# List of top-scoring protein chains for T0364.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cyeA 133 4.25e-09 1s5uA 138 6.09e-09 d.38.1.1 98573 1njkA 156 6.16e-09 d.38.1.1 85818 2av9A 147 1.30e-08 1z54A 132 2.07e-08 2aliA 158 1.16e-07 1yliA 153 4.76e-07 2gf6A 135 6.48e-07 1vpmA 169 1.33e-06 1lo7A 141 3.35e-06 d.38.1.1 74144 1lo9A 141 4.61e-06 d.38.1.1 74146 1y7uA 174 1.58e-05 2essA 248 5.11e-05 2gvhA 288 7.44e-05 2h4uA 145 8.96e-04 2cy9A 140 1.64e-03 1psuA 140 1.18e-02 d.38.1.5 88285 2fs2A 151 1.19e-02 1wluA 136 1.30e-02 1zkiA 133 1.76e-02 2b3nA 159 3.32e-02 1ixlA 131 4.04e-02 d.38.1.5 90717 1u1zA 168 6.35e-02 d.38.1.6 107602 2cwzA 141 3.04e-01 1iq6A 134 3.47e-01 d.38.1.4 76755 2b6eA 146 4.10e-01 1o0iA 138 4.71e-01 d.38.1.5 86532 1t82A 155 9.14e-01 d.38.1.5 106639 1q6wA 161 9.80e-01 d.38.1.4 96000 1q4uA 151 1.37e+00 d.38.1.5 95828 1sh8A 154 2.28e+00 d.38.1.5 105549 1c8uA 285 2.45e+00 1c8uA d.38.1.3,d.38.1.3 38547,38548 2bdvA 231 2.74e+00 2fl8A 602 4.04e+00 1vh9A 149 6.08e+00 d.38.1.5 100653 1zhgA 139 6.37e+00 1z6bA 154 6.69e+00 2a62A 322 9.19e+00 2a4eA 215 9.54e+00 1zxkA 98 1.07e+01 1k77A 260 1.10e+01 c.1.15.5 72096 1eg0B 148 1.12e+01 1pkp i.1.1.1 45808 1dv4E 145 1.13e+01 i.1.1.3 45875 1pkp 150 1.13e+01 1pkp d.14.1.1,d.50.1.2 37551,38787 2a4cA 99 1.50e+01 2f4pA 147 1.69e+01 2fibA 269 1.91e+01 3fib d.171.1.1 42457 1rf1C 311 1.92e+01 d.171.1.1,h.1.8.1 97351,97352 1re3C 311 1.95e+01 d.171.1.1,h.1.8.1 104894,104895 1fzcC 319 1.96e+01 3fib d.171.1.1,h.1.8.1 42461,45592 1n86C 324 1.96e+01 d.171.1.1,h.1.8.1 80280,80281 2bi0A 337 1.97e+01 3fib 249 1.97e+01 3fib d.171.1.1 42455 1vh5A 148 2.06e+01 d.38.1.5 100642 1vmkA 277 2.13e+01 1deqC 411 2.19e+01 i.9.1.1 45995 1te5A 257 2.44e+01 d.153.1.1 106795 1sbkA 144 2.79e+01 d.38.1.5 98791 1zovA 386 3.07e+01 1grj 158 3.31e+01 1grj a.2.1.1,d.26.1.2 15691,38433 1j5uA 136 3.42e+01 d.208.1.1 71584 2aioA 269 3.51e+01 1oysA 245 3.68e+01 d.14.1.4,d.101.1.1 93758,93759 1hc1 657 3.73e+01 1lla a.85.1.1,a.86.1.1,b.1.18.3 18494,18505,21870 1oypA 245 3.82e+01 d.14.1.4,d.101.1.1 93734,93735 1tie 172 3.86e+01 1wba b.42.4.1 25592 1hd0A 75 3.88e+01 1ha1 d.58.7.1 39188 1ny71 189 4.10e+01 2f4lA 297 4.14e+01 1vorV 113 4.17e+01 2d3oS 115 4.21e+01 1nfdE 212 4.45e+01 8fabA b.1.1.1,b.1.1.2 20186,21202 1sheA 103 4.57e+01 d.274.1.1 105551 1wvuA 265 4.60e+01 1wvvA 265 4.63e+01 1khbA 625 4.81e+01 c.91.1.1,c.109.1.1 68606,68607 1sgwA 214 5.45e+01 c.37.1.12 105541 2cdhS 248 5.57e+01 1lilA 212 5.67e+01 8fabA b.1.1.1,b.1.1.2 20557,21466 2b7uA 257 5.83e+01 1yocA 147 6.20e+01 1qdlA 422 6.41e+01 1qdlA d.161.1.1 42088 1mtyD 512 6.58e+01 1mhyD a.25.1.2 16742 1xvbA 527 6.62e+01 1wguA 136 6.63e+01 1ckv 141 6.72e+01 1ckv d.137.1.1 41452 1s9cA 298 7.08e+01 1q3tA 236 7.10e+01 c.37.1.1 104525 1e6yA 569 7.13e+01 1mroA a.89.1.1,d.58.31.2 18529,39447 1zo2A 129 7.30e+01 1sg0A 230 7.34e+01 1zx1A 231 7.35e+01 2bzsA 236 7.39e+01 1eif 135 7.41e+01 1bkb b.34.5.2,b.40.4.5 24608,25340 2g1lA 104 7.43e+01 1vjzA 341 7.46e+01 c.1.8.3 100838 1g43A 160 7.46e+01 1nbcA b.2.2.2 22392 2eifA 136 7.47e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1pvnA 376 7.78e+01 c.1.5.1 88312 1y6wA 148 7.78e+01 1r6lA 239 7.98e+01 d.14.1.4,d.101.1.1 97153,97154 1me8A 503 8.09e+01 c.1.5.1 79028 1j6uA 469 8.18e+01 c.5.1.1,c.59.1.1,c.72.2.1 77094,77095,77096 1gph1 465 8.23e+01 1ecfB 1ao0A 459 8.23e+01 1ecfB c.61.1.1,d.153.1.1 34049,41816 1fb1A 196 8.29e+01 1a8rA d.96.1.1 40652 1h65A 270 8.33e+01 c.37.1.8 65640 1is8A 230 8.45e+01 d.96.1.1 66321 1clm 148 8.67e+01 1cll a.39.1.5 17301 1exrA 148 8.75e+01 1cll a.39.1.5 17299 1ws0A 156 8.81e+01 1n73C 330 8.85e+01 d.171.1.1,h.1.8.1 80217,80218 1q7xA 108 8.85e+01 b.36.1.1 96059 1nfiA 301 8.94e+01 1a3qA b.1.18.1,b.2.5.3 21942,22455