 248 3.42e-12 2gvhA 288 2.82e-11 2h4uA 145 5.03e-09 1wluA 136 1.36e-07 1j1yA 136 1.50e-07 d.38.1.5 90776 2fs2A 151 1.70e-07 1zkiA 133 3.72e-07 1ixlA 131 7.92e-06 d.38.1.5 90717 1o0iA 138 1.28e-05 d.38.1.5 86532 2b3nA 159 2.05e-05 1t82A 155 7.16e-05 d.38.1.5 106639 1q4uA 151 8.86e-05 d.38.1.5 95828 2cwzA 141 1.07e-04 1vh5A 148 3.39e-04 d.38.1.5 100642 1sh8A 154 4.42e-04 d.38.1.5 105549 1iq6A 134 9.15e-04 d.38.1.4 76755 1z6bA 154 3.03e-03 1c8uA 285 5.22e-03 1c8uA d.38.1.3,d.38.1.3 38547,38548 1yocA 147 5.33e-03 2bi0A 337 5.88e-02 2bdvA 231 1.40e-01 1tbuA 118 3.55e-01 3fib 249 1.29e+00 3fib d.171.1.1 42455 1zxkA 98 1.62e+00 2eifA 136 1.68e+00 1bkb b.34.5.2,b.40.4.5 24607,25339 1kt6A 183 2.22e+00 b.60.1.1 84466 2f4lA 297 2.37e+00 2bm3A 166 2.72e+00 2as0A 396 3.35e+00 1xeoA 168 4.03e+00 1txqA 93 4.57e+00 2bsjA 133 4.60e+00 1b8aA 438 4.79e+00 1b8aA b.40.4.1,d.104.1.1 25244,40765 1hn0A 1021 6.23e+00 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1jeoA 180 6.43e+00 c.80.1.3 66611 1gotB 340 6.77e+00 1tbgA b.69.4.1 27648 1lla 628 6.79e+00 1lla a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1jhfA 202 7.42e+00 a.4.5.2,b.87.1.1 63057,63058 2bcjB 340 7.79e+00 1qxyA 252 7.97e+00 d.127.1.1 96565 1wxcB 134 8.58e+00 1f3mA 80 9.34e+00 1f3mA j.66.1.1 46358 1ga6A 372 9.55e+00 1ga1A c.41.1.2 32556 1pa1A 310 9.56e+00 c.45.1.2 94404 1xjvA 294 9.93e+00 2bc4A 211 9.99e+00 2f71A 298 9.99e+00 1vcaA 202 1.02e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 1tyjA 170 1.03e+01 1iicA 422 1.06e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1of5A 221 1.08e+01 d.17.4.2 86933 1m3sA 186 1.15e+01 c.80.1.3 78573 1tc5A 194 1.16e+01 c.110.1.1 106752 1pn2A 280 1.18e+01 d.38.1.4,d.38.1.4 94930,94931 1fm0D 81 1.19e+01 1fmaD d.15.3.1 37642 1yycA 174 1.21e+01 2g1lA 104 1.30e+01 1i2sA 282 1.32e+01 e.3.1.1 71104 1jyaA 130 1.34e+01 d.198.1.1 67453 1dpjA 329 1.43e+01 1smrA b.50.1.2 26828 1te5A 257 1.44e+01 d.153.1.1 106795 1f5mA 180 1.45e+01 1f5mB d.110.2.1 40895 1g7nA 131 1.45e+01 b.60.1.2 83274 2bhoA 130 1.51e+01 1lshA 1056 1.55e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1xc3A 302 1.61e+01 1lyvA 306 1.62e+01 c.45.1.2 74348 1ylxA 103 1.64e+01 1q3iA 214 1.65e+01 d.220.1.1 104524 1j1bA 420 1.66e+01 d.144.1.7 90758 1m1lA 236 1.68e+01 d.260.1.1 91166 1gz8A 299 1.73e+01 d.144.1.7 83405 1u69A 163 1.76e+01 d.32.1.7 107699 1yq2A 1024 1.77e+01 1ww7A 160 1.79e+01 1rl4A 188 1.80e+01 d.167.1.1 97636 1iujA 106 1.81e+01 d.58.4.5 90701 1e25A 282 1.82e+01 1e25A e.3.1.1 42731 2fpnA 216 1.85e+01 1or0B 528 1.85e+01 1mdc 133 1.86e+01 1hmt b.60.1.2 27198 1w9hA 427 1.86e+01 1vprA 374 1.88e+01 1t4wA 196 1.88e+01 b.2.5.2 106427 1j09A 468 1.90e+01 a.97.1.1,c.26.1.1 77025,77026 1zboA 210 1.92e+01 1yemA 179 2.00e+01 2bwqA 129 2.13e+01 2ae5B 528 2.16e+01 1w9aA 147 2.21e+01 2f96A 224 2.24e+01 2db9A 149 2.34e+01 1njhA 119 2.38e+01 b.128.1.1 85787 2gtqA 867 2.39e+01 2cw9A 194 2.43e+01 1qftA 175 2.44e+01 1qftA b.60.1.1 27151 2aq6A 147 2.47e+01 2c8mA 262 2.47e+01 1dnlA 199 2.48e+01 1ci0A b.45.1.1 25753 1vjzA 341 2.53e+01 c.1.8.3 100838 1kzfA 230 2.54e+01 d.108.1.3 73354 1rcqA 357 2.57e+01 b.49.2.2,c.1.6.1 104882,104883 1omhA 293 2.58e+01 d.89.1.5 93348 1aym3 238 2.61e+01 1aym3 2ar0A 541 2.63e+01 1r77A 103 2.65e+01 1m3yA 413 2.69e+01 b.121.2.3,b.121.2.3 78579,78580 1b5pA 385 2.72e+01 c.67.1.1 90403 1wk2A 121 2.74e+01 1h3nA 878 2.80e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1b65A 375 2.84e+01 1b65A d.154.1.1 42020 2aalA 131 2.89e+01 1zndA 174 2.93e+01 1jbeA 128 3.01e+01 3chy c.23.1.1 62845 1g5hA 454 3.01e+01 1g5hA c.51.1.1,d.104.1.1 60270,60271 1qg7A 67 3.10e+01 1a15A d.9.1.1 37449 1vyfA 135 3.23e+01 b.60.1.2 108902 1o6vA 466 3.27e+01 b.1.18.15,c.10.2.1 81099,81100 1mkaA 171 3.27e+01 1mkaA d.38.1.2 38543 1wmaA 276 3.28e+01 1g79A 218 3.30e+01 1ci0A b.45.1.1 25752 1oo0A 147 3.33e+01 d.232.1.1 87182 1n67A 359 3.38e+01 b.2.3.4,b.2.3.4 85354,85355 1l0wA 580 3.39e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1n0wA 243 3.40e+01 c.37.1.11 79772 1qy1A 174 3.49e+01 b.60.1.1 96568 1mbyA 88 3.55e+01 d.223.1.1 78931 1sheA 103 3.57e+01 d.274.1.1 105551 1g38A 393 3.65e+01 2admA c.66.1.27 60235 1k32A 1045 3.66e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 68068,68069,68070,68071 1s5jA 847 3.67e+01 1iqzA 81 3.81e+01 d.58.1.4 66281 1ed8A 449 4.08e+01 1b8jA c.76.1.1 34988 1vr4A 103 4.09e+01 2auhB 59 4.11e+01 1bxoA 323 4.49e+01 2er7E b.50.1.2 26805 1j05B 121 4.62e+01 b.1.1.1 90736 1zhxA 438 4.67e+01 1owfB 94 4.76e+01 a.55.1.1 87488 1b3aA 67 4.76e+01 1b3aA d.9.1.1 37410 1djxA 624 4.82e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 1k78A 149 4.84e+01 a.4.1.5,a.4.1.5 68255,68256 1hjrA 158 4.88e+01 1hjrA c.55.3.6 33727 1su8A 636 4.90e+01 e.26.1.2 98999 1mk4A 157 4.91e+01 d.108.1.1 84979 1vzyA 291 4.92e+01 1rj8A 164 4.94e+01 b.22.1.1 97547 1nkgA 508 4.96e+01 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1wznA 252 5.00e+01 1jsdA 319 5.04e+01 b.19.1.2 63258 2b6nA 278 5.11e+01 2ajgA 196 5.16e+01 1e44B 96 5.17e+01 1e44B b.101.1.1 59220 1ifc 132 5.18e+01 b.60.1.2 27173 2booA 247 5.22e+01 1xn5A 146 5.31e+01 2aieP 203 5.35e+01 1fm4A 159 5.40e+01 1bv1 d.129.3.1 76186 1akz 223 5.50e+01 3eugA c.18.1.1 31007 2a90A 240 5.53e+01 1g87A 614 5.55e+01 a.102.1.2,b.2.2.2 83275,83276 1zkoA 136 5.56e+01 1inp 400 5.60e+01 1inp e.7.1.1 42972 1bdo 80 5.73e+01 1bdo b.84.1.1 28214 1m4iA 181 5.74e+01 d.108.1.1 74457 1c0pA 363 5.77e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1vrmA 325 5.89e+01 1fthA 122 5.92e+01 d.150.1.2 60028 1w66A 232 5.94e+01 1kopA 223 5.94e+01 2cba b.74.1.1 27966 2b49A 287 5.95e+01 1sxvA 172 5.96e+01 1n4xH 120 5.99e+01 b.1.1.1 85324 1ig8A 486 6.00e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1exrA 148 6.06e+01 1cll a.39.1.5 17299 1yopA 83 6.10e+01 1h6uA 308 6.13e+01 b.1.18.15,c.10.2.1 65688,65689 2b06A 155 6.28e+01 1dqeA 137 6.29e+01 1dqeA a.39.2.1 17388 1zxfA 155 6.35e+01 1pcfA 66 6.36e+01 1pcfA d.18.1.1 38142 1widA 130 6.36e+01 1iam 185 6.37e+01 1zxq b.1.1.3,b.1.1.4 21653,21689 1jl2A 156 6.40e+01 c.55.3.1 66822 2evbA 74 6.43e+01 1v93A 296 6.50e+01 c.1.23.1 100532 1vq0A 302 6.55e+01 1erjA 393 6.58e+01 1erjA b.69.4.1 27660 2fdiA 211 6.68e+01 1lkkA 105 6.71e+01 1lckA d.93.1.1 40412 1nzjA 298 6.89e+01 c.26.1.1 92377 1rz1A 161 6.91e+01 b.45.1.2 98124 1g7sA 594 6.91e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 2bt9A 90 6.92e+01 1idk 359 7.04e+01 1qcxA b.80.1.2 28025 1jhdA 396 7.07e+01 b.122.1.3,c.26.1.5 66712,66713 1oaqH 121 7.10e+01 b.1.1.1 92707 3il8 72 7.11e+01 1tvxA d.9.1.1 37356 1zyoA 191 7.33e+01 1qd6C 240 7.34e+01 1qd5A 1k87A 669 7.45e+01 a.176.1.1,c.1.23.2 77286,77287 1j6oA 268 7.47e+01 c.1.9.12 77088 1xfrA 128 7.51e+01 1ztsA 139 7.53e+01 1fm0E 150 7.62e+01 1fmaE d.41.5.1 38629 2axoA 270 7.63e+01 2gqrA 237 7.67e+01 1xi1A 575 7.69e+01 2aboA 136 7.70e+01 1i40A 175 7.79e+01 b.40.5.1 66024 1wkbA 810 7.80e+01 1i3zA 103 7.81e+01 d.93.1.1 83667 1lkdA 297 7.82e+01 d.32.1.3,d.32.1.3 78059,78060 1nxuA 333 7.88e+01 c.122.1.1 86389 2f5uA 447 7.96e+01 1zn8A 180 7.99e+01 2ftbA 125 8.00e+01 2g0qA 173 8.16e+01 1gjnA 153 8.19e+01 a.1.1.2 70191 1nlbH 218 8.19e+01 b.1.1.1,b.1.1.2 80621,80622 1u53A 196 8.28e+01 1zxuA 217 8.32e+01 2b69A 343 8.32e+01 2frfA 153 8.36e+01 1q7lA 198 8.39e+01 c.56.5.4 96044 1ga3A 113 8.43e+01 1ga3A a.26.1.2 60411 1ggzA 148 8.68e+01 a.39.1.5 70176 2cs8A 108 8.74e+01 1kmqA 184 8.75e+01 c.37.1.8 84412 1ouoA 210 8.78e+01 d.4.1.6 93554 1ulrA 88 8.80e+01 1u7kA 131 8.84e+01 1vavA 222 8.87e+01 b.29.1.18 108472 1xvxA 312 8.91e+01 1j2gA 319 8.95e+01 d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4 103824,103825,103826,103827,103828 2bh1A 250 8.96e+01 2cvbA 188 8.97e+01