# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2cyeA 133 2.23e-14 1s5uA 138 9.89e-14 d.38.1.1 98573 1njkA 156 1.13e-13 d.38.1.1 85818 2av9A 147 1.72e-13 1z54A 132 2.47e-13 2aliA 158 1.04e-11 2gf6A 135 7.64e-11 1yliA 153 2.05e-10 1lo7A 141 8.88e-10 d.38.1.1 74144 1vpmA 169 9.46e-10 1bvqA 141 1.34e-09 1bvqA d.38.1.1 38542 2essA 248 1.86e-09 2gvhA 288 2.72e-06 2h4uA 145 3.36e-06 2fs2A 151 2.80e-04 1psuA 140 3.45e-04 d.38.1.5 88285 1wluA 136 4.15e-04 1j1yA 136 4.73e-04 d.38.1.5 90776 1ixlA 131 1.27e-03 d.38.1.5 90717 1zkiA 133 3.03e-03 2cwzA 141 6.13e-03 1u1zA 168 6.39e-03 d.38.1.6 107602 2b3nA 159 8.41e-03 1q4uA 151 4.19e-02 d.38.1.5 95828 1iq6A 134 4.67e-02 d.38.1.4 76755 1c8uA 285 6.92e-02 1c8uA d.38.1.3,d.38.1.3 38547,38548 2b6eA 146 7.15e-02 1o0iA 138 1.05e-01 d.38.1.5 86532 1vh5A 148 3.66e-01 d.38.1.5 100642 2bi0A 337 4.00e-01 1t82A 155 8.82e-01 d.38.1.5 106639 1z6bA 154 1.04e+00 1sh8A 154 1.57e+00 d.38.1.5 105549 6paxA 133 1.76e+00 6paxA a.4.1.5,a.4.1.5 64758,64759 1nlbH 218 2.96e+00 b.1.1.1,b.1.1.2 80621,80622 1te5A 257 4.26e+00 d.153.1.1 106795 2f8lA 344 6.82e+00 3fib 249 7.74e+00 3fib d.171.1.1 42455 1to6A 371 8.86e+00 c.141.1.1 107170 2fibA 269 9.21e+00 3fib d.171.1.1 42457 1i3zA 103 1.22e+01 d.93.1.1 83667 1u7kA 131 1.27e+01 1zxkA 98 1.30e+01 1txqA 93 1.33e+01 1ox0A 430 1.36e+01 c.95.1.1,c.95.1.1 87495,87496 1k78A 149 1.56e+01 a.4.1.5,a.4.1.5 68255,68256 2bm3A 166 1.61e+01 1plq 258 1.70e+01 1plq d.131.1.2,d.131.1.2 41388,41389 1w66A 232 1.70e+01 1pkp 150 1.73e+01 1pkp d.14.1.1,d.50.1.2 37551,38787 1t4wA 196 1.75e+01 b.2.5.2 106427 2booA 247 1.75e+01 1lc5A 364 1.79e+01 c.67.1.1 73827 1kt6A 183 1.88e+01 b.60.1.1 84466 2gatA 66 1.88e+01 1gatA g.39.1.1 45102 1yb5A 351 1.91e+01 2aioA 269 1.92e+01 2f4lA 297 1.92e+01 1whnA 128 1.93e+01 2b8tA 223 1.97e+01 1mk4A 157 2.01e+01 d.108.1.1 84979 1oahA 519 2.10e+01 a.138.1.3 86736 1xmrA 243 2.13e+01 1j5uA 136 2.16e+01 d.208.1.1 71584 1ojrA 274 2.17e+01 c.74.1.1 93147 1aqb 183 2.20e+01 1aqb b.60.1.1 27084 1hbq 183 2.21e+01 1aqb b.60.1.1 27078 1j05B 121 2.32e+01 b.1.1.1 90736 1smlA 269 2.52e+01 1smlA d.157.1.1 42053 1qftA 175 2.57e+01 1qftA b.60.1.1 27151 1jykA 254 2.59e+01 c.68.1.13 67458 1e8yA 966 2.60e+01 1e8xA a.118.1.6,b.7.1.1,d.15.1.5,d.144.1.4 19152,23187,37635,41715 1d3yA 301 2.60e+01 1d3yA e.12.1.1 43252 2aabL 218 2.81e+01 1ne8A 117 2.85e+01 b.34.6.2 80424 1khbA 625 2.89e+01 c.91.1.1,c.109.1.1 68606,68607 1c5yB 253 2.90e+01 5ptp 1n4xH 120 2.91e+01 b.1.1.1 85324 1qfoA 119 3.01e+01 1qfoA b.1.1.1 19708 1f8rA 498 3.32e+01 1f8rA c.3.1.2,d.16.1.5 30410,37974 1iqzA 81 3.62e+01 d.58.1.4 66281 1itcA 516 3.64e+01 b.3.1.1,c.1.8.1 83705,83706 8fabA 212 3.66e+01 8fabA b.1.1.1,b.1.1.2 19772,20882 1tbaA 67 3.79e+01 1tbaA a.15.1.1 16380 1cd0A 111 3.87e+01 8fabA b.1.1.1 20559 1vflA 356 3.87e+01 2ct9A 208 3.95e+01 1a6wH 120 4.24e+01 1mfa b.1.1.1 20253 1c5cH 215 4.26e+01 1igtB b.1.1.1,b.1.1.2 20475,21439 1mxmA 254 4.31e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1mvwC 147 4.40e+01 i.15.1.1 79525 2b59A 187 4.41e+01 1oaqH 121 4.46e+01 b.1.1.1 92707 1spgB 147 4.46e+01 1cg5B a.1.1.2 15588 2a0jA 149 4.46e+01 1j6oA 268 4.64e+01 c.1.9.12 77088 1m3sA 186 4.65e+01 c.80.1.3 78573 1tuoA 464 4.74e+01 2a0mA 316 4.77e+01 1vjzA 341 4.92e+01 c.1.8.3 100838 1c8zA 265 4.93e+01 1c8zA d.23.1.1 38375 2be3A 226 4.94e+01 1akhA 61 5.05e+01 1akhA a.4.1.1 15980 1if1A 113 5.05e+01 2irfG a.4.5.23 16183 1gj7B 253 5.17e+01 1js8A 394 5.18e+01 a.86.1.1,b.112.1.1 67219,67220 1q0xH 221 5.21e+01 b.1.1.1,b.1.1.2 95517,95518 1rcqA 357 5.22e+01 b.49.2.2,c.1.6.1 104882,104883 1vemA 516 5.28e+01 2f3yA 148 5.34e+01 1rec 201 5.41e+01 1rec a.39.1.5 17326 1z6mA 175 5.51e+01 1r7jA 95 5.59e+01 a.4.5.49 104836 2aplA 157 5.61e+01 1wurA 220 5.75e+01 1r77A 103 5.82e+01 1hrdA 449 5.92e+01 1k89 c.2.1.7,c.58.1.1 30219,33867 1bgvA 449 5.99e+01 1k89 c.2.1.7,c.58.1.1 30217,33865 2ap1A 327 6.13e+01 2ffjA 300 6.14e+01 2ew0A 192 6.17e+01 2b7uA 257 6.19e+01 1hq1A 105 6.20e+01 1dulA a.36.1.1 17120 3chy 128 6.20e+01 3chy c.23.1.1 31038 1cd8 114 6.22e+01 1cd8 b.1.1.1 19714 1fbr 93 6.26e+01 1fbr g.27.1.1,g.27.1.1 44948,44949 1pp7U 131 6.37e+01 a.4.5.44 94973 1nxuA 333 6.48e+01 c.122.1.1 86389 2arsA 262 6.49e+01 1puc 105 6.57e+01 1puc d.97.1.1 40675 1ospL 214 6.59e+01 32c2A b.1.1.1,b.1.1.2 20116,21146 1jbeA 128 6.60e+01 3chy c.23.1.1 62845 2bdvA 231 6.61e+01 2cfxA 144 6.63e+01 1vr5A 547 6.69e+01 1aohA 147 6.73e+01 1aohA b.2.2.2 22401 1di6A 195 6.79e+01 1di6A c.57.1.1 33863 1rw7A 243 6.81e+01 c.23.16.2 97963 1tyjA 170 6.89e+01 2g0qA 173 6.95e+01 2eueA 279 6.98e+01 1w1iE 357 6.99e+01 c.1.9.1 109051 1mvlA 209 7.06e+01 c.34.1.1 85146 1v71A 323 7.12e+01 1mjuL 219 7.21e+01 b.1.1.1,b.1.1.2 91304,91305 1z2iA 358 7.22e+01 1ok8A 394 7.27e+01 b.1.18.4,f.10.1.1 93236,93237 1u9cA 224 7.30e+01 1tbuA 118 7.53e+01 2gpzA 111 7.57e+01 1hkhA 279 7.57e+01 c.69.1.12 90628 2aieP 203 7.66e+01 1ynpA 317 7.81e+01 1rlmA 271 7.90e+01 1rlmB 271 7.99e+01 1q7lA 198 7.99e+01 c.56.5.4 96044 1yq2A 1024 8.00e+01 2bvpA 276 8.13e+01 1g38A 393 8.30e+01 2admA c.66.1.27 60235 1f3mA 80 8.49e+01 1f3mA j.66.1.1 46358 1nkqA 259 8.55e+01 d.177.1.1 103862 1avmA 201 8.64e+01 1avmA a.2.11.1,d.44.1.1 15782,38745 1vjqA 79 8.68e+01 k.43.1.1 100830 1ikoP 178 8.75e+01 b.6.1.5 71243 1mqkH 127 8.83e+01 b.1.1.1 85053 2hntE 81 8.88e+01 1ucyH 1ulrA 88 8.89e+01 1a8q 274 8.98e+01 1brt c.69.1.12 34702